data_5XAB
#
_model_server_result.job_id            VARjDelQ_vxyepSSvbEJmg 
_model_server_result.datetime_utc      '2024-11-04 23:33:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xab 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    5XAB 
#
_exptl.entry_id    5XAB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XAB 
_cell.length_a            71.358 
_cell.length_b            71.358 
_cell.length_c            586.79 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XAB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A O LEU 712 A LEU 711 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc2 A O LYS 713 A LYS 712 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc3 A O ALA 715 A ALA 714 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc4 A OE1 GLU 733 A GLU 732 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc5 B NA NA . A NA 1001 1_555 HA O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc6 B NA NA . A NA 1001 1_555 HA O HOH . A HOH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XAB 
_atom_sites.fract_transf_matrix[1][1]    0.014014 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001704 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 1001 1001 NA NA . 
C 3 TG1 A 1 1002 1002 TG1 TG1 . 
D 4 PCW A 1 1003 1003 PCW PCW . 
E 4 PCW A 1 1004 1004 PCW PCW . 
F 4 PCW A 1 1005 1005 PCW PCW . 
G 4 PCW A 1 1006 1006 PCW PCW . 
H 4 PCW A 1 1007 1007 PCW PCW . 
I 4 PCW A 1 1008 1008 PCW PCW . 
J 4 PCW A 1 1009 1009 PCW PCW . 
K 4 PCW A 1 1010 1010 PCW PCW . 
L 4 PCW A 1 1011 1011 PCW PCW . 
M 4 PCW A 1 1012 1012 PCW PCW . 
N 4 PCW A 1 1013 1013 PCW PCW . 
O 4 PCW A 1 1014 1014 PCW PCW . 
P 4 PCW A 1 1015 1015 PCW PCW . 
Q 4 PCW A 1 1016 1016 PCW PCW . 
R 4 PCW A 1 1017 1017 PCW PCW . 
S 4 PCW A 1 1018 1018 PCW PCW . 
T 4 PCW A 1 1019 1019 PCW PCW . 
U 4 PCW A 1 1020 1020 PCW PCW . 
V 4 PCW A 1 1021 1021 PCW PCW . 
W 4 PCW A 1 1022 1022 PCW PCW . 
X 4 PCW A 1 1023 1023 PCW PCW . 
Y 4 PCW A 1 1024 1024 PCW PCW . 
Z 4 PCW A 1 1025 1025 PCW PCW . 
AA 4 PCW A 1 1026 1026 PCW PCW . 
BA 4 PCW A 1 1027 1027 PCW PCW . 
CA 4 PCW A 1 1028 1028 PCW PCW . 
DA 4 PCW A 1 1029 1029 PCW PCW . 
EA 4 PCW A 1 1030 1030 PCW PCW . 
FA 4 PCW A 1 1031 1031 PCW PCW . 
GA 4 PCW A 1 1032 1032 PCW PCW . 
HA 5 HOH A 1 1101 1101 HOH HOH . 
HA 5 HOH A 2 1102 1102 HOH HOH . 
HA 5 HOH A 3 1103 1103 HOH HOH . 
HA 5 HOH A 4 1104 1104 HOH HOH . 
HA 5 HOH A 5 1105 1105 HOH HOH . 
HA 5 HOH A 6 1106 1106 HOH HOH . 
HA 5 HOH A 7 1107 1107 HOH HOH . 
HA 5 HOH A 8 1108 1108 HOH HOH . 
HA 5 HOH A 9 1109 1109 HOH HOH . 
HA 5 HOH A 10 1110 1110 HOH HOH . 
HA 5 HOH A 11 1111 1111 HOH HOH . 
HA 5 HOH A 12 1112 1112 HOH HOH . 
HA 5 HOH A 13 1113 1113 HOH HOH . 
HA 5 HOH A 14 1114 1114 HOH HOH . 
HA 5 HOH A 15 1115 1115 HOH HOH . 
HA 5 HOH A 16 1116 1116 HOH HOH . 
HA 5 HOH A 17 1117 1117 HOH HOH . 
HA 5 HOH A 18 1118 1118 HOH HOH . 
HA 5 HOH A 19 1119 1119 HOH HOH . 
HA 5 HOH A 20 1120 1120 HOH HOH . 
HA 5 HOH A 21 1121 1121 HOH HOH . 
HA 5 HOH A 22 1122 1122 HOH HOH . 
HA 5 HOH A 23 1123 1123 HOH HOH . 
HA 5 HOH A 24 1124 1124 HOH HOH . 
HA 5 HOH A 25 1125 1125 HOH HOH . 
HA 5 HOH A 26 1126 1126 HOH HOH . 
HA 5 HOH A 27 1127 1127 HOH HOH . 
HA 5 HOH A 28 1128 1128 HOH HOH . 
HA 5 HOH A 29 1129 1129 HOH HOH . 
HA 5 HOH A 30 1130 1130 HOH HOH . 
HA 5 HOH A 31 1131 1131 HOH HOH . 
HA 5 HOH A 32 1132 1132 HOH HOH . 
HA 5 HOH A 33 1133 1133 HOH HOH . 
HA 5 HOH A 34 1134 1134 HOH HOH . 
HA 5 HOH A 35 1135 1135 HOH HOH . 
HA 5 HOH A 36 1136 1136 HOH HOH . 
HA 5 HOH A 37 1137 1137 HOH HOH . 
HA 5 HOH A 38 1138 1138 HOH HOH . 
HA 5 HOH A 39 1139 1139 HOH HOH . 
HA 5 HOH A 40 1140 1140 HOH HOH . 
HA 5 HOH A 41 1141 1141 HOH HOH . 
HA 5 HOH A 42 1142 1142 HOH HOH . 
HA 5 HOH A 43 1143 1143 HOH HOH . 
HA 5 HOH A 44 1144 1144 HOH HOH . 
HA 5 HOH A 45 1145 1145 HOH HOH . 
HA 5 HOH A 46 1146 1146 HOH HOH . 
HA 5 HOH A 47 1147 1147 HOH HOH . 
HA 5 HOH A 48 1148 1148 HOH HOH . 
HA 5 HOH A 49 1149 1149 HOH HOH . 
HA 5 HOH A 50 1150 1150 HOH HOH . 
HA 5 HOH A 51 1151 1151 HOH HOH . 
HA 5 HOH A 52 1152 1152 HOH HOH . 
HA 5 HOH A 53 1153 1153 HOH HOH . 
HA 5 HOH A 54 1154 1154 HOH HOH . 
HA 5 HOH A 55 1155 1155 HOH HOH . 
HA 5 HOH A 56 1156 1156 HOH HOH . 
HA 5 HOH A 57 1157 1157 HOH HOH . 
HA 5 HOH A 58 1158 1158 HOH HOH . 
HA 5 HOH A 59 1159 1159 HOH HOH . 
HA 5 HOH A 60 1160 1160 HOH HOH . 
HA 5 HOH A 61 1161 1161 HOH HOH . 
HA 5 HOH A 62 1162 1162 HOH HOH . 
HA 5 HOH A 63 1163 1163 HOH HOH . 
HA 5 HOH A 64 1164 1164 HOH HOH . 
HA 5 HOH A 65 1165 1165 HOH HOH . 
HA 5 HOH A 66 1166 1166 HOH HOH . 
HA 5 HOH A 67 1167 1167 HOH HOH . 
HA 5 HOH A 68 1168 1168 HOH HOH . 
HA 5 HOH A 69 1169 1169 HOH HOH . 
HA 5 HOH A 70 1170 1170 HOH HOH . 
HA 5 HOH A 71 1171 1171 HOH HOH . 
HA 5 HOH A 72 1172 1172 HOH HOH . 
HA 5 HOH A 73 1173 1173 HOH HOH . 
HA 5 HOH A 74 1174 1174 HOH HOH . 
HA 5 HOH A 75 1175 1175 HOH HOH . 
HA 5 HOH A 76 1176 1176 HOH HOH . 
HA 5 HOH A 77 1177 1177 HOH HOH . 
HA 5 HOH A 78 1178 1178 HOH HOH . 
HA 5 HOH A 79 1179 1179 HOH HOH . 
HA 5 HOH A 80 1180 1180 HOH HOH . 
HA 5 HOH A 81 1181 1181 HOH HOH . 
HA 5 HOH A 82 1182 1182 HOH HOH . 
HA 5 HOH A 83 1183 1183 HOH HOH . 
HA 5 HOH A 84 1184 1184 HOH HOH . 
HA 5 HOH A 85 1185 1185 HOH HOH . 
HA 5 HOH A 86 1186 1186 HOH HOH . 
HA 5 HOH A 87 1187 1187 HOH HOH . 
HA 5 HOH A 88 1188 1188 HOH HOH . 
HA 5 HOH A 89 1189 1189 HOH HOH . 
HA 5 HOH A 90 1190 1190 HOH HOH . 
HA 5 HOH A 91 1191 1191 HOH HOH . 
HA 5 HOH A 92 1192 1192 HOH HOH . 
HA 5 HOH A 93 1193 1193 HOH HOH . 
HA 5 HOH A 94 1194 1194 HOH HOH . 
HA 5 HOH A 95 1195 1195 HOH HOH . 
HA 5 HOH A 96 1196 1196 HOH HOH . 
HA 5 HOH A 97 1197 1197 HOH HOH . 
HA 5 HOH A 98 1198 1198 HOH HOH . 
HA 5 HOH A 99 1199 1199 HOH HOH . 
HA 5 HOH A 100 1200 1200 HOH HOH . 
HA 5 HOH A 101 1201 1201 HOH HOH . 
HA 5 HOH A 102 1202 1202 HOH HOH . 
HA 5 HOH A 103 1203 1203 HOH HOH . 
HA 5 HOH A 104 1204 1204 HOH HOH . 
HA 5 HOH A 105 1205 1205 HOH HOH . 
HA 5 HOH A 106 1206 1206 HOH HOH . 
HA 5 HOH A 107 1207 1207 HOH HOH . 
HA 5 HOH A 108 1208 1208 HOH HOH . 
HA 5 HOH A 109 1209 1209 HOH HOH . 
HA 5 HOH A 110 1210 1210 HOH HOH . 
HA 5 HOH A 111 1211 1211 HOH HOH . 
HA 5 HOH A 112 1212 1212 HOH HOH . 
HA 5 HOH A 113 1213 1213 HOH HOH . 
HA 5 HOH A 114 1214 1214 HOH HOH . 
HA 5 HOH A 115 1215 1215 HOH HOH . 
HA 5 HOH A 116 1216 1216 HOH HOH . 
HA 5 HOH A 117 1217 1217 HOH HOH . 
HA 5 HOH A 118 1218 1218 HOH HOH . 
HA 5 HOH A 119 1219 1219 HOH HOH . 
HA 5 HOH A 120 1220 1220 HOH HOH . 
HA 5 HOH A 121 1221 1221 HOH HOH . 
HA 5 HOH A 122 1222 1222 HOH HOH . 
HA 5 HOH A 123 1223 1223 HOH HOH . 
HA 5 HOH A 124 1224 1224 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               41.529 
_atom_site.Cartn_y               61.082 
_atom_site.Cartn_z               109.308 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.72 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           1 
#