data_5X89 # _model_server_result.job_id hEn9pd4aY0_eJZ68B6IjiQ _model_server_result.datetime_utc '2025-03-17 14:26:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5X89 # _exptl.entry_id 5X89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X89 _cell.length_a 77.674 _cell.length_b 93.059 _cell.length_c 126.109 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 77.674 0 126.109 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5X89 _atom_sites.fract_transf_matrix[1][1] 0.012874 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 1 PO4 PO4 . C 2 PO4 A 1 402 2 PO4 PO4 . D 3 HOH A 1 501 253 HOH HOH . D 3 HOH A 2 502 274 HOH HOH . D 3 HOH A 3 503 181 HOH HOH . D 3 HOH A 4 504 68 HOH HOH . D 3 HOH A 5 505 141 HOH HOH . D 3 HOH A 6 506 205 HOH HOH . D 3 HOH A 7 507 241 HOH HOH . D 3 HOH A 8 508 221 HOH HOH . D 3 HOH A 9 509 91 HOH HOH . D 3 HOH A 10 510 194 HOH HOH . D 3 HOH A 11 511 77 HOH HOH . D 3 HOH A 12 512 283 HOH HOH . D 3 HOH A 13 513 20 HOH HOH . D 3 HOH A 14 514 67 HOH HOH . D 3 HOH A 15 515 182 HOH HOH . D 3 HOH A 16 516 140 HOH HOH . D 3 HOH A 17 517 254 HOH HOH . D 3 HOH A 18 518 142 HOH HOH . D 3 HOH A 19 519 144 HOH HOH . D 3 HOH A 20 520 187 HOH HOH . D 3 HOH A 21 521 28 HOH HOH . D 3 HOH A 22 522 34 HOH HOH . D 3 HOH A 23 523 78 HOH HOH . D 3 HOH A 24 524 104 HOH HOH . D 3 HOH A 25 525 75 HOH HOH . D 3 HOH A 26 526 284 HOH HOH . D 3 HOH A 27 527 36 HOH HOH . D 3 HOH A 28 528 96 HOH HOH . D 3 HOH A 29 529 110 HOH HOH . D 3 HOH A 30 530 232 HOH HOH . D 3 HOH A 31 531 85 HOH HOH . D 3 HOH A 32 532 237 HOH HOH . D 3 HOH A 33 533 17 HOH HOH . D 3 HOH A 34 534 129 HOH HOH . D 3 HOH A 35 535 19 HOH HOH . D 3 HOH A 36 536 244 HOH HOH . D 3 HOH A 37 537 21 HOH HOH . D 3 HOH A 38 538 86 HOH HOH . D 3 HOH A 39 539 54 HOH HOH . D 3 HOH A 40 540 148 HOH HOH . D 3 HOH A 41 541 238 HOH HOH . D 3 HOH A 42 542 266 HOH HOH . D 3 HOH A 43 543 111 HOH HOH . D 3 HOH A 44 544 191 HOH HOH . D 3 HOH A 45 545 139 HOH HOH . D 3 HOH A 46 546 56 HOH HOH . D 3 HOH A 47 547 240 HOH HOH . D 3 HOH A 48 548 80 HOH HOH . D 3 HOH A 49 549 3 HOH HOH . D 3 HOH A 50 550 217 HOH HOH . D 3 HOH A 51 551 291 HOH HOH . D 3 HOH A 52 552 22 HOH HOH . D 3 HOH A 53 553 81 HOH HOH . D 3 HOH A 54 554 176 HOH HOH . D 3 HOH A 55 555 48 HOH HOH . D 3 HOH A 56 556 2 HOH HOH . D 3 HOH A 57 557 134 HOH HOH . D 3 HOH A 58 558 114 HOH HOH . D 3 HOH A 59 559 160 HOH HOH . D 3 HOH A 60 560 175 HOH HOH . D 3 HOH A 61 561 125 HOH HOH . D 3 HOH A 62 562 112 HOH HOH . D 3 HOH A 63 563 227 HOH HOH . D 3 HOH A 64 564 76 HOH HOH . D 3 HOH A 65 565 116 HOH HOH . D 3 HOH A 66 566 102 HOH HOH . D 3 HOH A 67 567 94 HOH HOH . D 3 HOH A 68 568 162 HOH HOH . D 3 HOH A 69 569 165 HOH HOH . D 3 HOH A 70 570 277 HOH HOH . D 3 HOH A 71 571 280 HOH HOH . D 3 HOH A 72 572 92 HOH HOH . D 3 HOH A 73 573 219 HOH HOH . D 3 HOH A 74 574 150 HOH HOH . D 3 HOH A 75 575 47 HOH HOH . D 3 HOH A 76 576 164 HOH HOH . D 3 HOH A 77 577 106 HOH HOH . D 3 HOH A 78 578 265 HOH HOH . D 3 HOH A 79 579 263 HOH HOH . D 3 HOH A 80 580 10 HOH HOH . D 3 HOH A 81 581 53 HOH HOH . D 3 HOH A 82 582 84 HOH HOH . D 3 HOH A 83 583 288 HOH HOH . D 3 HOH A 84 584 8 HOH HOH . D 3 HOH A 85 585 268 HOH HOH . D 3 HOH A 86 586 71 HOH HOH . D 3 HOH A 87 587 118 HOH HOH . D 3 HOH A 88 588 32 HOH HOH . D 3 HOH A 89 589 27 HOH HOH . D 3 HOH A 90 590 180 HOH HOH . D 3 HOH A 91 591 121 HOH HOH . D 3 HOH A 92 592 95 HOH HOH . D 3 HOH A 93 593 201 HOH HOH . D 3 HOH A 94 594 61 HOH HOH . D 3 HOH A 95 595 101 HOH HOH . D 3 HOH A 96 596 88 HOH HOH . D 3 HOH A 97 597 279 HOH HOH . D 3 HOH A 98 598 234 HOH HOH . D 3 HOH A 99 599 225 HOH HOH . D 3 HOH A 100 600 6 HOH HOH . D 3 HOH A 101 601 115 HOH HOH . D 3 HOH A 102 602 146 HOH HOH . D 3 HOH A 103 603 243 HOH HOH . D 3 HOH A 104 604 93 HOH HOH . D 3 HOH A 105 605 72 HOH HOH . D 3 HOH A 106 606 161 HOH HOH . D 3 HOH A 107 607 37 HOH HOH . D 3 HOH A 108 608 137 HOH HOH . D 3 HOH A 109 609 157 HOH HOH . D 3 HOH A 110 610 135 HOH HOH . D 3 HOH A 111 611 79 HOH HOH . D 3 HOH A 112 612 163 HOH HOH . D 3 HOH A 113 613 130 HOH HOH . D 3 HOH A 114 614 126 HOH HOH . D 3 HOH A 115 615 55 HOH HOH . D 3 HOH A 116 616 183 HOH HOH . D 3 HOH A 117 617 233 HOH HOH . D 3 HOH A 118 618 154 HOH HOH . D 3 HOH A 119 619 24 HOH HOH . D 3 HOH A 120 620 39 HOH HOH . D 3 HOH A 121 621 248 HOH HOH . D 3 HOH A 122 622 199 HOH HOH . D 3 HOH A 123 623 70 HOH HOH . D 3 HOH A 124 624 170 HOH HOH . D 3 HOH A 125 625 242 HOH HOH . D 3 HOH A 126 626 82 HOH HOH . D 3 HOH A 127 627 7 HOH HOH . D 3 HOH A 128 628 16 HOH HOH . D 3 HOH A 129 629 66 HOH HOH . D 3 HOH A 130 630 108 HOH HOH . D 3 HOH A 131 631 83 HOH HOH . D 3 HOH A 132 632 51 HOH HOH . D 3 HOH A 133 633 12 HOH HOH . D 3 HOH A 134 634 57 HOH HOH . D 3 HOH A 135 635 63 HOH HOH . D 3 HOH A 136 636 25 HOH HOH . D 3 HOH A 137 637 249 HOH HOH . D 3 HOH A 138 638 9 HOH HOH . D 3 HOH A 139 639 231 HOH HOH . D 3 HOH A 140 640 131 HOH HOH . D 3 HOH A 141 641 124 HOH HOH . D 3 HOH A 142 642 69 HOH HOH . D 3 HOH A 143 643 145 HOH HOH . D 3 HOH A 144 644 1 HOH HOH . D 3 HOH A 145 645 128 HOH HOH . D 3 HOH A 146 646 216 HOH HOH . D 3 HOH A 147 647 46 HOH HOH . D 3 HOH A 148 648 11 HOH HOH . D 3 HOH A 149 649 90 HOH HOH . D 3 HOH A 150 650 132 HOH HOH . D 3 HOH A 151 651 220 HOH HOH . D 3 HOH A 152 652 200 HOH HOH . D 3 HOH A 153 653 5 HOH HOH . D 3 HOH A 154 654 138 HOH HOH . D 3 HOH A 155 655 26 HOH HOH . D 3 HOH A 156 656 14 HOH HOH . D 3 HOH A 157 657 171 HOH HOH . D 3 HOH A 158 658 193 HOH HOH . D 3 HOH A 159 659 122 HOH HOH . D 3 HOH A 160 660 107 HOH HOH . D 3 HOH A 161 661 4 HOH HOH . D 3 HOH A 162 662 23 HOH HOH . D 3 HOH A 163 663 188 HOH HOH . D 3 HOH A 164 664 18 HOH HOH . D 3 HOH A 165 665 38 HOH HOH . D 3 HOH A 166 666 105 HOH HOH . D 3 HOH A 167 667 60 HOH HOH . D 3 HOH A 168 668 98 HOH HOH . D 3 HOH A 169 669 87 HOH HOH . D 3 HOH A 170 670 29 HOH HOH . D 3 HOH A 171 671 103 HOH HOH . D 3 HOH A 172 672 41 HOH HOH . D 3 HOH A 173 673 229 HOH HOH . D 3 HOH A 174 674 195 HOH HOH . D 3 HOH A 175 675 50 HOH HOH . D 3 HOH A 176 676 276 HOH HOH . D 3 HOH A 177 677 73 HOH HOH . D 3 HOH A 178 678 35 HOH HOH . D 3 HOH A 179 679 58 HOH HOH . D 3 HOH A 180 680 155 HOH HOH . D 3 HOH A 181 681 204 HOH HOH . D 3 HOH A 182 682 255 HOH HOH . D 3 HOH A 183 683 218 HOH HOH . D 3 HOH A 184 684 123 HOH HOH . D 3 HOH A 185 685 223 HOH HOH . D 3 HOH A 186 686 113 HOH HOH . D 3 HOH A 187 687 287 HOH HOH . D 3 HOH A 188 688 30 HOH HOH . D 3 HOH A 189 689 174 HOH HOH . D 3 HOH A 190 690 44 HOH HOH . D 3 HOH A 191 691 100 HOH HOH . D 3 HOH A 192 692 62 HOH HOH . D 3 HOH A 193 693 203 HOH HOH . D 3 HOH A 194 694 49 HOH HOH . D 3 HOH A 195 695 40 HOH HOH . D 3 HOH A 196 696 246 HOH HOH . D 3 HOH A 197 697 136 HOH HOH . D 3 HOH A 198 698 224 HOH HOH . D 3 HOH A 199 699 177 HOH HOH . D 3 HOH A 200 700 13 HOH HOH . D 3 HOH A 201 701 159 HOH HOH . D 3 HOH A 202 702 153 HOH HOH . D 3 HOH A 203 703 273 HOH HOH . D 3 HOH A 204 704 272 HOH HOH . D 3 HOH A 205 705 271 HOH HOH . D 3 HOH A 206 706 178 HOH HOH . D 3 HOH A 207 707 152 HOH HOH . D 3 HOH A 208 708 173 HOH HOH . D 3 HOH A 209 709 64 HOH HOH . D 3 HOH A 210 710 42 HOH HOH . D 3 HOH A 211 711 65 HOH HOH . D 3 HOH A 212 712 230 HOH HOH . D 3 HOH A 213 713 89 HOH HOH . D 3 HOH A 214 714 33 HOH HOH . D 3 HOH A 215 715 133 HOH HOH . D 3 HOH A 216 716 168 HOH HOH . D 3 HOH A 217 717 222 HOH HOH . D 3 HOH A 218 718 151 HOH HOH . D 3 HOH A 219 719 117 HOH HOH . D 3 HOH A 220 720 184 HOH HOH . D 3 HOH A 221 721 43 HOH HOH . D 3 HOH A 222 722 226 HOH HOH . D 3 HOH A 223 723 97 HOH HOH . D 3 HOH A 224 724 186 HOH HOH . D 3 HOH A 225 725 278 HOH HOH . D 3 HOH A 226 726 264 HOH HOH . D 3 HOH A 227 727 251 HOH HOH . D 3 HOH A 228 728 207 HOH HOH . D 3 HOH A 229 729 202 HOH HOH . D 3 HOH A 230 730 143 HOH HOH . D 3 HOH A 231 731 156 HOH HOH . D 3 HOH A 232 732 45 HOH HOH . D 3 HOH A 233 733 149 HOH HOH . D 3 HOH A 234 734 261 HOH HOH . D 3 HOH A 235 735 208 HOH HOH . D 3 HOH A 236 736 52 HOH HOH . D 3 HOH A 237 737 59 HOH HOH . D 3 HOH A 238 738 147 HOH HOH . D 3 HOH A 239 739 267 HOH HOH . D 3 HOH A 240 740 228 HOH HOH . D 3 HOH A 241 741 15 HOH HOH . D 3 HOH A 242 742 214 HOH HOH . D 3 HOH A 243 743 197 HOH HOH . D 3 HOH A 244 744 206 HOH HOH . D 3 HOH A 245 745 190 HOH HOH . D 3 HOH A 246 746 179 HOH HOH . D 3 HOH A 247 747 211 HOH HOH . D 3 HOH A 248 748 259 HOH HOH . D 3 HOH A 249 749 275 HOH HOH . D 3 HOH A 250 750 210 HOH HOH . D 3 HOH A 251 751 109 HOH HOH . D 3 HOH A 252 752 290 HOH HOH . D 3 HOH A 253 753 250 HOH HOH . D 3 HOH A 254 754 99 HOH HOH . D 3 HOH A 255 755 120 HOH HOH . D 3 HOH A 256 756 127 HOH HOH . D 3 HOH A 257 757 245 HOH HOH . D 3 HOH A 258 758 212 HOH HOH . D 3 HOH A 259 759 158 HOH HOH . D 3 HOH A 260 760 247 HOH HOH . D 3 HOH A 261 761 167 HOH HOH . D 3 HOH A 262 762 285 HOH HOH . D 3 HOH A 263 763 289 HOH HOH . D 3 HOH A 264 764 119 HOH HOH . D 3 HOH A 265 765 262 HOH HOH . D 3 HOH A 266 766 286 HOH HOH . D 3 HOH A 267 767 172 HOH HOH . D 3 HOH A 268 768 269 HOH HOH . D 3 HOH A 269 769 239 HOH HOH . D 3 HOH A 270 770 185 HOH HOH . D 3 HOH A 271 771 166 HOH HOH . D 3 HOH A 272 772 74 HOH HOH . D 3 HOH A 273 773 169 HOH HOH . D 3 HOH A 274 774 192 HOH HOH . D 3 HOH A 275 775 281 HOH HOH . D 3 HOH A 276 776 213 HOH HOH . D 3 HOH A 277 777 196 HOH HOH . D 3 HOH A 278 778 258 HOH HOH . D 3 HOH A 279 779 235 HOH HOH . D 3 HOH A 280 780 270 HOH HOH . D 3 HOH A 281 781 252 HOH HOH . D 3 HOH A 282 782 31 HOH HOH . D 3 HOH A 283 783 209 HOH HOH . D 3 HOH A 284 784 198 HOH HOH . D 3 HOH A 285 785 236 HOH HOH . D 3 HOH A 286 786 257 HOH HOH . D 3 HOH A 287 787 260 HOH HOH . D 3 HOH A 288 788 282 HOH HOH . D 3 HOH A 289 789 189 HOH HOH . D 3 HOH A 290 790 215 HOH HOH . D 3 HOH A 291 791 292 HOH HOH . D 3 HOH A 292 792 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 52.067 23.463 33.703 1 22.63 ? P PO4 401 A 1 HETATM 2 O O1 PO4 . . . B 2 52.407 22.073 34.203 1 25.76 ? O1 PO4 401 A 1 HETATM 3 O O2 PO4 . . . B 2 50.68 23.453 33.114 1 23.84 ? O2 PO4 401 A 1 HETATM 4 O O3 PO4 . . . B 2 52.102 24.406 34.889 1 21.66 ? O3 PO4 401 A 1 HETATM 5 O O4 PO4 . . . B 2 53.081 23.918 32.683 1 25.24 ? O4 PO4 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #