data_5X7D # _model_server_result.job_id '_hzZR_jBS3Qld8VrSHwyDg' _model_server_result.datetime_utc '2024-10-11 02:17:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 5X7D # _exptl.entry_id 5X7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 647.602 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-carbamoyl-N-[(2R)-2-cyclohexyl-2-phenylacetyl]-L-phenylalanyl-3-bromo-N-methyl-L-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X7D _cell.length_a 40.46 _cell.length_b 75.71 _cell.length_c 173.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 106 1_555 A SG CYS 198 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 191 A CYS 184 1_555 A SG CYS 197 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A SG CYS 400 A CYS 265 1_555 I C2 ACM . A ACM 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? # _chem_comp.formula 'C34 H39 Br N4 O4' _chem_comp.formula_weight 647.602 _chem_comp.id 8VS _chem_comp.mon_nstd_flag . _chem_comp.name 4-carbamoyl-N-[(2R)-2-cyclohexyl-2-phenylacetyl]-L-phenylalanyl-3-bromo-N-methyl-L-phenylalaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBL CBM 8VS doub 1 n y CBL CBK 8VS sing 2 n y CBH NBG 8VS sing 3 n n CBM CBN 8VS sing 4 n y CBJ CBK 8VS sing 5 n n CBJ CBE 8VS sing 6 n n CBK CBP 8VS doub 7 n y NBG CBF 8VS sing 8 n n CBN CBO 8VS doub 9 n y CBF OBI 8VS doub 10 n n CBF CBE 8VS sing 11 n n CBP CBO 8VS sing 12 n y CBO BR1 8VS sing 13 n n CBE NAS 8VS sing 14 n n NAS C 8VS sing 15 n n CD1 CE1 8VS doub 16 n y CD1 CG 8VS sing 17 n y C O 8VS doub 18 n n C CA 8VS sing 19 n n CB CG 8VS sing 20 n n CB CA 8VS sing 21 n n CE1 CZ 8VS sing 22 n y CG CD2 8VS doub 23 n y CA N 8VS sing 24 n n NBC CBB 8VS sing 25 n n CZ CBB 8VS sing 26 n n CZ CE2 8VS doub 27 n y CD2 CE2 8VS sing 28 n y CBB OBD 8VS doub 29 n n N CAI 8VS sing 30 n n OAQ CAI 8VS doub 31 n n CAI CAG 8VS sing 32 n n CAG CAE 8VS sing 33 n n CAG CAH 8VS sing 34 n n CAN CAH 8VS sing 35 n n CAN CAM 8VS sing 36 n n CAF CAE 8VS doub 37 n y CAF CAA 8VS sing 38 n y CAE CAD 8VS sing 39 n y CAH CAJ 8VS sing 40 n n CAA CAB 8VS doub 41 n y CAM CAL 8VS sing 42 n n CAD CAC 8VS doub 43 n y CAB CAC 8VS sing 44 n y CAJ CAK 8VS sing 45 n n CAL CAK 8VS sing 46 n n N H1 8VS sing 47 n n CA H2 8VS sing 48 n n CB H3 8VS sing 49 n n CB H4 8VS sing 50 n n CD1 H5 8VS sing 51 n n CD2 H6 8VS sing 52 n n CE1 H7 8VS sing 53 n n CE2 H8 8VS sing 54 n n CAA H9 8VS sing 55 n n CAB H10 8VS sing 56 n n CAC H11 8VS sing 57 n n CAD H12 8VS sing 58 n n CAF H13 8VS sing 59 n n CAG H14 8VS sing 60 n n CAH H15 8VS sing 61 n n CAJ H16 8VS sing 62 n n CAJ H17 8VS sing 63 n n CAK H18 8VS sing 64 n n CAK H19 8VS sing 65 n n CAL H20 8VS sing 66 n n CAL H21 8VS sing 67 n n CAM H22 8VS sing 68 n n CAM H23 8VS sing 69 n n CAN H24 8VS sing 70 n n CAN H25 8VS sing 71 n n CBE H26 8VS sing 72 n n CBH H27 8VS sing 73 n n CBH H28 8VS sing 74 n n CBH H29 8VS sing 75 n n CBJ H30 8VS sing 76 n n CBJ H31 8VS sing 77 n n CBL H32 8VS sing 78 n n CBM H33 8VS sing 79 n n CBN H34 8VS sing 80 n n CBP H35 8VS sing 81 n n NAS H36 8VS sing 82 n n NBC H37 8VS sing 83 n n NBC H38 8VS sing 84 n n NBG H39 8VS sing 85 n n # _atom_sites.entry_id 5X7D _atom_sites.fract_transf_matrix[1][1] 0.024716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 1201 1201 EPE EPE . C 2 EPE A 1 1202 1202 EPE EPE . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 8VS A 1 1205 1205 8VS 8VS . G 5 CAU A 1 1206 1206 CAU CAU . H 6 BU1 A 1 1207 1207 BU1 BU1 . I 7 ACM A 1 1208 1208 ACM ACM . J 8 HOH A 1 1301 1301 HOH HOH . J 8 HOH A 2 1302 1303 HOH HOH . J 8 HOH A 3 1303 1302 HOH HOH . J 8 HOH A 4 1304 1304 HOH HOH . J 8 HOH A 5 1305 1305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 8VS . . . F 4 2.595 10.036 21.369 0.82 59.17 ? N 8VS 1205 A 1 HETATM 2 C CA 8VS . . . F 4 2.839 10.23 19.965 0.82 57.99 ? CA 8VS 1205 A 1 HETATM 3 C C 8VS . . . F 4 1.536 10.431 19.215 0.82 64.58 ? C 8VS 1205 A 1 HETATM 4 O O 8VS . . . F 4 0.468 10.243 19.78 0.82 63.7 ? O 8VS 1205 A 1 HETATM 5 C CB 8VS . . . F 4 3.584 9.029 19.401 0.82 56.04 ? CB 8VS 1205 A 1 HETATM 6 C CG 8VS . . . F 4 5.056 9.016 19.901 0.82 57.41 ? CG 8VS 1205 A 1 HETATM 7 C CD1 8VS . . . F 4 6.096 9.482 19.067 0.82 59.36 ? CD1 8VS 1205 A 1 HETATM 8 C CD2 8VS . . . F 4 5.356 8.541 21.182 0.82 57.08 ? CD2 8VS 1205 A 1 HETATM 9 C CE1 8VS . . . F 4 7.438 9.467 19.526 0.82 59.23 ? CE1 8VS 1205 A 1 HETATM 10 C CE2 8VS . . . F 4 6.698 8.529 21.638 0.82 55.2 ? CE2 8VS 1205 A 1 HETATM 11 C CZ 8VS . . . F 4 7.732 8.993 20.809 0.82 53.41 ? CZ 8VS 1205 A 1 HETATM 12 C CAA 8VS . . . F 4 6.486 9.405 24.839 0.82 56.12 ? CAA 8VS 1205 A 1 HETATM 13 C CAB 8VS . . . F 4 6.215 8.166 25.391 0.82 55.81 ? CAB 8VS 1205 A 1 HETATM 14 C CAC 8VS . . . F 4 4.882 7.699 25.453 0.82 58.27 ? CAC 8VS 1205 A 1 HETATM 15 C CAD 8VS . . . F 4 3.838 8.479 24.958 0.82 58.52 ? CAD 8VS 1205 A 1 HETATM 16 C CAE 8VS . . . F 4 4.097 9.719 24.419 0.82 57.87 ? CAE 8VS 1205 A 1 HETATM 17 C CAF 8VS . . . F 4 5.446 10.179 24.336 0.82 55.56 ? CAF 8VS 1205 A 1 HETATM 18 C CAG 8VS . . . F 4 2.915 10.542 23.862 0.82 62.02 ? CAG 8VS 1205 A 1 HETATM 19 C CAH 8VS . . . F 4 2.422 11.715 24.735 0.82 59.23 ? CAH 8VS 1205 A 1 HETATM 20 C CAI 8VS . . . F 4 3.248 10.879 22.408 0.82 62.1 ? CAI 8VS 1205 A 1 HETATM 21 C CAJ 8VS . . . F 4 3.463 12.353 25.635 0.82 58.8 ? CAJ 8VS 1205 A 1 HETATM 22 C CAK 8VS . . . F 4 2.758 13.249 26.672 0.82 60.96 ? CAK 8VS 1205 A 1 HETATM 23 C CAL 8VS . . . F 4 1.806 14.241 26.075 0.82 60.81 ? CAL 8VS 1205 A 1 HETATM 24 C CAM 8VS . . . F 4 1.013 13.739 24.864 0.82 60.24 ? CAM 8VS 1205 A 1 HETATM 25 C CAN 8VS . . . F 4 1.825 12.828 23.92 0.82 60.4 ? CAN 8VS 1205 A 1 HETATM 26 C CBB 8VS . . . F 4 9.198 8.978 21.317 0.82 53.43 ? CBB 8VS 1205 A 1 HETATM 27 C CBE 8VS . . . F 4 0.303 11.031 17.107 0.82 62.49 ? CBE 8VS 1205 A 1 HETATM 28 C CBF 8VS . . . F 4 -0.16 9.677 16.655 0.82 62.53 ? CBF 8VS 1205 A 1 HETATM 29 C CBH 8VS . . . F 4 -1.964 8.17 15.764 0.82 53.04 ? CBH 8VS 1205 A 1 HETATM 30 C CBJ 8VS . . . F 4 0.46 11.911 15.858 0.82 72.65 ? CBJ 8VS 1205 A 1 HETATM 31 C CBK 8VS . . . F 4 1.172 13.242 16.101 0.82 73.94 ? CBK 8VS 1205 A 1 HETATM 32 C CBL 8VS . . . F 4 2.433 13.448 15.567 0.82 75.87 ? CBL 8VS 1205 A 1 HETATM 33 C CBM 8VS . . . F 4 3.088 14.662 15.767 0.82 71.2 ? CBM 8VS 1205 A 1 HETATM 34 C CBN 8VS . . . F 4 2.478 15.67 16.496 0.82 73.25 ? CBN 8VS 1205 A 1 HETATM 35 C CBO 8VS . . . F 4 1.205 15.472 17.027 0.82 79.53 ? CBO 8VS 1205 A 1 HETATM 36 C CBP 8VS . . . F 4 0.555 14.268 16.829 0.82 74.8 ? CBP 8VS 1205 A 1 HETATM 37 N NAS 8VS . . . F 4 1.558 10.853 17.814 0.82 64.04 ? NAS 8VS 1205 A 1 HETATM 38 N NBC 8VS . . . F 4 10.289 9.063 20.375 0.82 56.41 ? NBC 8VS 1205 A 1 HETATM 39 N NBG 8VS . . . F 4 -1.52 9.488 16.206 0.82 60.19 ? NBG 8VS 1205 A 1 HETATM 40 O OAQ 8VS . . . F 4 4.018 11.749 22.104 0.82 61.07 ? OAQ 8VS 1205 A 1 HETATM 41 O OBD 8VS . . . F 4 9.429 8.894 22.518 0.82 55.5 ? OBD 8VS 1205 A 1 HETATM 42 O OBI 8VS . . . F 4 0.606 8.743 16.658 0.82 52.46 ? OBI 8VS 1205 A 1 HETATM 43 BR BR1 8VS . . . F 4 0.355 16.863 18.029 0.82 104.06 ? BR1 8VS 1205 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #