data_5X7D # _model_server_result.job_id rNGv1TpqU1LhY2QxnarVSg _model_server_result.datetime_utc '2024-11-27 14:16:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5X7D # _exptl.entry_id 5X7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X7D _cell.length_a 40.46 _cell.length_b 75.71 _cell.length_c 173.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 I C2 ACM . A ACM 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 314 n n N1 C6 EPE sing 315 n n N1 C9 EPE sing 316 n n C2 C3 EPE sing 317 n n C2 H21 EPE sing 318 n n C2 H22 EPE sing 319 n n C3 N4 EPE sing 320 n n C3 H31 EPE sing 321 n n C3 H32 EPE sing 322 n n N4 C5 EPE sing 323 n n N4 C7 EPE sing 324 n n C5 C6 EPE sing 325 n n C5 H51 EPE sing 326 n n C5 H52 EPE sing 327 n n C6 H61 EPE sing 328 n n C6 H62 EPE sing 329 n n C7 C8 EPE sing 330 n n C7 H71 EPE sing 331 n n C7 H72 EPE sing 332 n n C8 O8 EPE sing 333 n n C8 H81 EPE sing 334 n n C8 H82 EPE sing 335 n n O8 HO8 EPE sing 336 n n C9 C10 EPE sing 337 n n C9 H91 EPE sing 338 n n C9 H92 EPE sing 339 n n C10 S EPE sing 340 n n C10 H101 EPE sing 341 n n C10 H102 EPE sing 342 n n S O1S EPE doub 343 n n S O2S EPE doub 344 n n S O3S EPE sing 345 n n O3S HOS3 EPE sing 346 n n # _atom_sites.entry_id 5X7D _atom_sites.fract_transf_matrix[1][1] 0.024716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 1201 1201 EPE EPE . C 2 EPE A 1 1202 1202 EPE EPE . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 8VS A 1 1205 1205 8VS 8VS . G 5 CAU A 1 1206 1206 CAU CAU . H 6 BU1 A 1 1207 1207 BU1 BU1 . I 7 ACM A 1 1208 1208 ACM ACM . J 8 HOH A 1 1301 1301 HOH HOH . J 8 HOH A 2 1302 1303 HOH HOH . J 8 HOH A 3 1303 1302 HOH HOH . J 8 HOH A 4 1304 1304 HOH HOH . J 8 HOH A 5 1305 1305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EPE . . . B 2 -0.663 3.457 19.005 0.62 68.8 ? C10 EPE 1201 A 1 HETATM 2 S S EPE . . . B 2 -2.181 2.713 19.725 0.62 81.05 ? S EPE 1201 A 1 HETATM 3 O O1S EPE . . . B 2 -2.964 1.854 18.813 0.62 70.52 ? O1S EPE 1201 A 1 HETATM 4 O O2S EPE . . . B 2 -3.124 3.737 20.207 0.62 74.34 ? O2S EPE 1201 A 1 HETATM 5 O O3S EPE . . . B 2 -1.836 1.901 20.903 0.62 69.16 ? O3S EPE 1201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #