data_5XAL # _model_server_result.job_id JWbcxNdj1Uz6UPnOD8QEcA _model_server_result.datetime_utc '2024-11-15 10:47:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":207}' # _entry.id 5XAL # _exptl.entry_id 5XAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XAL _cell.length_a 46.879 _cell.length_b 47.56 _cell.length_c 151.509 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 7 A THR 7 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc2 A OE2 GLU 9 A GLU 9 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc3 A OH TYR 62 A TYR 62 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc4 A OG SER 66 A SER 66 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc5 A OD2 ASP 94 A ASP 94 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc6 D MG MG . A MG 202 1_555 M O HOH . A HOH 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc7 M O HOH . A HOH 315 1_565 F MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc8 M O HOH . A HOH 325 3_554 F MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc9 B OG1 THR 7 B THR 7 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc10 B OE2 GLU 9 B GLU 9 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc11 B OE1 GLU 39 B GLU 39 1_555 J MG MG . B MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc12 B OH TYR 62 B TYR 62 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc13 B OG SER 66 B SER 66 1_555 G MG MG . B MG 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc14 B O TYR 92 B TYR 92 1_555 J MG MG . B MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc15 B OD2 ASP 94 B ASP 94 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc16 B O PRO 109 B PRO 109 1_555 F MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc17 B OD1 ASP 131 B ASP 131 1_555 I MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc18 B O ARG 159 B ARG 159 1_555 I MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc19 B O LEU 165 B LEU 165 1_555 K MG MG . B MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc20 B OE2 GLU 169 B GLU 169 1_555 K MG MG . B MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc21 I MG MG . B MG 204 1_555 N O HOH . B HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc22 K MG MG . B MG 206 1_555 N O HOH . B HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc23 K MG MG . B MG 206 1_555 N O HOH . B HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 54 n n C O2 FMT sing 55 n n C H FMT sing 56 n n O2 HO2 FMT sing 57 n n # _atom_sites.entry_id 5XAL _atom_sites.fract_transf_matrix[1][1] 0.021331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 1 MG MG . D 2 MG A 1 202 7 MG MG . E 3 FMT A 1 203 2 FMT FMT . F 2 MG B 1 201 2 MG MG . G 2 MG B 1 202 3 MG MG . H 2 MG B 1 203 5 MG MG . I 2 MG B 1 204 6 MG MG . J 2 MG B 1 205 8 MG MG . K 2 MG B 1 206 9 MG MG . L 3 FMT B 1 207 1 FMT FMT . M 4 HOH A 1 301 43 HOH HOH . M 4 HOH A 2 302 40 HOH HOH . M 4 HOH A 3 303 98 HOH HOH . M 4 HOH A 4 304 53 HOH HOH . M 4 HOH A 5 305 126 HOH HOH . M 4 HOH A 6 306 135 HOH HOH . M 4 HOH A 7 307 78 HOH HOH . M 4 HOH A 8 308 32 HOH HOH . M 4 HOH A 9 309 8 HOH HOH . M 4 HOH A 10 310 127 HOH HOH . M 4 HOH A 11 311 13 HOH HOH . M 4 HOH A 12 312 79 HOH HOH . M 4 HOH A 13 313 103 HOH HOH . M 4 HOH A 14 314 39 HOH HOH . M 4 HOH A 15 315 56 HOH HOH . M 4 HOH A 16 316 6 HOH HOH . M 4 HOH A 17 317 76 HOH HOH . M 4 HOH A 18 318 169 HOH HOH . M 4 HOH A 19 319 133 HOH HOH . M 4 HOH A 20 320 73 HOH HOH . M 4 HOH A 21 321 94 HOH HOH . M 4 HOH A 22 322 128 HOH HOH . M 4 HOH A 23 323 175 HOH HOH . M 4 HOH A 24 324 164 HOH HOH . M 4 HOH A 25 325 16 HOH HOH . M 4 HOH A 26 326 49 HOH HOH . M 4 HOH A 27 327 82 HOH HOH . M 4 HOH A 28 328 3 HOH HOH . M 4 HOH A 29 329 29 HOH HOH . M 4 HOH A 30 330 59 HOH HOH . M 4 HOH A 31 331 45 HOH HOH . M 4 HOH A 32 332 74 HOH HOH . M 4 HOH A 33 333 2 HOH HOH . M 4 HOH A 34 334 83 HOH HOH . M 4 HOH A 35 335 80 HOH HOH . M 4 HOH A 36 336 160 HOH HOH . M 4 HOH A 37 337 90 HOH HOH . M 4 HOH A 38 338 22 HOH HOH . M 4 HOH A 39 339 155 HOH HOH . M 4 HOH A 40 340 33 HOH HOH . M 4 HOH A 41 341 89 HOH HOH . M 4 HOH A 42 342 84 HOH HOH . M 4 HOH A 43 343 31 HOH HOH . M 4 HOH A 44 344 34 HOH HOH . M 4 HOH A 45 345 100 HOH HOH . M 4 HOH A 46 346 163 HOH HOH . M 4 HOH A 47 347 162 HOH HOH . M 4 HOH A 48 348 81 HOH HOH . M 4 HOH A 49 349 48 HOH HOH . M 4 HOH A 50 350 35 HOH HOH . M 4 HOH A 51 351 5 HOH HOH . M 4 HOH A 52 352 91 HOH HOH . M 4 HOH A 53 353 21 HOH HOH . M 4 HOH A 54 354 132 HOH HOH . M 4 HOH A 55 355 77 HOH HOH . M 4 HOH A 56 356 23 HOH HOH . M 4 HOH A 57 357 28 HOH HOH . M 4 HOH A 58 358 158 HOH HOH . M 4 HOH A 59 359 17 HOH HOH . M 4 HOH A 60 360 9 HOH HOH . M 4 HOH A 61 361 25 HOH HOH . M 4 HOH A 62 362 44 HOH HOH . M 4 HOH A 63 363 58 HOH HOH . M 4 HOH A 64 364 11 HOH HOH . M 4 HOH A 65 365 85 HOH HOH . M 4 HOH A 66 366 129 HOH HOH . M 4 HOH A 67 367 12 HOH HOH . M 4 HOH A 68 368 96 HOH HOH . M 4 HOH A 69 369 47 HOH HOH . M 4 HOH A 70 370 20 HOH HOH . M 4 HOH A 71 371 75 HOH HOH . M 4 HOH A 72 372 86 HOH HOH . M 4 HOH A 73 373 7 HOH HOH . M 4 HOH A 74 374 139 HOH HOH . M 4 HOH A 75 375 52 HOH HOH . M 4 HOH A 76 376 70 HOH HOH . M 4 HOH A 77 377 69 HOH HOH . M 4 HOH A 78 378 87 HOH HOH . M 4 HOH A 79 379 72 HOH HOH . M 4 HOH A 80 380 136 HOH HOH . M 4 HOH A 81 381 71 HOH HOH . M 4 HOH A 82 382 172 HOH HOH . M 4 HOH A 83 383 138 HOH HOH . M 4 HOH A 84 384 156 HOH HOH . M 4 HOH A 85 385 131 HOH HOH . M 4 HOH A 86 386 4 HOH HOH . M 4 HOH A 87 387 157 HOH HOH . M 4 HOH A 88 388 46 HOH HOH . M 4 HOH A 89 389 159 HOH HOH . M 4 HOH A 90 390 93 HOH HOH . M 4 HOH A 91 391 97 HOH HOH . M 4 HOH A 92 392 92 HOH HOH . M 4 HOH A 93 393 88 HOH HOH . M 4 HOH A 94 394 50 HOH HOH . M 4 HOH A 95 395 102 HOH HOH . M 4 HOH A 96 396 42 HOH HOH . M 4 HOH A 97 397 95 HOH HOH . M 4 HOH A 98 398 161 HOH HOH . M 4 HOH A 99 399 99 HOH HOH . M 4 HOH A 100 400 111 HOH HOH . M 4 HOH A 101 401 57 HOH HOH . M 4 HOH A 102 402 137 HOH HOH . M 4 HOH A 103 403 38 HOH HOH . N 4 HOH B 1 301 165 HOH HOH . N 4 HOH B 2 302 143 HOH HOH . N 4 HOH B 3 303 10 HOH HOH . N 4 HOH B 4 304 27 HOH HOH . N 4 HOH B 5 305 123 HOH HOH . N 4 HOH B 6 306 146 HOH HOH . N 4 HOH B 7 307 134 HOH HOH . N 4 HOH B 8 308 26 HOH HOH . N 4 HOH B 9 309 51 HOH HOH . N 4 HOH B 10 310 124 HOH HOH . N 4 HOH B 11 311 115 HOH HOH . N 4 HOH B 12 312 18 HOH HOH . N 4 HOH B 13 313 19 HOH HOH . N 4 HOH B 14 314 119 HOH HOH . N 4 HOH B 15 315 64 HOH HOH . N 4 HOH B 16 316 61 HOH HOH . N 4 HOH B 17 317 140 HOH HOH . N 4 HOH B 18 318 15 HOH HOH . N 4 HOH B 19 319 65 HOH HOH . N 4 HOH B 20 320 148 HOH HOH . N 4 HOH B 21 321 173 HOH HOH . N 4 HOH B 22 322 125 HOH HOH . N 4 HOH B 23 323 68 HOH HOH . N 4 HOH B 24 324 110 HOH HOH . N 4 HOH B 25 325 121 HOH HOH . N 4 HOH B 26 326 142 HOH HOH . N 4 HOH B 27 327 62 HOH HOH . N 4 HOH B 28 328 66 HOH HOH . N 4 HOH B 29 329 166 HOH HOH . N 4 HOH B 30 330 120 HOH HOH . N 4 HOH B 31 331 63 HOH HOH . N 4 HOH B 32 332 36 HOH HOH . N 4 HOH B 33 333 109 HOH HOH . N 4 HOH B 34 334 114 HOH HOH . N 4 HOH B 35 335 108 HOH HOH . N 4 HOH B 36 336 54 HOH HOH . N 4 HOH B 37 337 144 HOH HOH . N 4 HOH B 38 338 149 HOH HOH . N 4 HOH B 39 339 154 HOH HOH . N 4 HOH B 40 340 37 HOH HOH . N 4 HOH B 41 341 117 HOH HOH . N 4 HOH B 42 342 67 HOH HOH . N 4 HOH B 43 343 152 HOH HOH . N 4 HOH B 44 344 141 HOH HOH . N 4 HOH B 45 345 1 HOH HOH . N 4 HOH B 46 346 107 HOH HOH . N 4 HOH B 47 347 153 HOH HOH . N 4 HOH B 48 348 14 HOH HOH . N 4 HOH B 49 349 174 HOH HOH . N 4 HOH B 50 350 122 HOH HOH . N 4 HOH B 51 351 151 HOH HOH . N 4 HOH B 52 352 104 HOH HOH . N 4 HOH B 53 353 105 HOH HOH . N 4 HOH B 54 354 24 HOH HOH . N 4 HOH B 55 355 41 HOH HOH . N 4 HOH B 56 356 60 HOH HOH . N 4 HOH B 57 357 147 HOH HOH . N 4 HOH B 58 358 170 HOH HOH . N 4 HOH B 59 359 112 HOH HOH . N 4 HOH B 60 360 171 HOH HOH . N 4 HOH B 61 361 167 HOH HOH . N 4 HOH B 62 362 116 HOH HOH . N 4 HOH B 63 363 168 HOH HOH . N 4 HOH B 64 364 113 HOH HOH . N 4 HOH B 65 365 118 HOH HOH . N 4 HOH B 66 366 145 HOH HOH . N 4 HOH B 67 367 150 HOH HOH . N 4 HOH B 68 368 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . L 3 -11.358 20.624 -0.388 1 31.94 ? C FMT 207 B 1 HETATM 2 O O1 FMT . . . L 3 -10.241 20.12 -0.518 1 35.02 ? O1 FMT 207 B 1 HETATM 3 O O2 FMT . . . L 3 -11.601 21.796 -0.922 1 20.36 ? O2 FMT 207 B 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 59 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 3 #