data_5X7D # _model_server_result.job_id phzjleiXqoIA7mokHwH6LA _model_server_result.datetime_utc '2024-11-27 14:11:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 5X7D # _exptl.entry_id 5X7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X7D _cell.length_a 40.46 _cell.length_b 75.71 _cell.length_c 173.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 I C2 ACM . A ACM 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 224 n n C1 C10 CLR sing 225 n n C1 H11 CLR sing 226 n n C1 H12 CLR sing 227 n n C2 C3 CLR sing 228 n n C2 H21 CLR sing 229 n n C2 H22 CLR sing 230 n n C3 C4 CLR sing 231 n n C3 O1 CLR sing 232 n n C3 H3 CLR sing 233 n n C4 C5 CLR sing 234 n n C4 H41 CLR sing 235 n n C4 H42 CLR sing 236 n n C5 C6 CLR doub 237 n n C5 C10 CLR sing 238 n n C6 C7 CLR sing 239 n n C6 H6 CLR sing 240 n n C7 C8 CLR sing 241 n n C7 H71 CLR sing 242 n n C7 H72 CLR sing 243 n n C8 C9 CLR sing 244 n n C8 C14 CLR sing 245 n n C8 H8 CLR sing 246 n n C9 C10 CLR sing 247 n n C9 C11 CLR sing 248 n n C9 H9 CLR sing 249 n n C10 C19 CLR sing 250 n n C11 C12 CLR sing 251 n n C11 H111 CLR sing 252 n n C11 H112 CLR sing 253 n n C12 C13 CLR sing 254 n n C12 H121 CLR sing 255 n n C12 H122 CLR sing 256 n n C13 C14 CLR sing 257 n n C13 C17 CLR sing 258 n n C13 C18 CLR sing 259 n n C14 C15 CLR sing 260 n n C14 H14 CLR sing 261 n n C15 C16 CLR sing 262 n n C15 H151 CLR sing 263 n n C15 H152 CLR sing 264 n n C16 C17 CLR sing 265 n n C16 H161 CLR sing 266 n n C16 H162 CLR sing 267 n n C17 C20 CLR sing 268 n n C17 H17 CLR sing 269 n n C18 H181 CLR sing 270 n n C18 H182 CLR sing 271 n n C18 H183 CLR sing 272 n n C19 H191 CLR sing 273 n n C19 H192 CLR sing 274 n n C19 H193 CLR sing 275 n n C20 C21 CLR sing 276 n n C20 C22 CLR sing 277 n n C20 H20 CLR sing 278 n n C21 H211 CLR sing 279 n n C21 H212 CLR sing 280 n n C21 H213 CLR sing 281 n n C22 C23 CLR sing 282 n n C22 H221 CLR sing 283 n n C22 H222 CLR sing 284 n n C23 C24 CLR sing 285 n n C23 H231 CLR sing 286 n n C23 H232 CLR sing 287 n n C24 C25 CLR sing 288 n n C24 H241 CLR sing 289 n n C24 H242 CLR sing 290 n n C25 C26 CLR sing 291 n n C25 C27 CLR sing 292 n n C25 H25 CLR sing 293 n n C26 H261 CLR sing 294 n n C26 H262 CLR sing 295 n n C26 H263 CLR sing 296 n n C27 H271 CLR sing 297 n n C27 H272 CLR sing 298 n n C27 H273 CLR sing 299 n n O1 H1 CLR sing 300 n n # _atom_sites.entry_id 5X7D _atom_sites.fract_transf_matrix[1][1] 0.024716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 1201 1201 EPE EPE . C 2 EPE A 1 1202 1202 EPE EPE . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 8VS A 1 1205 1205 8VS 8VS . G 5 CAU A 1 1206 1206 CAU CAU . H 6 BU1 A 1 1207 1207 BU1 BU1 . I 7 ACM A 1 1208 1208 ACM ACM . J 8 HOH A 1 1301 1301 HOH HOH . J 8 HOH A 2 1302 1303 HOH HOH . J 8 HOH A 3 1303 1302 HOH HOH . J 8 HOH A 4 1304 1304 HOH HOH . J 8 HOH A 5 1305 1305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . D 3 -8.424 15.248 32.002 1 95.69 ? C1 CLR 1203 A 1 HETATM 2 C C2 CLR . . . D 3 -8.697 15.235 30.502 1 95.45 ? C2 CLR 1203 A 1 HETATM 3 C C3 CLR . . . D 3 -9.709 14.139 30.162 1 94.95 ? C3 CLR 1203 A 1 HETATM 4 C C4 CLR . . . D 3 -11.021 14.267 30.959 1 97.64 ? C4 CLR 1203 A 1 HETATM 5 C C5 CLR . . . D 3 -10.747 14.467 32.447 1 101.94 ? C5 CLR 1203 A 1 HETATM 6 C C6 CLR . . . D 3 -11.482 13.769 33.339 1 97.79 ? C6 CLR 1203 A 1 HETATM 7 C C7 CLR . . . D 3 -11.305 13.859 34.838 1 96.89 ? C7 CLR 1203 A 1 HETATM 8 C C8 CLR . . . D 3 -10.523 15.085 35.269 1 97.85 ? C8 CLR 1203 A 1 HETATM 9 C C9 CLR . . . D 3 -9.286 15.265 34.379 1 96.8 ? C9 CLR 1203 A 1 HETATM 10 C C10 CLR . . . D 3 -9.663 15.441 32.881 1 100.62 ? C10 CLR 1203 A 1 HETATM 11 C C11 CLR . . . D 3 -8.356 16.388 34.901 1 94.8 ? C11 CLR 1203 A 1 HETATM 12 C C12 CLR . . . D 3 -8.029 16.235 36.385 1 96.4 ? C12 CLR 1203 A 1 HETATM 13 C C13 CLR . . . D 3 -9.281 16.152 37.237 1 96.61 ? C13 CLR 1203 A 1 HETATM 14 C C14 CLR . . . D 3 -10.112 14.975 36.743 1 97.58 ? C14 CLR 1203 A 1 HETATM 15 C C15 CLR . . . D 3 -11.229 14.876 37.785 1 98.29 ? C15 CLR 1203 A 1 HETATM 16 C C16 CLR . . . D 3 -10.54 15.28 39.093 1 98.58 ? C16 CLR 1203 A 1 HETATM 17 C C17 CLR . . . D 3 -9.13 15.81 38.732 1 97.33 ? C17 CLR 1203 A 1 HETATM 18 C C18 CLR . . . D 3 -10.056 17.477 37.098 1 96.58 ? C18 CLR 1203 A 1 HETATM 19 C C19 CLR . . . D 3 -10.255 16.827 32.602 1 96.59 ? C19 CLR 1203 A 1 HETATM 20 C C20 CLR . . . D 3 -8.567 16.912 39.68 1 96.84 ? C20 CLR 1203 A 1 HETATM 21 C C21 CLR . . . D 3 -7.104 17.2 39.364 1 95.58 ? C21 CLR 1203 A 1 HETATM 22 C C22 CLR . . . D 3 -8.681 16.562 41.161 1 96.33 ? C22 CLR 1203 A 1 HETATM 23 C C23 CLR . . . D 3 -8.275 17.69 42.129 1 95.72 ? C23 CLR 1203 A 1 HETATM 24 C C24 CLR . . . D 3 -7.751 17.147 43.463 1 94.16 ? C24 CLR 1203 A 1 HETATM 25 C C25 CLR . . . D 3 -8.844 16.511 44.329 1 100.87 ? C25 CLR 1203 A 1 HETATM 26 C C26 CLR . . . D 3 -9.17 15.091 43.898 1 103.99 ? C26 CLR 1203 A 1 HETATM 27 C C27 CLR . . . D 3 -8.444 16.513 45.799 1 92.77 ? C27 CLR 1203 A 1 HETATM 28 O O1 CLR . . . D 3 -9.966 14.077 28.736 1 94.77 ? O1 CLR 1203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #