data_5XAP # _model_server_result.job_id 44JWrNlIKC6nBFeBD_p3HQ _model_server_result.datetime_utc '2025-09-04 08:03:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 5XAP # _exptl.entry_id 5XAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.86 _cell.angle_gamma 90 _cell.entry_id 5XAP _cell.length_a 208.265 _cell.length_b 69.807 _cell.length_c 66.169 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 117 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 143 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 242 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 268 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.051 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 5XAP _atom_sites.fract_transf_matrix[1][1] 0.004802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 801 1 OLC OLC . C 2 OLC A 1 802 3 OLC OLC . D 2 OLC A 1 803 4 OLC OLC . E 2 OLC A 1 804 5 OLC OLC . F 2 OLC A 1 805 6 OLC OLC . G 2 OLC A 1 806 7 OLC OLC . H 2 OLC A 1 807 8 OLC OLC . I 3 PEG A 1 808 1 PEG PEG . J 4 HOH A 1 901 52 HOH HOH . J 4 HOH A 2 902 2 HOH HOH . J 4 HOH A 3 903 47 HOH HOH . J 4 HOH A 4 904 5 HOH HOH . J 4 HOH A 5 905 1 HOH HOH . J 4 HOH A 6 906 41 HOH HOH . J 4 HOH A 7 907 22 HOH HOH . J 4 HOH A 8 908 17 HOH HOH . J 4 HOH A 9 909 16 HOH HOH . J 4 HOH A 10 910 19 HOH HOH . J 4 HOH A 11 911 29 HOH HOH . J 4 HOH A 12 912 27 HOH HOH . J 4 HOH A 13 913 3 HOH HOH . J 4 HOH A 14 914 48 HOH HOH . J 4 HOH A 15 915 44 HOH HOH . J 4 HOH A 16 916 32 HOH HOH . J 4 HOH A 17 917 25 HOH HOH . J 4 HOH A 18 918 18 HOH HOH . J 4 HOH A 19 919 28 HOH HOH . J 4 HOH A 20 920 9 HOH HOH . J 4 HOH A 21 921 13 HOH HOH . J 4 HOH A 22 922 26 HOH HOH . J 4 HOH A 23 923 24 HOH HOH . J 4 HOH A 24 924 8 HOH HOH . J 4 HOH A 25 925 7 HOH HOH . J 4 HOH A 26 926 14 HOH HOH . J 4 HOH A 27 927 36 HOH HOH . J 4 HOH A 28 928 10 HOH HOH . J 4 HOH A 29 929 45 HOH HOH . J 4 HOH A 30 930 42 HOH HOH . J 4 HOH A 31 931 4 HOH HOH . J 4 HOH A 32 932 30 HOH HOH . J 4 HOH A 33 933 15 HOH HOH . J 4 HOH A 34 934 46 HOH HOH . J 4 HOH A 35 935 49 HOH HOH . J 4 HOH A 36 936 21 HOH HOH . J 4 HOH A 37 937 37 HOH HOH . J 4 HOH A 38 938 12 HOH HOH . J 4 HOH A 39 939 35 HOH HOH . J 4 HOH A 40 940 23 HOH HOH . J 4 HOH A 41 941 6 HOH HOH . J 4 HOH A 42 942 39 HOH HOH . J 4 HOH A 43 943 11 HOH HOH . J 4 HOH A 44 944 38 HOH HOH . J 4 HOH A 45 945 31 HOH HOH . J 4 HOH A 46 946 33 HOH HOH . J 4 HOH A 47 947 43 HOH HOH . J 4 HOH A 48 948 34 HOH HOH . J 4 HOH A 49 949 40 HOH HOH . J 4 HOH A 50 950 20 HOH HOH . J 4 HOH A 51 951 51 HOH HOH . J 4 HOH A 52 952 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . D 2 -58.094 4.59 20.019 1 52.96 ? C18 OLC 803 A 1 HETATM 2 C C10 OLC . . . D 2 -63.887 6.069 14.524 1 46.39 ? C10 OLC 803 A 1 HETATM 3 C C9 OLC . . . D 2 -64.936 6.389 15.279 1 48.33 ? C9 OLC 803 A 1 HETATM 4 C C17 OLC . . . D 2 -58.766 4.843 18.685 1 52.99 ? C17 OLC 803 A 1 HETATM 5 C C11 OLC . . . D 2 -62.516 5.947 15.142 1 46.62 ? C11 OLC 803 A 1 HETATM 6 C C8 OLC . . . D 2 -66.293 6.51 14.624 1 49.68 ? C8 OLC 803 A 1 HETATM 7 C C16 OLC . . . D 2 -58.595 3.647 17.748 1 53.68 ? C16 OLC 803 A 1 HETATM 8 C C12 OLC . . . D 2 -61.547 5.357 14.126 1 45.85 ? C12 OLC 803 A 1 HETATM 9 C C7 OLC . . . D 2 -67.402 6.721 15.645 1 48.53 ? C7 OLC 803 A 1 HETATM 10 C C15 OLC . . . D 2 -58.669 4.028 16.269 1 53.62 ? C15 OLC 803 A 1 HETATM 11 C C13 OLC . . . D 2 -60.119 5.398 14.67 1 48.94 ? C13 OLC 803 A 1 HETATM 12 C C6 OLC . . . D 2 -68.51 7.556 15.003 1 52.45 ? C6 OLC 803 A 1 HETATM 13 C C14 OLC . . . D 2 -60.045 4.618 15.982 1 53.22 ? C14 OLC 803 A 1 HETATM 14 C C5 OLC . . . D 2 -68.097 9.025 14.92 1 57.52 ? C5 OLC 803 A 1 HETATM 15 C C4 OLC . . . D 2 -68.911 9.79 13.89 1 59.42 ? C4 OLC 803 A 1 HETATM 16 C C3 OLC . . . D 2 -68.384 9.514 12.491 1 59.55 ? C3 OLC 803 A 1 HETATM 17 C C2 OLC . . . D 2 -69.473 9.701 11.434 1 64.57 ? C2 OLC 803 A 1 HETATM 18 C C1 OLC . . . D 2 -69.924 11.144 11.329 1 73.2 ? C1 OLC 803 A 1 HETATM 19 O O19 OLC . . . D 2 -71.103 11.417 11.52 1 73.99 ? O19 OLC 803 A 1 HETATM 20 O O20 OLC . . . D 2 -68.973 12.211 10.998 1 76.7 ? O20 OLC 803 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #