data_5X93
#
_model_server_result.job_id            cR5tNyLigkGnkYjVlwmUOA 
_model_server_result.datetime_utc      '2024-10-22 03:36:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5x93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1209}' 
#
_entry.id    5X93 
#
_exptl.entry_id    5X93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5X93 
_cell.length_a            74.13 
_cell.length_b            147.48 
_cell.length_c            108.38 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5X93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 90 1_555 A SG CYS 406 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 112 A CYS 174 1_555 A SG CYS 193 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 405 n n 
C10 C9 OLC doub 406 n n 
C10 C11 OLC sing 407 n n 
C9 C8 OLC sing 408 n n 
C17 C16 OLC sing 409 z n 
C11 C12 OLC sing 410 n n 
C8 C7 OLC sing 411 n n 
C24 C22 OLC sing 412 n n 
C24 O25 OLC sing 413 n n 
C16 C15 OLC sing 414 n n 
C12 C13 OLC sing 415 n n 
C7 C6 OLC sing 416 n n 
C15 C14 OLC sing 417 n n 
C13 C14 OLC sing 418 n n 
C6 C5 OLC sing 419 n n 
C5 C4 OLC sing 420 n n 
C4 C3 OLC sing 421 n n 
C3 C2 OLC sing 422 n n 
C2 C1 OLC sing 423 n n 
C21 C22 OLC sing 424 n n 
C21 O20 OLC sing 425 n n 
C1 O19 OLC doub 426 n n 
C1 O20 OLC sing 427 n n 
C22 O23 OLC sing 428 n n 
C18 H18 OLC sing 429 n n 
C18 H18A OLC sing 430 n n 
C18 H18B OLC sing 431 n n 
C10 H10 OLC sing 432 n n 
C9 H9 OLC sing 433 n n 
C17 H17 OLC sing 434 n n 
C17 H17A OLC sing 435 n n 
C11 H11 OLC sing 436 n n 
C11 H11A OLC sing 437 n n 
C8 H8 OLC sing 438 n n 
C8 H8A OLC sing 439 n n 
C24 H24 OLC sing 440 n n 
C24 H24A OLC sing 441 n n 
C16 H16 OLC sing 442 n n 
C16 H16A OLC sing 443 n n 
C12 H12 OLC sing 444 n n 
C12 H12A OLC sing 445 n n 
C7 H7 OLC sing 446 n n 
C7 H7A OLC sing 447 n n 
C15 H15 OLC sing 448 n n 
C15 H15A OLC sing 449 n n 
C13 H13 OLC sing 450 n n 
C13 H13A OLC sing 451 n n 
C6 H6 OLC sing 452 n n 
C6 H6A OLC sing 453 n n 
C14 H14 OLC sing 454 n n 
C14 H14A OLC sing 455 n n 
C5 H5 OLC sing 456 n n 
C5 H5A OLC sing 457 n n 
C4 H4 OLC sing 458 n n 
C4 H4A OLC sing 459 n n 
C3 H3 OLC sing 460 n n 
C3 H3A OLC sing 461 n n 
C2 H2 OLC sing 462 n n 
C2 H2A OLC sing 463 n n 
C21 H21 OLC sing 464 n n 
C21 H21A OLC sing 465 n n 
C22 H22 OLC sing 466 n n 
O25 HO25 OLC sing 467 n n 
O23 HO23 OLC sing 468 n n 
#
_atom_sites.entry_id                     5X93 
_atom_sites.fract_transf_matrix[1][1]    0.01349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006781 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 K87 A 1 1201 1 K87 K87 . 
C 3 OLC A 1 1202 1 OLC OLC . 
D 3 OLC A 1 1203 2 OLC OLC . 
E 3 OLC A 1 1204 3 OLC OLC . 
F 3 OLC A 1 1205 4 OLC OLC . 
G 3 OLC A 1 1206 5 OLC OLC . 
H 3 OLC A 1 1207 6 OLC OLC . 
I 3 OLC A 1 1208 7 OLC OLC . 
J 3 OLC A 1 1209 8 OLC OLC . 
K 3 OLC A 1 1210 9 OLC OLC . 
L 3 OLC A 1 1211 10 OLC OLC . 
M 3 OLC A 1 1212 11 OLC OLC . 
N 4 CLR A 1 1213 12 CLR CLR . 
O 5 SO4 A 1 1214 107 SO4 SO4 . 
P 5 SO4 A 1 1215 108 SO4 SO4 . 
Q 5 SO4 A 1 1216 109 SO4 SO4 . 
R 5 SO4 A 1 1217 110 SO4 SO4 . 
S 5 SO4 A 1 1218 111 SO4 SO4 . 
T 6 HOH A 1 1301 62 HOH HOH . 
T 6 HOH A 2 1302 106 HOH HOH . 
T 6 HOH A 3 1303 75 HOH HOH . 
T 6 HOH A 4 1304 74 HOH HOH . 
T 6 HOH A 5 1305 45 HOH HOH . 
T 6 HOH A 6 1306 92 HOH HOH . 
T 6 HOH A 7 1307 101 HOH HOH . 
T 6 HOH A 8 1308 39 HOH HOH . 
T 6 HOH A 9 1309 95 HOH HOH . 
T 6 HOH A 10 1310 104 HOH HOH . 
T 6 HOH A 11 1311 2 HOH HOH . 
T 6 HOH A 12 1312 44 HOH HOH . 
T 6 HOH A 13 1313 81 HOH HOH . 
T 6 HOH A 14 1314 7 HOH HOH . 
T 6 HOH A 15 1315 18 HOH HOH . 
T 6 HOH A 16 1316 93 HOH HOH . 
T 6 HOH A 17 1317 99 HOH HOH . 
T 6 HOH A 18 1318 29 HOH HOH . 
T 6 HOH A 19 1319 14 HOH HOH . 
T 6 HOH A 20 1320 28 HOH HOH . 
T 6 HOH A 21 1321 34 HOH HOH . 
T 6 HOH A 22 1322 43 HOH HOH . 
T 6 HOH A 23 1323 12 HOH HOH . 
T 6 HOH A 24 1324 77 HOH HOH . 
T 6 HOH A 25 1325 24 HOH HOH . 
T 6 HOH A 26 1326 76 HOH HOH . 
T 6 HOH A 27 1327 55 HOH HOH . 
T 6 HOH A 28 1328 9 HOH HOH . 
T 6 HOH A 29 1329 35 HOH HOH . 
T 6 HOH A 30 1330 17 HOH HOH . 
T 6 HOH A 31 1331 89 HOH HOH . 
T 6 HOH A 32 1332 5 HOH HOH . 
T 6 HOH A 33 1333 30 HOH HOH . 
T 6 HOH A 34 1334 10 HOH HOH . 
T 6 HOH A 35 1335 97 HOH HOH . 
T 6 HOH A 36 1336 1 HOH HOH . 
T 6 HOH A 37 1337 21 HOH HOH . 
T 6 HOH A 38 1338 46 HOH HOH . 
T 6 HOH A 39 1339 13 HOH HOH . 
T 6 HOH A 40 1340 36 HOH HOH . 
T 6 HOH A 41 1341 19 HOH HOH . 
T 6 HOH A 42 1342 96 HOH HOH . 
T 6 HOH A 43 1343 79 HOH HOH . 
T 6 HOH A 44 1344 60 HOH HOH . 
T 6 HOH A 45 1345 23 HOH HOH . 
T 6 HOH A 46 1346 105 HOH HOH . 
T 6 HOH A 47 1347 22 HOH HOH . 
T 6 HOH A 48 1348 54 HOH HOH . 
T 6 HOH A 49 1349 82 HOH HOH . 
T 6 HOH A 50 1350 15 HOH HOH . 
T 6 HOH A 51 1351 83 HOH HOH . 
T 6 HOH A 52 1352 16 HOH HOH . 
T 6 HOH A 53 1353 4 HOH HOH . 
T 6 HOH A 54 1354 40 HOH HOH . 
T 6 HOH A 55 1355 56 HOH HOH . 
T 6 HOH A 56 1356 6 HOH HOH . 
T 6 HOH A 57 1357 8 HOH HOH . 
T 6 HOH A 58 1358 41 HOH HOH . 
T 6 HOH A 59 1359 20 HOH HOH . 
T 6 HOH A 60 1360 42 HOH HOH . 
T 6 HOH A 61 1361 70 HOH HOH . 
T 6 HOH A 62 1362 25 HOH HOH . 
T 6 HOH A 63 1363 3 HOH HOH . 
T 6 HOH A 64 1364 11 HOH HOH . 
T 6 HOH A 65 1365 65 HOH HOH . 
T 6 HOH A 66 1366 48 HOH HOH . 
T 6 HOH A 67 1367 31 HOH HOH . 
T 6 HOH A 68 1368 27 HOH HOH . 
T 6 HOH A 69 1369 37 HOH HOH . 
T 6 HOH A 70 1370 69 HOH HOH . 
T 6 HOH A 71 1371 90 HOH HOH . 
T 6 HOH A 72 1372 49 HOH HOH . 
T 6 HOH A 73 1373 100 HOH HOH . 
T 6 HOH A 74 1374 61 HOH HOH . 
T 6 HOH A 75 1375 66 HOH HOH . 
T 6 HOH A 76 1376 51 HOH HOH . 
T 6 HOH A 77 1377 47 HOH HOH . 
T 6 HOH A 78 1378 32 HOH HOH . 
T 6 HOH A 79 1379 58 HOH HOH . 
T 6 HOH A 80 1380 67 HOH HOH . 
T 6 HOH A 81 1381 94 HOH HOH . 
T 6 HOH A 82 1382 52 HOH HOH . 
T 6 HOH A 83 1383 84 HOH HOH . 
T 6 HOH A 84 1384 64 HOH HOH . 
T 6 HOH A 85 1385 72 HOH HOH . 
T 6 HOH A 86 1386 38 HOH HOH . 
T 6 HOH A 87 1387 68 HOH HOH . 
T 6 HOH A 88 1388 91 HOH HOH . 
T 6 HOH A 89 1389 85 HOH HOH . 
T 6 HOH A 90 1390 98 HOH HOH . 
T 6 HOH A 91 1391 80 HOH HOH . 
T 6 HOH A 92 1392 57 HOH HOH . 
T 6 HOH A 93 1393 86 HOH HOH . 
T 6 HOH A 94 1394 71 HOH HOH . 
T 6 HOH A 95 1395 78 HOH HOH . 
T 6 HOH A 96 1396 26 HOH HOH . 
T 6 HOH A 97 1397 73 HOH HOH . 
T 6 HOH A 98 1398 50 HOH HOH . 
T 6 HOH A 99 1399 33 HOH HOH . 
T 6 HOH A 100 1400 103 HOH HOH . 
T 6 HOH A 101 1401 53 HOH HOH . 
T 6 HOH A 102 1402 102 HOH HOH . 
T 6 HOH A 103 1403 63 HOH HOH . 
T 6 HOH A 104 1404 59 HOH HOH . 
T 6 HOH A 105 1405 88 HOH HOH . 
T 6 HOH A 106 1406 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . J 3 -14.25 31.133 -11.525 1 71.16 ? C18 OLC 1209 A 1 
HETATM 2 C C10 OLC . . . J 3 -18.638 37.733 -11.783 1 68.17 ? C10 OLC 1209 A 1 
HETATM 3 C C9 OLC . . . J 3 -18.595 39.019 -12.134 1 64.92 ? C9 OLC 1209 A 1 
HETATM 4 C C17 OLC . . . J 3 -14.677 31.915 -10.302 1 72.79 ? C17 OLC 1209 A 1 
HETATM 5 C C11 OLC . . . J 3 -17.846 37.2 -10.611 1 63.34 ? C11 OLC 1209 A 1 
HETATM 6 C C8 OLC . . . J 3 -17.744 40.016 -11.381 1 77.6 ? C8 OLC 1209 A 1 
HETATM 7 C C24 OLC . . . J 3 -16.663 51.425 -16.935 1 78.48 ? C24 OLC 1209 A 1 
HETATM 8 C C16 OLC . . . J 3 -16.193 32.063 -10.253 1 77.19 ? C16 OLC 1209 A 1 
HETATM 9 C C12 OLC . . . J 3 -18.671 36.145 -9.88 1 58.04 ? C12 OLC 1209 A 1 
HETATM 10 C C7 OLC . . . J 3 -16.951 40.876 -12.363 1 78.4 ? C7 OLC 1209 A 1 
HETATM 11 C C15 OLC . . . J 3 -16.635 33.063 -9.191 1 75.58 ? C15 OLC 1209 A 1 
HETATM 12 C C13 OLC . . . J 3 -17.804 35.278 -8.974 1 64.85 ? C13 OLC 1209 A 1 
HETATM 13 C C6 OLC . . . J 3 -16.284 42.053 -11.655 1 69.49 ? C6 OLC 1209 A 1 
HETATM 14 C C14 OLC . . . J 3 -16.811 34.455 -9.787 1 74.97 ? C14 OLC 1209 A 1 
HETATM 15 C C5 OLC . . . J 3 -15.209 42.707 -12.519 1 57.22 ? C5 OLC 1209 A 1 
HETATM 16 C C4 OLC . . . J 3 -15.795 43.695 -13.524 1 68.58 ? C4 OLC 1209 A 1 
HETATM 17 C C3 OLC . . . J 3 -15.833 45.117 -12.97 1 63.13 ? C3 OLC 1209 A 1 
HETATM 18 C C2 OLC . . . J 3 -16.778 45.994 -13.786 1 68.02 ? C2 OLC 1209 A 1 
HETATM 19 C C21 OLC . . . J 3 -16.131 49.241 -15.829 1 80.23 ? C21 OLC 1209 A 1 
HETATM 20 C C1 OLC . . . J 3 -16.046 47.165 -14.405 1 75.4 ? C1 OLC 1209 A 1 
HETATM 21 C C22 OLC . . . J 3 -17.119 49.987 -16.723 1 80.93 ? C22 OLC 1209 A 1 
HETATM 22 O O19 OLC . . . J 3 -14.864 47.356 -14.171 1 85.52 ? O19 OLC 1209 A 1 
HETATM 23 O O25 OLC . . . J 3 -17.713 52.178 -17.551 1 87.99 ? O25 OLC 1209 A 1 
HETATM 24 O O23 OLC . . . J 3 -17.19 49.343 -17.999 1 90.49 ? O23 OLC 1209 A 1 
HETATM 25 O O20 OLC . . . J 3 -16.758 48.076 -15.291 1 84.26 ? O20 OLC 1209 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#