data_5X7F # _model_server_result.job_id M9Kw7xo3nPSjHkyLCbiMGw _model_server_result.datetime_utc '2024-10-19 10:34:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5X7F # _exptl.entry_id 5X7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X7F _cell.length_a 57.7 _cell.length_b 57.7 _cell.length_c 158.163 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 79.0815 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 261 n n N HN1 SAM sing 262 n n N HN2 SAM sing 263 n n CA C SAM sing 264 n n CA CB SAM sing 265 n n CA HA SAM sing 266 n n C O SAM doub 267 n n C OXT SAM sing 268 n n CB CG SAM sing 269 n n CB HB1 SAM sing 270 n n CB HB2 SAM sing 271 n n CG SD SAM sing 272 n n CG HG1 SAM sing 273 n n CG HG2 SAM sing 274 n n SD CE SAM sing 275 n n SD C5' SAM sing 276 n n CE HE1 SAM sing 277 n n CE HE2 SAM sing 278 n n CE HE3 SAM sing 279 n n C5' C4' SAM sing 280 n n C5' "H5'1" SAM sing 281 n n C5' "H5'2" SAM sing 282 n n C4' O4' SAM sing 283 n n C4' C3' SAM sing 284 n n C4' H4' SAM sing 285 n n O4' C1' SAM sing 286 n n C3' O3' SAM sing 287 n n C3' C2' SAM sing 288 n n C3' H3' SAM sing 289 n n O3' HO3' SAM sing 290 n n C2' O2' SAM sing 291 n n C2' C1' SAM sing 292 n n C2' H2' SAM sing 293 n n O2' HO2' SAM sing 294 n n C1' N9 SAM sing 295 n n C1' H1' SAM sing 296 n n N9 C8 SAM sing 297 n y N9 C4 SAM sing 298 n y C8 N7 SAM doub 299 n y C8 H8 SAM sing 300 n n N7 C5 SAM sing 301 n y C5 C6 SAM sing 302 n y C5 C4 SAM doub 303 n y C6 N6 SAM sing 304 n n C6 N1 SAM doub 305 n y N6 HN61 SAM sing 306 n n N6 HN62 SAM sing 307 n n N1 C2 SAM sing 308 n y C2 N3 SAM doub 309 n y C2 H2 SAM sing 310 n n N3 C4 SAM sing 311 n y # _atom_sites.entry_id 5X7F _atom_sites.fract_transf_matrix[1][1] 0.017331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 301 1 SAM SAM . C 3 HOH A 1 401 35 HOH HOH . C 3 HOH A 2 402 39 HOH HOH . C 3 HOH A 3 403 54 HOH HOH . C 3 HOH A 4 404 10 HOH HOH . C 3 HOH A 5 405 31 HOH HOH . C 3 HOH A 6 406 79 HOH HOH . C 3 HOH A 7 407 18 HOH HOH . C 3 HOH A 8 408 5 HOH HOH . C 3 HOH A 9 409 7 HOH HOH . C 3 HOH A 10 410 77 HOH HOH . C 3 HOH A 11 411 8 HOH HOH . C 3 HOH A 12 412 23 HOH HOH . C 3 HOH A 13 413 4 HOH HOH . C 3 HOH A 14 414 21 HOH HOH . C 3 HOH A 15 415 61 HOH HOH . C 3 HOH A 16 416 13 HOH HOH . C 3 HOH A 17 417 30 HOH HOH . C 3 HOH A 18 418 70 HOH HOH . C 3 HOH A 19 419 52 HOH HOH . C 3 HOH A 20 420 2 HOH HOH . C 3 HOH A 21 421 38 HOH HOH . C 3 HOH A 22 422 27 HOH HOH . C 3 HOH A 23 423 62 HOH HOH . C 3 HOH A 24 424 1 HOH HOH . C 3 HOH A 25 425 48 HOH HOH . C 3 HOH A 26 426 3 HOH HOH . C 3 HOH A 27 427 11 HOH HOH . C 3 HOH A 28 428 6 HOH HOH . C 3 HOH A 29 429 26 HOH HOH . C 3 HOH A 30 430 20 HOH HOH . C 3 HOH A 31 431 16 HOH HOH . C 3 HOH A 32 432 22 HOH HOH . C 3 HOH A 33 433 28 HOH HOH . C 3 HOH A 34 434 41 HOH HOH . C 3 HOH A 35 435 73 HOH HOH . C 3 HOH A 36 436 32 HOH HOH . C 3 HOH A 37 437 15 HOH HOH . C 3 HOH A 38 438 9 HOH HOH . C 3 HOH A 39 439 74 HOH HOH . C 3 HOH A 40 440 24 HOH HOH . C 3 HOH A 41 441 25 HOH HOH . C 3 HOH A 42 442 81 HOH HOH . C 3 HOH A 43 443 12 HOH HOH . C 3 HOH A 44 444 65 HOH HOH . C 3 HOH A 45 445 51 HOH HOH . C 3 HOH A 46 446 34 HOH HOH . C 3 HOH A 47 447 58 HOH HOH . C 3 HOH A 48 448 14 HOH HOH . C 3 HOH A 49 449 36 HOH HOH . C 3 HOH A 50 450 66 HOH HOH . C 3 HOH A 51 451 55 HOH HOH . C 3 HOH A 52 452 60 HOH HOH . C 3 HOH A 53 453 42 HOH HOH . C 3 HOH A 54 454 50 HOH HOH . C 3 HOH A 55 455 75 HOH HOH . C 3 HOH A 56 456 84 HOH HOH . C 3 HOH A 57 457 40 HOH HOH . C 3 HOH A 58 458 19 HOH HOH . C 3 HOH A 59 459 83 HOH HOH . C 3 HOH A 60 460 53 HOH HOH . C 3 HOH A 61 461 78 HOH HOH . C 3 HOH A 62 462 64 HOH HOH . C 3 HOH A 63 463 63 HOH HOH . C 3 HOH A 64 464 46 HOH HOH . C 3 HOH A 65 465 71 HOH HOH . C 3 HOH A 66 466 82 HOH HOH . C 3 HOH A 67 467 44 HOH HOH . C 3 HOH A 68 468 49 HOH HOH . C 3 HOH A 69 469 68 HOH HOH . C 3 HOH A 70 470 37 HOH HOH . C 3 HOH A 71 471 59 HOH HOH . C 3 HOH A 72 472 69 HOH HOH . C 3 HOH A 73 473 45 HOH HOH . C 3 HOH A 74 474 76 HOH HOH . C 3 HOH A 75 475 47 HOH HOH . C 3 HOH A 76 476 67 HOH HOH . C 3 HOH A 77 477 17 HOH HOH . C 3 HOH A 78 478 43 HOH HOH . C 3 HOH A 79 479 33 HOH HOH . C 3 HOH A 80 480 56 HOH HOH . C 3 HOH A 81 481 29 HOH HOH . C 3 HOH A 82 482 57 HOH HOH . C 3 HOH A 83 483 72 HOH HOH . C 3 HOH A 84 484 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 -1.148 18.944 51.604 1 38.81 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . B 2 -1.646 19.373 52.911 1 41.25 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . B 2 -2.898 18.593 53.293 1 45.22 ? C SAM 301 A 1 HETATM 4 O O SAM . . . B 2 -3.759 18.306 52.453 1 41.78 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . B 2 -3.055 18.224 54.455 1 41.69 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . B 2 -1.94 20.863 52.922 1 41.09 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . B 2 -0.76 21.711 52.485 1 39.54 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . B 2 -1.114 23.483 52.512 1 46.67 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . B 2 -2.317 23.598 51.149 1 46.63 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . B 2 0.363 24.165 51.688 1 46.94 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . B 2 1.658 23.897 52.474 1 46.77 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . B 2 2.793 24.179 51.674 1 44.64 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . B 2 1.789 24.759 53.735 1 43.47 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . B 2 2.006 23.923 54.853 1 44.26 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . B 2 3.019 25.631 53.501 1 47.15 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . B 2 3.76 25.781 54.702 1 48.99 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . B 2 3.782 24.838 52.449 1 43.81 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . B 2 4.688 25.583 51.542 1 44.61 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . B 2 4.524 26.799 50.934 1 42.44 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . B 2 5.621 27.046 50.177 1 45.98 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . B 2 6.481 26.003 50.294 1 42.69 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . B 2 7.733 25.735 49.75 1 42.51 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . B 2 8.33 26.592 48.922 1 46.83 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . B 2 8.355 24.551 50.056 1 41.83 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . B 2 7.757 23.639 50.909 1 45.55 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . B 2 6.523 23.917 51.472 1 42.42 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . B 2 5.896 25.078 51.147 1 43.26 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #