data_5X9I # _model_server_result.job_id YGJLoXEsYaNzN7HB1VvlcQ _model_server_result.datetime_utc '2024-10-28 02:25:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5X9I # _exptl.entry_id 5X9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.195 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-OXOOCTANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.96 _cell.angle_gamma 90 _cell.entry_id 5X9I _cell.length_a 150.788 _cell.length_b 52.42 _cell.length_c 99.205 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H14 O3' _chem_comp.formula_weight 158.195 _chem_comp.id OOA _chem_comp.mon_nstd_flag . _chem_comp.name '3-OXOOCTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OOA sing 250 n n C1 O3 OOA doub 251 n n C1 O31 OOA sing 252 n n C2 C3 OOA sing 253 n n C2 H2C1 OOA sing 254 n n C2 H2C2 OOA sing 255 n n C3 C4 OOA sing 256 n n C3 O1 OOA doub 257 n n C4 C5 OOA sing 258 n n C4 H4C1 OOA sing 259 n n C4 H4C2 OOA sing 260 n n C5 C6 OOA sing 261 n n C5 H5C1 OOA sing 262 n n C5 H5C2 OOA sing 263 n n C6 C7 OOA sing 264 n n C6 H6C1 OOA sing 265 n n C6 H6C2 OOA sing 266 n n C7 C8 OOA sing 267 n n C7 H7C1 OOA sing 268 n n C7 H7C2 OOA sing 269 n n C8 H8C1 OOA sing 270 n n C8 H8C2 OOA sing 271 n n C8 H8C3 OOA sing 272 n n O31 HO' OOA sing 273 n n # _atom_sites.entry_id 5X9I _atom_sites.fract_transf_matrix[1][1] 0.006632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003229 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OOA A 1 401 341 OOA OOA . D 3 GOL A 1 402 1 GOL GOL . E 2 OOA B 1 401 341 OOA OOA . F 3 GOL B 1 402 2 GOL GOL . G 4 HOH A 1 501 21 HOH HOH . G 4 HOH A 2 502 189 HOH HOH . G 4 HOH A 3 503 179 HOH HOH . G 4 HOH A 4 504 191 HOH HOH . G 4 HOH A 5 505 254 HOH HOH . G 4 HOH A 6 506 169 HOH HOH . G 4 HOH A 7 507 9 HOH HOH . G 4 HOH A 8 508 166 HOH HOH . G 4 HOH A 9 509 251 HOH HOH . G 4 HOH A 10 510 246 HOH HOH . G 4 HOH A 11 511 41 HOH HOH . G 4 HOH A 12 512 1 HOH HOH . G 4 HOH A 13 513 2 HOH HOH . G 4 HOH A 14 514 51 HOH HOH . G 4 HOH A 15 515 211 HOH HOH . G 4 HOH A 16 516 10 HOH HOH . G 4 HOH A 17 517 36 HOH HOH . G 4 HOH A 18 518 255 HOH HOH . G 4 HOH A 19 519 17 HOH HOH . G 4 HOH A 20 520 61 HOH HOH . G 4 HOH A 21 521 120 HOH HOH . G 4 HOH A 22 522 39 HOH HOH . G 4 HOH A 23 523 197 HOH HOH . G 4 HOH A 24 524 19 HOH HOH . G 4 HOH A 25 525 109 HOH HOH . G 4 HOH A 26 526 195 HOH HOH . G 4 HOH A 27 527 40 HOH HOH . G 4 HOH A 28 528 252 HOH HOH . G 4 HOH A 29 529 4 HOH HOH . G 4 HOH A 30 530 53 HOH HOH . G 4 HOH A 31 531 115 HOH HOH . G 4 HOH A 32 532 33 HOH HOH . G 4 HOH A 33 533 187 HOH HOH . G 4 HOH A 34 534 32 HOH