data_5X93 # _model_server_result.job_id cjmhmhvoYAc-wBo0sB6U-A _model_server_result.datetime_utc '2024-11-21 14:03:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1213}' # _entry.id 5X93 # _exptl.entry_id 5X93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X93 _cell.length_a 74.13 _cell.length_b 147.48 _cell.length_c 108.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 90 1_555 A SG CYS 406 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 112 A CYS 174 1_555 A SG CYS 193 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 5X93 _atom_sites.fract_transf_matrix[1][1] 0.01349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K87 A 1 1201 1 K87 K87 . C 3 OLC A 1 1202 1 OLC OLC . D 3 OLC A 1 1203 2 OLC OLC . E 3 OLC A 1 1204 3 OLC OLC . F 3 OLC A 1 1205 4 OLC OLC . G 3 OLC A 1 1206 5 OLC OLC . H 3 OLC A 1 1207 6 OLC OLC . I 3 OLC A 1 1208 7 OLC OLC . J 3 OLC A 1 1209 8 OLC OLC . K 3 OLC A 1 1210 9 OLC OLC . L 3 OLC A 1 1211 10 OLC OLC . M 3 OLC A 1 1212 11 OLC OLC . N 4 CLR A 1 1213 12 CLR CLR . O 5 SO4 A 1 1214 107 SO4 SO4 . P 5 SO4 A 1 1215 108 SO4 SO4 . Q 5 SO4 A 1 1216 109 SO4 SO4 . R 5 SO4 A 1 1217 110 SO4 SO4 . S 5 SO4 A 1 1218 111 SO4 SO4 . T 6 HOH A 1 1301 62 HOH HOH . T 6 HOH A 2 1302 106 HOH HOH . T 6 HOH A 3 1303 75 HOH HOH . T 6 HOH A 4 1304 74 HOH HOH . T 6 HOH A 5 1305 45 HOH HOH . T 6 HOH A 6 1306 92 HOH HOH . T 6 HOH A 7 1307 101 HOH HOH . T 6 HOH A 8 1308 39 HOH HOH . T 6 HOH A 9 1309 95 HOH HOH . T 6 HOH A 10 1310 104 HOH HOH . T 6 HOH A 11 1311 2 HOH HOH . T 6 HOH A 12 1312 44 HOH HOH . T 6 HOH A 13 1313 81 HOH HOH . T 6 HOH A 14 1314 7 HOH HOH . T 6 HOH A 15 1315 18 HOH HOH . T 6 HOH A 16 1316 93 HOH HOH . T 6 HOH A 17 1317 99 HOH HOH . T 6 HOH A 18 1318 29 HOH HOH . T 6 HOH A 19 1319 14 HOH HOH . T 6 HOH A 20 1320 28 HOH HOH . T 6 HOH A 21 1321 34 HOH HOH . T 6 HOH A 22 1322 43 HOH HOH . T 6 HOH A 23 1323 12 HOH HOH . T 6 HOH A 24 1324 77 HOH HOH . T 6 HOH A 25 1325 24 HOH HOH . T 6 HOH A 26 1326 76 HOH HOH . T 6 HOH A 27 1327 55 HOH HOH . T 6 HOH A 28 1328 9 HOH HOH . T 6 HOH A 29 1329 35 HOH HOH . T 6 HOH A 30 1330 17 HOH HOH . T 6 HOH A 31 1331 89 HOH HOH . T 6 HOH A 32 1332 5 HOH HOH . T 6 HOH A 33 1333 30 HOH HOH . T 6 HOH A 34 1334 10 HOH HOH . T 6 HOH A 35 1335 97 HOH HOH . T 6 HOH A 36 1336 1 HOH HOH . T 6 HOH A 37 1337 21 HOH HOH . T 6 HOH A 38 1338 46 HOH HOH . T 6 HOH A 39 1339 13 HOH HOH . T 6 HOH A 40 1340 36 HOH HOH . T 6 HOH A 41 1341 19 HOH HOH . T 6 HOH A 42 1342 96 HOH HOH . T 6 HOH A 43 1343 79 HOH HOH . T 6 HOH A 44 1344 60 HOH HOH . T 6 HOH A 45 1345 23 HOH HOH . T 6 HOH A 46 1346 105 HOH HOH . T 6 HOH A 47 1347 22 HOH HOH . T 6 HOH A 48 1348 54 HOH HOH . T 6 HOH A 49 1349 82 HOH HOH . T 6 HOH A 50 1350 15 HOH HOH . T 6 HOH A 51 1351 83 HOH HOH . T 6 HOH A 52 1352 16 HOH HOH . T 6 HOH A 53 1353 4 HOH HOH . T 6 HOH A 54 1354 40 HOH HOH . T 6 HOH A 55 1355 56 HOH HOH . T 6 HOH A 56 1356 6 HOH HOH . T 6 HOH A 57 1357 8 HOH HOH . T 6 HOH A 58 1358 41 HOH HOH . T 6 HOH A 59 1359 20 HOH HOH . T 6 HOH A 60 1360 42 HOH HOH . T 6 HOH A 61 1361 70 HOH HOH . T 6 HOH A 62 1362 25 HOH HOH . T 6 HOH A 63 1363 3 HOH HOH . T 6 HOH A 64 1364 11 HOH HOH . T 6 HOH A 65 1365 65 HOH HOH . T 6 HOH A 66 1366 48 HOH HOH . T 6 HOH A 67 1367 31 HOH HOH . T 6 HOH A 68 1368 27 HOH HOH . T 6 HOH A 69 1369 37 HOH HOH . T 6 HOH A 70 1370 69 HOH HOH . T 6 HOH A 71 1371 90 HOH HOH . T 6 HOH A 72 1372 49 HOH HOH . T 6 HOH A 73 1373 100 HOH HOH . T 6 HOH A 74 1374 61 HOH HOH . T 6 HOH A 75 1375 66 HOH HOH . T 6 HOH A 76 1376 51 HOH HOH . T 6 HOH A 77 1377 47 HOH HOH . T 6 HOH A 78 1378 32 HOH HOH . T 6 HOH A 79 1379 58 HOH HOH . T 6 HOH A 80 1380 67 HOH HOH . T 6 HOH A 81 1381 94 HOH HOH . T 6 HOH A 82 1382 52 HOH HOH . T 6 HOH A 83 1383 84 HOH HOH . T 6 HOH A 84 1384 64 HOH HOH . T 6 HOH A 85 1385 72 HOH HOH . T 6 HOH A 86 1386 38 HOH HOH . T 6 HOH A 87 1387 68 HOH HOH . T 6 HOH A 88 1388 91 HOH HOH . T 6 HOH A 89 1389 85 HOH HOH . T 6 HOH A 90 1390 98 HOH HOH . T 6 HOH A 91 1391 80 HOH HOH . T 6 HOH A 92 1392 57 HOH HOH . T 6 HOH A 93 1393 86 HOH HOH . T 6 HOH A 94 1394 71 HOH HOH . T 6 HOH A 95 1395 78 HOH HOH . T 6 HOH A 96 1396 26 HOH HOH . T 6 HOH A 97 1397 73 HOH HOH . T 6 HOH A 98 1398 50 HOH HOH . T 6 HOH A 99 1399 33 HOH HOH . T 6 HOH A 100 1400 103 HOH HOH . T 6 HOH A 101 1401 53 HOH HOH . T 6 HOH A 102 1402 102 HOH HOH . T 6 HOH A 103 1403 63 HOH HOH . T 6 HOH A 104 1404 59 HOH HOH . T 6 HOH A 105 1405 88 HOH HOH . T 6 HOH A 106 1406 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . N 4 -20.569 45.211 -5.075 1 51.79 ? C1 CLR 1213 A 1 HETATM 2 C C2 CLR . . . N 4 -20.606 46.727 -5.231 1 54.84 ? C2 CLR 1213 A 1 HETATM 3 C C3 CLR . . . N 4 -20.78 47.432 -3.889 1 57.16 ? C3 CLR 1213 A 1 HETATM 4 C C4 CLR . . . N 4 -19.662 47.039 -2.931 1 51.3 ? C4 CLR 1213 A 1 HETATM 5 C C5 CLR . . . N 4 -19.515 45.539 -2.885 1 50.45 ? C5 CLR 1213 A 1 HETATM 6 C C6 CLR . . . N 4 -19.476 44.933 -1.687 1 42.18 ? C6 CLR 1213 A 1 HETATM 7 C C7 CLR . . . N 4 -18.984 43.522 -1.478 1 46.93 ? C7 CLR 1213 A 1 HETATM 8 C C8 CLR . . . N 4 -18.581 42.86 -2.785 1 53.18 ? C8 CLR 1213 A 1 HETATM 9 C C9 CLR . . . N 4 -19.467 43.293 -3.949 1 56.29 ? C9 CLR 1213 A 1 HETATM 10 C C10 CLR . . . N 4 -19.406 44.791 -4.187 1 58.22 ? C10 CLR 1213 A 1 HETATM 11 C C11 CLR . . . N 4 -19.107 42.537 -5.229 1 46.56 ? C11 CLR 1213 A 1 HETATM 12 C C12 CLR . . . N 4 -19.187 41.027 -5.025 1 45.95 ? C12 CLR 1213 A 1 HETATM 13 C C13 CLR . . . N 4 -18.278 40.621 -3.875 1 53.86 ? C13 CLR 1213 A 1 HETATM 14 C C14 CLR . . . N 4 -18.745 41.36 -2.641 1 47.32 ? C14 CLR 1213 A 1 HETATM 15 C C15 CLR . . . N 4 -18.041 40.684 -1.477 1 55.78 ? C15 CLR 1213 A 1 HETATM 16 C C16 CLR . . . N 4 -18.005 39.219 -1.911 1 56.72 ? C16 CLR 1213 A 1 HETATM 17 C C17 CLR . . . N 4 -18.359 39.175 -3.404 1 49.69 ? C17 CLR 1213 A 1 HETATM 18 C C18 CLR . . . N 4 -16.824 40.985 -4.179 1 45.93 ? C18 CLR 1213 A 1 HETATM 19 C C19 CLR . . . N 4 -18.079 45.16 -4.843 1 57.83 ? C19 CLR 1213 A 1 HETATM 20 C C20 CLR . . . N 4 -17.495 38.159 -4.148 1 45.3 ? C20 CLR 1213 A 1 HETATM 21 C C21 CLR . . . N 4 -17.909 37.929 -5.602 1 44.42 ? C21 CLR 1213 A 1 HETATM 22 C C22 CLR . . . N 4 -17.551 36.853 -3.367 1 47.72 ? C22 CLR 1213 A 1 HETATM 23 C C23 CLR . . . N 4 -17.296 35.645 -4.254 1 47.01 ? C23 CLR 1213 A 1 HETATM 24 C C24 CLR . . . N 4 -17.501 34.368 -3.455 1 55.51 ? C24 CLR 1213 A 1 HETATM 25 C C25 CLR . . . N 4 -16.748 33.216 -4.103 1 53.42 ? C25 CLR 1213 A 1 HETATM 26 C C26 CLR . . . N 4 -16.718 32.009 -3.176 1 57.35 ? C26 CLR 1213 A 1 HETATM 27 C C27 CLR . . . N 4 -17.348 32.858 -5.457 1 65.06 ? C27 CLR 1213 A 1 HETATM 28 O O1 CLR . . . N 4 -20.718 48.847 -4.092 1 59.87 ? O1 CLR 1213 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #