data_5XA8
#
_model_server_result.job_id            iXSeqn5rjISQK6ZfeT_Uxw 
_model_server_result.datetime_utc      '2024-10-12 16:32:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xa8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    5XA8 
#
_exptl.entry_id    5XA8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.31 
_cell.angle_gamma         90 
_cell.entry_id            5XA8 
_cell.length_a            162.97 
_cell.length_b            75.02 
_cell.length_c            152.24 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XA8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A O VAL 305 A VAL 304 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc2 A O ALA 306 A ALA 305 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
metalc ? metalc3 A O ILE 308 A ILE 307 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc4 A OE1 GLU 310 A GLU 309 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
metalc ? metalc5 A OE2 GLU 310 A GLU 309 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc6 A OD2 ASP 352 A ASP 351 1_555 F MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc7 A O THR 354 A THR 353 1_555 F MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc8 A OD1 ASP 704 A ASP 703 1_555 F MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc9 A OD2 ASP 704 A ASP 703 1_555 F MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc10 A OD1 ASN 769 A ASN 768 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc11 A OE2 GLU 772 A GLU 771 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc12 A OD1 ASN 797 A ASN 796 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc13 A OG1 THR 800 A THR 799 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc14 A OD1 ASP 801 A ASP 800 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc15 A OD2 ASP 801 A ASP 800 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc16 A OE2 GLU 909 A GLU 908 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc17 B CA CA . A CA 1001 1_555 BB O HOH . A HOH 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc18 B CA CA . A CA 1001 1_555 BB O HOH . A HOH 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc19 D MG MG . A MG 1003 1_555 G O1A ADP . A ADP 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc20 D MG MG . A MG 1003 1_555 G O3A ADP . A ADP 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc21 D MG MG . A MG 1003 1_555 G O3B ADP . A ADP 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc22 D MG MG . A MG 1003 1_555 BB O HOH . A HOH 1127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? 
metalc ? metalc23 D MG MG . A MG 1003 1_555 BB O HOH . A HOH 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? 
metalc ? metalc24 D MG MG . A MG 1003 1_555 BB O HOH . A HOH 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc25 F MG MG . A MG 1005 1_555 BB O HOH . A HOH 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc26 F MG MG . A MG 1005 1_555 BB O HOH . A HOH 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XA8 
_atom_sites.fract_transf_matrix[1][1]    0.006136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00215 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01333 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1001 995 CA CA . 
C 2 CA A 1 1002 996 CA CA . 
D 3 MG A 1 1003 997 MG MG . 
E 4 ALF A 1 1004 998 ALF ALF . 
F 3 MG A 1 1005 999 MG MG . 
G 5 ADP A 1 1006 1000 ADP ADP . 
H 6 PCW A 1 1007 1121 PCW PCW . 
I 6 PCW A 1 1008 1122 PCW PCW . 
J 6 PCW A 1 1009 1123 PCW PCW . 
K 6 PCW A 1 1010 1124 PCW PCW . 
L 6 PCW A 1 1011 1125 PCW PCW . 
M 6 PCW A 1 1012 1126 PCW PCW . 
N 6 PCW A 1 1013 1127 PCW PCW . 
O 6 PCW A 1 1014 1128 PCW PCW . 
P 6 PCW A 1 1015 1129 PCW PCW . 
Q 6 PCW A 1 1016 1130 PCW PCW . 
R 6 PCW A 1 1017 1131 PCW PCW . 
S 6 PCW A 1 1018 1132 PCW PCW . 
T 6 PCW A 1 1019 1133 PCW PCW . 
U 6 PCW A 1 1020 1134 PCW PCW . 
V 6 PCW A 1 1021 1135 PCW PCW . 
W 6 PCW A 1 1022 1136 PCW PCW . 
X 6 PCW A 1 1023 1137 PCW PCW . 
Y 6 PCW A 1 1024 1138 PCW PCW . 
Z 6 PCW A 1 1025 1139 PCW PCW . 
AA 6 PCW A 1 1026 1140 PCW PCW . 
BA 6 PCW A 1 1027 1141 PCW PCW . 
CA 6 PCW A 1 1028 1142 PCW PCW . 
DA 6 PCW A 1 1029 1143 PCW PCW . 
EA 6 PCW A 1 1030 1144 PCW PCW . 
FA 6 PCW A 1 1031 1145 PCW PCW . 
GA 6 PCW A 1 1032 1146 PCW PCW . 
HA 6 PCW A 1 1033 1147 PCW PCW . 
IA 6 PCW A 1 1034 1148 PCW PCW . 
JA 6 PCW A 1 1035 1149 PCW PCW . 
KA 6 PCW A 1 1036 1150 PCW PCW . 
LA 6 PCW A 1 1037 1151 PCW PCW . 
MA 6 PCW A 1 1038 1152 PCW PCW . 
NA 6 PCW A 1 1039 1153 PCW PCW . 
OA 6 PCW A 1 1040 1154 PCW PCW . 
PA 6 PCW A 1 1041 1155 PCW PCW . 
QA 6 PCW A 1 1042 1156 PCW PCW . 
RA 6 PCW A 1 1043 1157 PCW PCW . 
SA 6 PCW A 1 1044 1158 PCW PCW . 
TA 6 PCW A 1 1045 1159 PCW PCW . 
UA 6 PCW A 1 1046 1160 PCW PCW . 
VA 6 PCW A 1 1047 1161 PCW PCW . 
WA 6 PCW A 1 1048 1162 PCW PCW . 
XA 6 PCW A 1 1049 1163 PCW PCW . 
YA 6 PCW A 1 1050 1164 PCW PCW . 
ZA 6 PCW A 1 1051 1165 PCW PCW . 
AB 6 PCW A 1 1052 1166 PCW PCW . 
BB 7 HOH A 1 1101 1093 HOH HOH . 
BB 7 HOH A 2 1102 1039 HOH HOH . 
BB 7 HOH A 3 1103 1105 HOH HOH . 
BB 7 HOH A 4 1104 1077 HOH HOH . 
BB 7 HOH A 5 1105 1054 HOH HOH . 
BB 7 HOH A 6 1106 1100 HOH HOH . 
BB 7 HOH A 7 1107 1029 HOH HOH . 
BB 7 HOH A 8 1108 1040 HOH HOH . 
BB 7 HOH A 9 1109 1065 HOH HOH . 
BB 7 HOH A 10 1110 1074 HOH HOH . 
BB 7 HOH A 11 1111 1059 HOH HOH . 
BB 7 HOH A 12 1112 1001 HOH HOH . 
BB 7 HOH A 13 1113 1030 HOH HOH . 
BB 7 HOH A 14 1114 1009 HOH HOH . 
BB 7 HOH A 15 1115 1118 HOH HOH . 
BB 7 HOH A 16 1116 1057 HOH HOH . 
BB 7 HOH A 17 1117 1063 HOH HOH . 
BB 7 HOH A 18 1118 1041 HOH HOH . 
BB 7 HOH A 19 1119 1084 HOH HOH . 
BB 7 HOH A 20 1120 1033 HOH HOH . 
BB 7 HOH A 21 1121 1061 HOH HOH . 
BB 7 HOH A 22 1122 1004 HOH HOH . 
BB 7 HOH A 23 1123 1023 HOH HOH . 
BB 7 HOH A 24 1124 1119 HOH HOH . 
BB 7 HOH A 25 1125 1086 HOH HOH . 
BB 7 HOH A 26 1126 1035 HOH HOH . 
BB 7 HOH A 27 1127 1006 HOH HOH . 
BB 7 HOH A 28 1128 1081 HOH HOH . 
BB 7 HOH A 29 1129 1110 HOH HOH . 
BB 7 HOH A 30 1130 1090 HOH HOH . 
BB 7 HOH A 31 1131 1026 HOH HOH . 
BB 7 HOH A 32 1132 1014 HOH HOH . 
BB 7 HOH A 33 1133 1106 HOH HOH . 
BB 7 HOH A 34 1134 1096 HOH HOH . 
BB 7 HOH A 35 1135 1012 HOH HOH . 
BB 7 HOH A 36 1136 1022 HOH HOH . 
BB 7 HOH A 37 1137 1015 HOH HOH . 
BB 7 HOH A 38 1138 1019 HOH HOH . 
BB 7 HOH A 39 1139 1002 HOH HOH . 
BB 7 HOH A 40 1140 1007 HOH HOH . 
BB 7 HOH A 41 1141 1005 HOH HOH . 
BB 7 HOH A 42 1142 1032 HOH HOH . 
BB 7 HOH A 43 1143 1098 HOH HOH . 
BB 7 HOH A 44 1144 1025 HOH HOH . 
BB 7 HOH A 45 1145 1115 HOH HOH . 
BB 7 HOH A 46 1146 1008 HOH HOH . 
BB 7 HOH A 47 1147 1037 HOH HOH . 
BB 7 HOH A 48 1148 1046 HOH HOH . 
BB 7 HOH A 49 1149 1064 HOH HOH . 
BB 7 HOH A 50 1150 1044 HOH HOH . 
BB 7 HOH A 51 1151 1083 HOH HOH . 
BB 7 HOH A 52 1152 1020 HOH HOH . 
BB 7 HOH A 53 1153 1102 HOH HOH . 
BB 7 HOH A 54 1154 1053 HOH HOH . 
BB 7 HOH A 55 1155 1111 HOH HOH . 
BB 7 HOH A 56 1156 1011 HOH HOH . 
BB 7 HOH A 57 1157 1036 HOH HOH . 
BB 7 HOH A 58 1158 1045 HOH HOH . 
BB 7 HOH A 59 1159 1087 HOH HOH . 
BB 7 HOH A 60 1160 1104 HOH HOH . 
BB 7 HOH A 61 1161 1075 HOH HOH . 
BB 7 HOH A 62 1162 1097 HOH HOH . 
BB 7 HOH A 63 1163 1068 HOH HOH . 
BB 7 HOH A 64 1164 1050 HOH HOH . 
BB 7 HOH A 65 1165 1072 HOH HOH . 
BB 7 HOH A 66 1166 1043 HOH HOH . 
BB 7 HOH A 67 1167 1091 HOH HOH . 
BB 7 HOH A 68 1168 1089 HOH HOH . 
BB 7 HOH A 69 1169 1062 HOH HOH . 
BB 7 HOH A 70 1170 1034 HOH HOH . 
BB 7 HOH A 71 1171 1078 HOH HOH . 
BB 7 HOH A 72 1172 1048 HOH HOH . 
BB 7 HOH A 73 1173 1103 HOH HOH . 
BB 7 HOH A 74 1174 1058 HOH HOH . 
BB 7 HOH A 75 1175 1067 HOH HOH . 
BB 7 HOH A 76 1176 1116 HOH HOH . 
BB 7 HOH A 77 1177 1024 HOH HOH . 
BB 7 HOH A 78 1178 1047 HOH HOH . 
BB 7 HOH A 79 1179 1113 HOH HOH . 
BB 7 HOH A 80 1180 1070 HOH HOH . 
BB 7 HOH A 81 1181 1114 HOH HOH . 
BB 7 HOH A 82 1182 1092 HOH HOH . 
BB 7 HOH A 83 1183 1082 HOH HOH . 
BB 7 HOH A 84 1184 1095 HOH HOH . 
BB 7 HOH A 85 1185 1018 HOH HOH . 
BB 7 HOH A 86 1186 1071 HOH HOH . 
BB 7 HOH A 87 1187 1049 HOH HOH . 
BB 7 HOH A 88 1188 1027 HOH HOH . 
BB 7 HOH A 89 1189 1117 HOH HOH . 
BB 7 HOH A 90 1190 1010 HOH HOH . 
BB 7 HOH A 91 1191 1107 HOH HOH . 
BB 7 HOH A 92 1192 1079 HOH HOH . 
BB 7 HOH A 93 1193 1094 HOH HOH . 
BB 7 HOH A 94 1194 1076 HOH HOH . 
BB 7 HOH A 95 1195 1101 HOH HOH . 
BB 7 HOH A 96 1196 1085 HOH HOH . 
BB 7 HOH A 97 1197 1080 HOH HOH . 
BB 7 HOH A 98 1198 1069 HOH HOH . 
BB 7 HOH A 99 1199 1088 HOH HOH . 
BB 7 HOH A 100 1200 1042 HOH HOH . 
BB 7 HOH A 101 1201 1052 HOH HOH . 
BB 7 HOH A 102 1202 1099 HOH HOH . 
BB 7 HOH A 103 1203 1056 HOH HOH . 
BB 7 HOH A 104 1204 1060 HOH HOH . 
BB 7 HOH A 105 1205 1112 HOH HOH . 
BB 7 HOH A 106 1206 1028 HOH HOH . 
BB 7 HOH A 107 1207 1017 HOH HOH . 
BB 7 HOH A 108 1208 1021 HOH HOH . 
BB 7 HOH A 109 1209 1013 HOH HOH . 
BB 7 HOH A 110 1210 1038 HOH HOH . 
BB 7 HOH A 111 1211 1003 HOH HOH . 
BB 7 HOH A 112 1212 1031 HOH HOH . 
BB 7 HOH A 113 1213 1109 HOH HOH . 
BB 7 HOH A 114 1214 1055 HOH HOH . 
BB 7 HOH A 115 1215 1066 HOH HOH . 
BB 7 HOH A 116 1216 1051 HOH HOH . 
BB 7 HOH A 117 1217 1016 HOH HOH . 
BB 7 HOH A 118 1218 1108 HOH HOH . 
BB 7 HOH A 119 1219 1073 HOH HOH . 
BB 7 HOH A 120 1220 1120 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               61.888 
_atom_site.Cartn_y               31.983 
_atom_site.Cartn_z               2.311 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        73.91 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#