HOH . G 4 HOH A 35 535 28 HOH HOH . G 4 HOH A 36 536 248 HOH HOH . G 4 HOH A 37 537 27 HOH HOH . G 4 HOH A 38 538 57 HOH HOH . G 4 HOH A 39 539 35 HOH HOH . G 4 HOH A 40 540 25 HOH HOH . G 4 HOH A 41 541 3 HOH HOH . G 4 HOH A 42 542 167 HOH HOH . G 4 HOH A 43 543 190 HOH HOH . G 4 HOH A 44 544 5 HOH HOH . G 4 HOH A 45 545 245 HOH HOH . G 4 HOH A 46 546 6 HOH HOH . G 4 HOH A 47 547 247 HOH HOH . G 4 HOH A 48 548 194 HOH HOH . G 4 HOH A 49 549 8 HOH HOH . G 4 HOH A 50 550 253 HOH HOH . G 4 HOH A 51 551 15 HOH HOH . G 4 HOH A 52 552 182 HOH HOH . G 4 HOH A 53 553 18 HOH HOH . G 4 HOH A 54 554 7 HOH HOH . G 4 HOH A 55 555 62 HOH HOH . G 4 HOH A 56 556 11 HOH HOH . G 4 HOH A 57 557 162 HOH HOH . G 4 HOH A 58 558 214 HOH HOH . G 4 HOH A 59 559 218 HOH HOH . G 4 HOH A 60 560 59 HOH HOH . G 4 HOH A 61 561 16 HOH HOH . G 4 HOH A 62 562 23 HOH HOH . G 4 HOH A 63 563 34 HOH HOH . G 4 HOH A 64 564 180 HOH HOH . G 4 HOH A 65 565 14 HOH HOH . G 4 HOH A 66 566 12 HOH HOH . G 4 HOH A 67 567 30 HOH HOH . G 4 HOH A 68 568 13 HOH HOH . G 4 HOH A 69 569 60 HOH HOH . G 4 HOH A 70 570 38 HOH HOH . G 4 HOH A 71 571 26 HOH HOH . G 4 HOH A 72 572 20 HOH HOH . G 4 HOH A 73 573 56 HOH HOH . G 4 HOH A 74 574 49 HOH HOH . G 4 HOH A 75 575 250 HOH HOH . G 4 HOH A 76 576 29 HOH HOH . G 4 HOH A 77 577 55 HOH HOH . G 4 HOH A 78 578 63 HOH HOH . G 4 HOH A 79 579 217 HOH HOH . G 4 HOH A 80 580 161 HOH HOH . G 4 HOH A 81 581 22 HOH HOH . G 4 HOH A 82 582 116 HOH HOH . G 4 HOH A 83 583 44 HOH HOH . G 4 HOH A 84 584 124 HOH HOH . G 4 HOH A 85 585 244 HOH HOH . G 4 HOH A 86 586 31 HOH HOH . G 4 HOH A 87 587 37 HOH HOH . G 4 HOH A 88 588 52 HOH HOH . G 4 HOH A 89 589 113 HOH HOH . G 4 HOH A 90 590 193 HOH HOH . G 4 HOH A 91 591 192 HOH HOH . G 4 HOH A 92 592 58 HOH HOH . G 4 HOH A 93 593 249 HOH HOH . G 4 HOH A 94 594 165 HOH HOH . G 4 HOH A 95 595 222 HOH HOH . H 4 HOH B 1 501 74 HOH HOH . H 4 HOH B 2 502 102 HOH HOH . H 4 HOH B 3 503 186 HOH HOH . H 4 HOH B 4 504 121 HOH HOH . H 4 HOH B 5 505 75 HOH HOH . H 4 HOH B 6 506 260 HOH HOH . H 4 HOH B 7 507 257 HOH HOH . H 4 HOH B 8 508 262 HOH HOH . H 4 HOH B 9 509 80 HOH HOH . H 4 HOH B 10 510 99 HOH HOH . H 4 HOH B 11 511 96 HOH HOH . H 4 HOH B 12 512 188 HOH HOH . H 4 HOH B 13 513 114 HOH HOH . H 4 HOH B 14 514 263 HOH HOH . H 4 HOH B 15 515 93 HOH HOH . H 4 HOH B 16 516 65 HOH HOH . H 4 HOH B 17 517 78 HOH HOH . H 4 HOH B 18 518 64 HOH HOH . H 4 HOH B 19 519 184 HOH HOH . H 4 HOH B 20 520 103 HOH HOH . H 4 HOH B 21 521 160 HOH HOH . H 4 HOH B 22 522 84 HOH HOH . H 4 HOH B 23 523 100 HOH HOH . H 4 HOH B 24 524 54 HOH HOH . H 4 HOH B 25 525 50 HOH HOH . H 4 HOH B 26 526 48 HOH HOH . H 4 HOH B 27 527 111 HOH HOH . H 4 HOH B 28 528 89 HOH HOH . H 4 HOH B 29 529 90 HOH HOH . H 4 HOH B 30 530 107 HOH HOH . H 4 HOH B 31 531 87 HOH HOH . H 4 HOH B 32 532 72 HOH HOH . H 4 HOH B 33 533 97 HOH HOH . H 4 HOH B 34 534 119 HOH HOH . H 4 HOH B 35 535 70 HOH HOH . H 4 HOH B 36 536 106 HOH HOH . H 4 HOH B 37 537 88 HOH HOH . H 4 HOH B 38 538 86 HOH HOH . H 4 HOH B 39 539 112 HOH HOH . H 4 HOH B 40 540 73 HOH HOH . H 4 HOH B 41 541 76 HOH HOH . H 4 HOH B 42 542 77 HOH HOH . H 4 HOH B 43 543 43 HOH HOH . H 4 HOH B 44 544 67 HOH HOH . H 4 HOH B 45 545 261 HOH HOH . H 4 HOH B 46 546 176 HOH HOH . H 4 HOH B 47 547 68 HOH HOH . H 4 HOH B 48 548 200 HOH HOH . H 4 HOH B 49 549 105 HOH HOH . H 4 HOH B 50 550 71 HOH HOH . H 4 HOH B 51 551 122 HOH HOH . H 4 HOH B 52 552 104 HOH HOH . H 4 HOH B 53 553 256 HOH HOH . H 4 HOH B 54 554 158 HOH HOH . H 4 HOH B 55 555 83 HOH HOH . H 4 HOH B 56 556 108 HOH HOH . H 4 HOH B 57 557 94 HOH HOH . H 4 HOH B 58 558 101 HOH HOH . H 4 HOH B 59 559 123 HOH HOH . H 4 HOH B 60 560 81 HOH HOH . H 4 HOH B 61 561 82 HOH HOH . H 4 HOH B 62 562 69 HOH HOH . H 4 HOH B 63 563 79 HOH HOH . H 4 HOH B 64 564 47 HOH HOH . H 4 HOH B 65 565 177 HOH HOH . H 4 HOH B 66 566 42 HOH HOH . H 4 HOH B 67 567 66 HOH HOH . H 4 HOH B 68 568 45 HOH HOH . H 4 HOH B 69 569 117 HOH HOH . H 4 HOH B 70 570 259 HOH HOH . H 4 HOH B 71 571 85 HOH HOH . H 4 HOH B 72 572 118 HOH HOH . H 4 HOH B 73 573 98 HOH HOH . H 4 HOH B 74 574 258 HOH HOH . H 4 HOH B 75 575 92 HOH HOH . H 4 HOH B 76 576 95 HOH HOH . H 4 HOH B 77 577 201 HOH HOH . H 4 HOH B 78 578 110 HOH HOH . H 4 HOH B 79 579 91 HOH HOH . H 4 HOH B 80 580 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OOA . . . E 2 186.368 1.977 16.023 1 23.57 ? C1 OOA 401 B 1 HETATM 2 C C2 OOA . . . E 2 187.679 1.236 16.248 1 28.22 ? C2 OOA 401 B 1 HETATM 3 C C3 OOA . . . E 2 188.924 1.999 16.566 1 36.99 ? C3 OOA 401 B 1 HETATM 4 C C4 OOA . . . E 2 189.66 1.783 17.865 1 38.82 ? C4 OOA 401 B 1 HETATM 5 O O1 OOA . . . E 2 189.411 2.721 15.755 1 56.82 ? O1 OOA 401 B 1 HETATM 6 C C5 OOA . . . E 2 189.665 3.048 18.702 1 34.95 ? C5 OOA 401 B 1 HETATM 7 C C6 OOA . . . E 2 188.422 3.189 19.559 1 35.2 ? C6 OOA 401 B 1 HETATM 8 C C7 OOA . . . E 2 188.116 4.581 20.061 1 36.69 ? C7 OOA 401 B 1 HETATM 9 C C8 OOA . . . E 2 188.998 5.153 21.12 1 33.64 ? C8 OOA 401 B 1 HETATM 10 O O3 OOA . . . E 2 185.951 1.947 14.866 1 20.36 ? O3 OOA 401 B 1 HETATM 11 O O31 OOA . . . E 2 185.688 2.465 16.986 1 21.11 ? O31 OOA 401 B 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #