data_5XAS # _model_server_result.job_id 1IpXC1E7efqyalzlSWiQTg _model_server_result.datetime_utc '2024-10-19 13:18:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 5XAS # _exptl.entry_id 5XAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 97.14 _cell.angle_beta 100.16 _cell.angle_gamma 94.59 _cell.entry_id 5XAS _cell.length_a 51.705 _cell.length_b 83.34 _cell.length_c 81.06 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 171 A ILE 181 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 A O GLY 173 A GLY 183 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 A O MET 389 A MET 399 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc4 A O ASN 391 A ASN 401 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 C NA NA . A NA 501 1_555 H O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc6 C NA NA . A NA 501 1_555 H O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc7 B O ILE 171 B ILE 181 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc8 B O GLY 173 B GLY 183 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc9 B O MET 389 B MET 399 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc10 B O ASN 391 B ASN 401 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc11 F NA NA . B NA 501 1_555 I O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc12 F NA NA . B NA 501 1_555 I O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5XAS _atom_sites.fract_transf_matrix[1][1] 0.01934 _atom_sites.fract_transf_matrix[1][2] 0.001553 _atom_sites.fract_transf_matrix[1][3] 0.003722 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012038 _atom_sites.fract_transf_matrix[2][3] 0.001716 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 501 502 NA NA . D 3 FLC A 1 502 1349 FLC FLC . E 4 BOG A 1 503 1350 BOG BOG . F 2 NA B 1 501 502 NA NA . G 3 FLC B 1 502 1349 FLC FLC . H 5 HOH A 1 601 2007 HOH HOH . H 5 HOH A 2 602 2006 HOH HOH . I 5 HOH B 1 601 2007 HOH HOH . I 5 HOH B 2 602 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . E 4 -21.901 -54.163 31.436 1 156.51 ? C1 BOG 503 A 1 HETATM 2 O O1 BOG . . . E 4 -22.834 -53.566 32.334 1 152.3 ? O1 BOG 503 A 1 HETATM 3 C C2 BOG . . . E 4 -22.649 -55.156 30.566 1 157.82 ? C2 BOG 503 A 1 HETATM 4 O O2 BOG . . . E 4 -23.132 -56.225 31.398 1 158.3 ? O2 BOG 503 A 1 HETATM 5 C C3 BOG . . . E 4 -21.747 -55.713 29.476 1 159.64 ? C3 BOG 503 A 1 HETATM 6 O O3 BOG . . . E 4 -22.552 -56.176 28.408 1 157.13 ? O3 BOG 503 A 1 HETATM 7 C C4 BOG . . . E 4 -20.834 -54.695 28.824 1 163.32 ? C4 BOG 503 A 1 HETATM 8 O O4 BOG . . . E 4 -19.77 -55.394 28.174 1 166.66 ? O4 BOG 503 A 1 HETATM 9 C C5 BOG . . . E 4 -20.234 -53.715 29.814 1 164.66 ? C5 BOG 503 A 1 HETATM 10 O O5 BOG . . . E 4 -21.266 -53.158 30.624 1 157.71 ? O5 BOG 503 A 1 HETATM 11 C C6 BOG . . . E 4 -19.454 -52.65 29.052 1 170.07 ? C6 BOG 503 A 1 HETATM 12 O O6 BOG . . . E 4 -20.242 -52.122 27.977 1 169.85 ? O6 BOG 503 A 1 HETATM 13 C C1' BOG . . . E 4 -22.337 -53.337 33.641 1 143.01 ? C1' BOG 503 A 1 HETATM 14 C C2' BOG . . . E 4 -21.419 -52.114 33.651 1 142.86 ? C2' BOG 503 A 1 HETATM 15 C C3' BOG . . . E 4 -22.147 -50.821 33.268 1 137.9 ? C3' BOG 503 A 1 HETATM 16 C C4' BOG . . . E 4 -22.344 -49.852 34.428 1 137 ? C4' BOG 503 A 1 HETATM 17 C C5' BOG . . . E 4 -21.545 -48.553 34.28 1 139.13 ? C5' BOG 503 A 1 HETATM 18 C C6' BOG . . . E 4 -21.871 -47.583 35.417 1 139.13 ? C6' BOG 503 A 1 HETATM 19 C C7' BOG . . . E 4 -21.405 -48.111 36.773 1 138.94 ? C7' BOG 503 A 1 HETATM 20 C C8' BOG . . . E 4 -21.138 -46.99 37.751 1 139.45 ? C8' BOG 503 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #