data_5XAR
#
_model_server_result.job_id            8tvXMT8vYW0RFS3vmljOng 
_model_server_result.datetime_utc      '2025-02-28 05:00:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xar 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":502}' 
#
_entry.id    5XAR 
#
_exptl.entry_id    5XAR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.5 
_cell.angle_gamma         90 
_cell.entry_id            5XAR 
_cell.length_a            90.367 
_cell.length_b            163.994 
_cell.length_c            93.67 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XAR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,K,L 1 1 
C,D,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ILE 171 A ILE 181 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc2 A O GLY 173 A GLY 183 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc3 A O MET 389 A MET 399 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 A O ALA 390 A ALA 400 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? 
metalc ? metalc5 A O ASN 391 A ASN 401 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc6 B O ILE 171 B ILE 181 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc7 B O GLY 173 B GLY 183 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc8 B O MET 389 B MET 399 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? 
metalc ? metalc9 B O ASN 391 B ASN 401 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc10 C O ILE 171 C ILE 181 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc11 C O GLY 173 C GLY 183 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc12 C O MET 389 C MET 399 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc13 C O ASN 391 C ASN 401 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc14 D O ILE 171 D ILE 181 1_555 J NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc15 D O GLY 173 D GLY 183 1_555 J NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc16 D O MET 389 D MET 399 1_555 J NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? 
metalc ? metalc17 D O ASN 391 D ASN 401 1_555 J NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     5XAR 
_atom_sites.fract_transf_matrix[1][1]    0.011066 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000678 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NA A 1 501 502 NA NA . 
F 3 BOG A 1 502 1448 BOG BOG . 
G 2 NA B 1 501 502 NA NA . 
H 3 BOG B 1 502 1450 BOG BOG . 
I 2 NA C 1 501 502 NA NA . 
J 2 NA D 1 501 502 NA NA . 
K 4 HOH A 1 601 2007 HOH HOH . 
K 4 HOH A 2 602 2008 HOH HOH . 
L 4 HOH B 1 601 2007 HOH HOH . 
L 4 HOH B 2 602 2008 HOH HOH . 
M 4 HOH C 1 601 2007 HOH HOH . 
M 4 HOH C 2 602 2008 HOH HOH . 
N 4 HOH D 1 601 2007 HOH HOH . 
N 4 HOH D 2 602 2008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . H 3 -36.568 15.747 -36.064 1 222.66 ? C1 BOG 502 B 1 
HETATM 2 O O1 BOG . . . H 3 -35.913 17.014 -35.911 1 187.27 ? O1 BOG 502 B 1 
HETATM 3 C C2 BOG . . . H 3 -35.691 14.821 -36.914 1 234.18 ? C2 BOG 502 B 1 
HETATM 4 O O2 BOG . . . H 3 -35.29 15.444 -38.136 1 215.26 ? O2 BOG 502 B 1 
HETATM 5 C C3 BOG . . . H 3 -36.475 13.528 -37.14 1 246.39 ? C3 BOG 502 B 1 
HETATM 6 O O3 BOG . . . H 3 -35.819 12.626 -38.041 1 232.8 ? O3 BOG 502 B 1 
HETATM 7 C C4 BOG . . . H 3 -36.706 12.892 -35.773 1 245.47 ? C4 BOG 502 B 1 
HETATM 8 O O4 BOG . . . H 3 -37.5 11.708 -35.92 1 254.61 ? O4 BOG 502 B 1 
HETATM 9 C C5 BOG . . . H 3 -37.412 13.893 -34.846 1 225.42 ? C5 BOG 502 B 1 
HETATM 10 O O5 BOG . . . H 3 -36.742 15.151 -34.765 1 213.87 ? O5 BOG 502 B 1 
HETATM 11 C C6 BOG . . . H 3 -37.527 13.345 -33.441 1 216.92 ? C6 BOG 502 B 1 
HETATM 12 O O6 BOG . . . H 3 -36.427 12.538 -33.076 1 250.34 ? O6 BOG 502 B 1 
HETATM 13 C C1' BOG . . . H 3 -36.753 17.945 -35.246 1 168.63 ? C1' BOG 502 B 1 
HETATM 14 C C2' BOG . . . H 3 -35.992 19.241 -35.065 1 161.09 ? C2' BOG 502 B 1 
HETATM 15 C C3' BOG . . . H 3 -36.989 20.371 -34.976 1 163.49 ? C3' BOG 502 B 1 
HETATM 16 C C4' BOG . . . H 3 -36.391 21.639 -34.393 1 171.08 ? C4' BOG 502 B 1 
HETATM 17 C C5' BOG . . . H 3 -37.166 22.921 -34.681 1 156.07 ? C5' BOG 502 B 1 
HETATM 18 C C6' BOG . . . H 3 -36.889 24.032 -33.684 1 144.09 ? C6' BOG 502 B 1 
HETATM 19 C C7' BOG . . . H 3 -37.494 25.34 -34.207 1 141.04 ? C7' BOG 502 B 1 
HETATM 20 C C8' BOG . . . H 3 -37.228 26.606 -33.377 1 142.57 ? C8' BOG 502 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           498 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#