data_5XAN # _model_server_result.job_id JqD7Ey3LDwFBVMd5OHZaeQ _model_server_result.datetime_utc '2024-12-03 01:48:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xan # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":803}' # _entry.id 5XAN # _exptl.entry_id 5XAN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XAN _cell.length_a 63.545 _cell.length_b 73.814 _cell.length_c 369.746 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,P 1 1 B,G,H,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 117 A CYS 143 1_555 A SG CYS 242 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 117 B CYS 143 1_555 B SG CYS 242 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 480 n n C10 C9 OLC doub 481 n n C10 C11 OLC sing 482 n n C9 C8 OLC sing 483 n n C17 C16 OLC sing 484 z n C11 C12 OLC sing 485 n n C8 C7 OLC sing 486 n n C24 C22 OLC sing 487 n n C24 O25 OLC sing 488 n n C16 C15 OLC sing 489 n n C12 C13 OLC sing 490 n n C7 C6 OLC sing 491 n n C15 C14 OLC sing 492 n n C13 C14 OLC sing 493 n n C6 C5 OLC sing 494 n n C5 C4 OLC sing 495 n n C4 C3 OLC sing 496 n n C3 C2 OLC sing 497 n n C2 C1 OLC sing 498 n n C21 C22 OLC sing 499 n n C21 O20 OLC sing 500 n n C1 O19 OLC doub 501 n n C1 O20 OLC sing 502 n n C22 O23 OLC sing 503 n n C18 H18 OLC sing 504 n n C18 H18A OLC sing 505 n n C18 H18B OLC sing 506 n n C10 H10 OLC sing 507 n n C9 H9 OLC sing 508 n n C17 H17 OLC sing 509 n n C17 H17A OLC sing 510 n n C11 H11 OLC sing 511 n n C11 H11A OLC sing 512 n n C8 H8 OLC sing 513 n n C8 H8A OLC sing 514 n n C24 H24 OLC sing 515 n n C24 H24A OLC sing 516 n n C16 H16 OLC sing 517 n n C16 H16A OLC sing 518 n n C12 H12 OLC sing 519 n n C12 H12A OLC sing 520 n n C7 H7 OLC sing 521 n n C7 H7A OLC sing 522 n n C15 H15 OLC sing 523 n n C15 H15A OLC sing 524 n n C13 H13 OLC sing 525 n n C13 H13A OLC sing 526 n n C6 H6 OLC sing 527 n n C6 H6A OLC sing 528 n n C14 H14 OLC sing 529 n n C14 H14A OLC sing 530 n n C5 H5 OLC sing 531 n n C5 H5A OLC sing 532 n n C4 H4 OLC sing 533 n n C4 H4A OLC sing 534 n n C3 H3 OLC sing 535 n n C3 H3A OLC sing 536 n n C2 H2 OLC sing 537 n n C2 H2A OLC sing 538 n n C21 H21 OLC sing 539 n n C21 H21A OLC sing 540 n n C22 H22 OLC sing 541 n n O25 HO25 OLC sing 542 n n O23 HO23 OLC sing 543 n n # _atom_sites.entry_id 5XAN _atom_sites.fract_transf_matrix[1][1] 0.015737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 801 3 OLC OLC . D 2 OLC A 1 802 8 OLC OLC . E 2 OLC A 1 803 9 OLC OLC . F 2 OLC A 1 804 10 OLC OLC . G 2 OLC B 1 801 1 OLC OLC . H 2 OLC B 1 802 2 OLC OLC . I 2 OLC B 1 803 4 OLC OLC . J 2 OLC B 1 804 5 OLC OLC . K 2 OLC B 1 805 6 OLC OLC . L 3 15P B 1 806 1 15P 15P . M 3 15P B 1 807 2 15P 15P . N 3 15P B 1 808 3 15P 15P . O 3 15P B 1 809 4 15P 15P . P 4 HOH A 1 901 50 HOH HOH . P 4 HOH A 2 902 20 HOH HOH . P 4 HOH A 3 903 75 HOH HOH . P 4 HOH A 4 904 52 HOH HOH . P 4 HOH A 5 905 1 HOH HOH . P 4 HOH A 6 906 15 HOH HOH . P 4 HOH A 7 907 24 HOH HOH . P 4 HOH A 8 908 25 HOH HOH . P 4 HOH A 9 909 16 HOH HOH . P 4 HOH A 10 910 11 HOH HOH . P 4 HOH A 11 911 10 HOH HOH . P 4 HOH A 12 912 7 HOH HOH . P 4 HOH A 13 913 73 HOH HOH . P 4 HOH A 14 914 2 HOH HOH . P 4 HOH A 15 915 37 HOH HOH . P 4 HOH A 16 916 8 HOH HOH . P 4 HOH A 17 917 46 HOH HOH . P 4 HOH A 18 918 53 HOH HOH . P 4 HOH A 19 919 31 HOH HOH . P 4 HOH A 20 920 43 HOH HOH . P 4 HOH A 21 921 69 HOH HOH . P 4 HOH A 22 922 104 HOH HOH . P 4 HOH A 23 923 106 HOH HOH . P 4 HOH A 24 924 13 HOH HOH . P 4 HOH A 25 925 105 HOH HOH . P 4 HOH A 26 926 63 HOH HOH . P 4 HOH A 27 927 9 HOH HOH . P 4 HOH A 28 928 33 HOH HOH . P 4 HOH A 29 929 76 HOH HOH . P 4 HOH A 30 930 12 HOH HOH . P 4 HOH A 31 931 22 HOH HOH . P 4 HOH A 32 932 23 HOH HOH . P 4 HOH A 33 933 30 HOH HOH . P 4 HOH A 34 934 29 HOH HOH . P 4 HOH A 35 935 40 HOH HOH . P 4 HOH A 36 936 42 HOH HOH . P 4 HOH A 37 937 54 HOH HOH . P 4 HOH A 38 938 41 HOH HOH . P 4 HOH A 39 939 27 HOH HOH . P 4 HOH A 40 940 71 HOH HOH . P 4 HOH A 41 941 32 HOH HOH . P 4 HOH A 42 942 18 HOH HOH . P 4 HOH A 43 943 128 HOH HOH . P 4 HOH A 44 944 126 HOH HOH . P 4 HOH A 45 945 21 HOH HOH . P 4 HOH A 46 946 44 HOH HOH . P 4 HOH A 47 947 131 HOH HOH . P 4 HOH A 48 948 123 HOH HOH . P 4 HOH A 49 949 49 HOH HOH . P 4 HOH A 50 950 116 HOH HOH . P 4 HOH A 51 951 48 HOH HOH . P 4 HOH A 52 952 74 HOH HOH . P 4 HOH A 53 953 38 HOH HOH . P 4 HOH A 54 954 39 HOH HOH . Q 4 HOH B 1 901 62 HOH HOH . Q 4 HOH B 2 902 89 HOH HOH . Q 4 HOH B 3 903 59 HOH HOH . Q 4 HOH B 4 904 91 HOH HOH . Q 4 HOH B 5 905 58 HOH HOH . Q 4 HOH B 6 906 19 HOH HOH . Q 4 HOH B 7 907 85 HOH HOH . Q 4 HOH B 8 908 110 HOH HOH . Q 4 HOH B 9 909 90 HOH HOH . Q 4 HOH B 10 910 47 HOH HOH . Q 4 HOH B 11 911 45 HOH HOH . Q 4 HOH B 12 912 121 HOH HOH . Q 4 HOH B 13 913 60 HOH HOH . Q 4 HOH B 14 914 94 HOH HOH . Q 4 HOH B 15 915 95 HOH HOH . Q 4 HOH B 16 916 77 HOH HOH . Q 4 HOH B 17 917 88 HOH HOH . Q 4 HOH B 18 918 96 HOH HOH . Q 4 HOH B 19 919 103 HOH HOH . Q 4 HOH B 20 920 67 HOH HOH . Q 4 HOH B 21 921 84 HOH HOH . Q 4 HOH B 22 922 55 HOH HOH . Q 4 HOH B 23 923 114 HOH HOH . Q 4 HOH B 24 924 56 HOH HOH . Q 4 HOH B 25 925 78 HOH HOH . Q 4 HOH B 26 926 83 HOH HOH . Q 4 HOH B 27 927 66 HOH HOH . Q 4 HOH B 28 928 68 HOH HOH . Q 4 HOH B 29 929 5 HOH HOH . Q 4 HOH B 30 930 28 HOH HOH . Q 4 HOH B 31 931 36 HOH HOH . Q 4 HOH B 32 932 64 HOH HOH . Q 4 HOH B 33 933 101 HOH HOH . Q 4 HOH B 34 934 130 HOH HOH . Q 4 HOH B 35 935 98 HOH HOH . Q 4 HOH B 36 936 3 HOH HOH . Q 4 HOH B 37 937 82 HOH HOH . Q 4 HOH B 38 938 61 HOH HOH . Q 4 HOH B 39 939 92 HOH HOH . Q 4 HOH B 40 940 72 HOH HOH . Q 4 HOH B 41 941 17 HOH HOH . Q 4 HOH B 42 942 81 HOH HOH . Q 4 HOH B 43 943 4 HOH HOH . Q 4 HOH B 44 944 97 HOH HOH . Q 4 HOH B 45 945 79 HOH HOH . Q 4 HOH B 46 946 34 HOH HOH . Q 4 HOH B 47 947 87 HOH HOH . Q 4 HOH B 48 948 14 HOH HOH . Q 4 HOH B 49 949 100 HOH HOH . Q 4 HOH B 50 950 80 HOH HOH . Q 4 HOH B 51 951 86 HOH HOH . Q 4 HOH B 52 952 119 HOH HOH . Q 4 HOH B 53 953 102 HOH HOH . Q 4 HOH B 54 954 93 HOH HOH . Q 4 HOH B 55 955 26 HOH HOH . Q 4 HOH B 56 956 6 HOH HOH . Q 4 HOH B 57 957 35 HOH HOH . Q 4 HOH B 58 958 70 HOH HOH . Q 4 HOH B 59 959 117 HOH HOH . Q 4 HOH B 60 960 111 HOH HOH . Q 4 HOH B 61 961 129 HOH HOH . Q 4 HOH B 62 962 65 HOH HOH . Q 4 HOH B 63 963 120 HOH HOH . Q 4 HOH B 64 964 127 HOH HOH . Q 4 HOH B 65 965 124 HOH HOH . Q 4 HOH B 66 966 99 HOH HOH . Q 4 HOH B 67 967 118 HOH HOH . Q 4 HOH B 68 968 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . I 2 -53.466 25.489 -36.043 1 36.84 ? C18 OLC 803 B 1 HETATM 2 C C10 OLC . . . I 2 -49.841 26.597 -44.684 1 39.61 ? C10 OLC 803 B 1 HETATM 3 C C9 OLC . . . I 2 -49.572 25.855 -45.767 1 39.87 ? C9 OLC 803 B 1 HETATM 4 C C17 OLC . . . I 2 -52.971 24.491 -37.068 1 37.04 ? C17 OLC 803 B 1 HETATM 5 C C11 OLC . . . I 2 -50.708 26.054 -43.557 1 39.25 ? C11 OLC 803 B 1 HETATM 6 C C8 OLC . . . I 2 -50.117 24.447 -45.856 1 40.3 ? C8 OLC 803 B 1 HETATM 7 C C16 OLC . . . I 2 -52.639 25.211 -38.359 1 37.43 ? C16 OLC 803 B 1 HETATM 8 C C12 OLC . . . I 2 -49.887 25.299 -42.515 1 38.82 ? C12 OLC 803 B 1 HETATM 9 C C7 OLC . . . I 2 -49.746 23.827 -47.19 1 40.91 ? C7 OLC 803 B 1 HETATM 10 C C15 OLC . . . I 2 -51.789 24.38 -39.312 1 37.7 ? C15 OLC 803 B 1 HETATM 11 C C13 OLC . . . I 2 -50.781 24.441 -41.617 1 38.39 ? C13 OLC 803 B 1 HETATM 12 C C6 OLC . . . I 2 -49.797 22.302 -47.157 1 41.31 ? C6 OLC 803 B 1 HETATM 13 C C14 OLC . . . I 2 -51.375 25.267 -40.481 1 37.95 ? C14 OLC 803 B 1 HETATM 14 C C5 OLC . . . I 2 -49.382 21.758 -48.526 1 41.61 ? C5 OLC 803 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #