data_5X9W # _model_server_result.job_id ly7Xq308ZdzDe3G_U3Ujrg _model_server_result.datetime_utc '2024-10-11 05:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5x9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 5X9W # _exptl.entry_id 5X9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5X9W _cell.length_a 89.51 _cell.length_b 102.07 _cell.length_c 235.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5X9W _atom_sites.fract_transf_matrix[1][1] 0.011172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 901 901 ANP ANP . D 2 ANP B 1 901 901 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 2 18.671 -29.366 -54.148 1 98.29 ? PG ANP 901 B 1 HETATM 2 O O1G ANP . . . D 2 18.506 -30.341 -55.311 1 90.46 ? O1G ANP 901 B 1 HETATM 3 O O2G ANP . . . D 2 19.346 -30.002 -52.951 1 96.61 ? O2G ANP 901 B 1 HETATM 4 O O3G ANP . . . D 2 19.262 -28.013 -54.541 1 98.34 ? O3G ANP 901 B 1 HETATM 5 P PB ANP . . . D 2 15.998 -27.76 -54.47 1 82.69 ? PB ANP 901 B 1 HETATM 6 O O1B ANP . . . D 2 15.133 -28.439 -55.503 1 73.7 ? O1B ANP 901 B 1 HETATM 7 O O2B ANP . . . D 2 16.91 -26.63 -54.878 1 78.16 ? O2B ANP 901 B 1 HETATM 8 N N3B ANP . . . D 2 17.056 -28.886 -53.57 1 93.38 ? N3B ANP 901 B 1 HETATM 9 P PA ANP . . . D 2 14.498 -28.235 -52.133 1 89.72 ? PA ANP 901 B 1 HETATM 10 O O1A ANP . . . D 2 14.039 -29.594 -52.619 1 89.56 ? O1A ANP 901 B 1 HETATM 11 O O2A ANP . . . D 2 15.684 -28.137 -51.205 1 89.74 ? O2A ANP 901 B 1 HETATM 12 O O3A ANP . . . D 2 14.875 -27.295 -53.41 1 84.15 ? O3A ANP 901 B 1 HETATM 13 O O5' ANP . . . D 2 13.246 -27.406 -51.51 1 89.13 ? O5' ANP 901 B 1 HETATM 14 C C5' ANP . . . D 2 13.24 -26.861 -50.192 1 92.07 ? C5' ANP 901 B 1 HETATM 15 C C4' ANP . . . D 2 11.789 -26.63 -49.686 1 92.97 ? C4' ANP 901 B 1 HETATM 16 O O4' ANP . . . D 2 10.82 -27.001 -50.672 1 95.72 ? O4' ANP 901 B 1 HETATM 17 C C3' ANP . . . D 2 11.466 -27.432 -48.416 1 102.6 ? C3' ANP 901 B 1 HETATM 18 O O3' ANP . . . D 2 11.626 -26.709 -47.184 1 95.75 ? O3' ANP 901 B 1 HETATM 19 C C2' ANP . . . D 2 10.041 -27.905 -48.637 1 112.21 ? C2' ANP 901 B 1 HETATM 20 O O2' ANP . . . D 2 9.169 -27.389 -47.648 1 130.61 ? O2' ANP 901 B 1 HETATM 21 C C1' ANP . . . D 2 9.641 -27.463 -50.016 1 107.65 ? C1' ANP 901 B 1 HETATM 22 N N9 ANP . . . D 2 9.198 -28.588 -50.733 1 118.49 ? N9 ANP 901 B 1 HETATM 23 C C8 ANP . . . D 2 10.03 -29.488 -51.223 1 132.97 ? C8 ANP 901 B 1 HETATM 24 N N7 ANP . . . D 2 9.298 -30.369 -51.821 1 128.72 ? N7 ANP 901 B 1 HETATM 25 C C5 ANP . . . D 2 8.029 -30.12 -51.651 1 126.12 ? C5 ANP 901 B 1 HETATM 26 C C6 ANP . . . D 2 6.755 -30.728 -51.932 1 131.35 ? C6 ANP 901 B 1 HETATM 27 N N6 ANP . . . D 2 6.768 -31.784 -52.623 1 139.05 ? N6 ANP 901 B 1 HETATM 28 N N1 ANP . . . D 2 5.608 -30.196 -51.604 1 125.5 ? N1 ANP 901 B 1 HETATM 29 C C2 ANP . . . D 2 5.656 -29.141 -50.995 1 120.38 ? C2 ANP 901 B 1 HETATM 30 N N3 ANP . . . D 2 6.788 -28.506 -50.69 1 111.53 ? N3 ANP 901 B 1 HETATM 31 C C4 ANP . . . D 2 7.957 -28.957 -50.953 1 114.46 ? C4 ANP 901 B 1 # _model_server_stats.io_time_ms 189 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #