data_5XAT # _model_server_result.job_id vxj1OV4zrglyuduQLNFW_A _model_server_result.datetime_utc '2024-11-28 10:20:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 5XAT # _exptl.entry_id 5XAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.1 _cell.angle_beta 82.22 _cell.angle_gamma 69.66 _cell.entry_id 5XAT _cell.length_a 87.668 _cell.length_b 91.874 _cell.length_c 96.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,K,L,N 1 1 B,C,H,I,J,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D OD1 ASP 161 D ASP 171 1_555 D SD MET 435 D MET 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc1 A O ILE 171 A ILE 181 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 A O GLY 173 A GLY 183 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 A O MET 389 A MET 399 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc4 A O ASN 391 A ASN 401 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 E NA NA . A NA 501 1_555 L O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 B O ILE 171 B ILE 181 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc7 B O GLY 173 B GLY 183 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 B O MET 389 B MET 399 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc9 B O ASN 391 B ASN 401 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc10 I NA NA . B NA 502 1_555 M O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc11 D O ILE 171 D ILE 181 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc12 D O GLY 173 D GLY 183 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc13 D O MET 389 D MET 399 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc14 D O ASN 391 D ASN 401 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc15 K NA NA . D NA 501 1_555 N O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 131 n n CAC OA1 FLC doub 132 n n CAC OA2 FLC sing 133 n n CA CB FLC sing 134 n n CA HA1 FLC sing 135 n n CA HA2 FLC sing 136 n n CB CBC FLC sing 137 n n CB CG FLC sing 138 n n CB OHB FLC sing 139 n n CBC OB1 FLC doub 140 n n CBC OB2 FLC sing 141 n n CG CGC FLC sing 142 n n CG HG1 FLC sing 143 n n CG HG2 FLC sing 144 n n CGC OG1 FLC doub 145 n n CGC OG2 FLC sing 146 n n OHB HOB FLC sing 147 n n # _atom_sites.entry_id 5XAT _atom_sites.fract_transf_matrix[1][1] 0.011407 _atom_sites.fract_transf_matrix[1][2] -0.004229 _atom_sites.fract_transf_matrix[1][3] -0.001464 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011608 _atom_sites.fract_transf_matrix[2][3] -0.000263 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 501 502 NA NA . F 3 FLC A 1 502 1449 FLC FLC . G 4 BOG A 1 503 1450 BOG BOG . H 3 FLC B 1 501 1449 FLC FLC . I 2 NA B 1 502 502 NA NA . J 3 FLC C 1 501 1449 FLC FLC . K 2 NA D 1 501 502 NA NA . L 5 HOH A 1 601 2007 HOH HOH . L 5 HOH A 2 602 2004 HOH HOH . M 5 HOH B 1 601 2005 HOH HOH . N 5 HOH D 1 601 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . F 3 -36.886 -20.042 -36.503 1 193.38 ? CAC FLC 502 A 1 HETATM 2 C CA FLC . . . F 3 -36.989 -18.618 -36.089 1 190.27 ? CA FLC 502 A 1 HETATM 3 C CB FLC . . . F 3 -37.302 -18.298 -34.665 1 191.49 ? CB FLC 502 A 1 HETATM 4 C CBC FLC . . . F 3 -38.271 -19.052 -33.85 1 190.42 ? CBC FLC 502 A 1 HETATM 5 C CG FLC . . . F 3 -37.017 -16.894 -34.239 1 178.62 ? CG FLC 502 A 1 HETATM 6 C CGC FLC . . . F 3 -37.498 -16.56 -32.851 1 158.46 ? CGC FLC 502 A 1 HETATM 7 O OA1 FLC . . . F 3 -36.564 -20.22 -37.697 1 167.19 ? OA1 FLC 502 A 1 HETATM 8 O OA2 FLC . . . F 3 -37.085 -20.982 -35.697 1 213.16 ? OA2 FLC 502 A 1 HETATM 9 O OB1 FLC . . . F 3 -39.421 -18.839 -34.287 1 206.55 ? OB1 FLC 502 A 1 HETATM 10 O OB2 FLC . . . F 3 -38.008 -19.737 -32.839 1 141.2 ? OB2 FLC 502 A 1 HETATM 11 O OG1 FLC . . . F 3 -38.658 -16.119 -32.677 1 151.24 ? OG1 FLC 502 A 1 HETATM 12 O OG2 FLC . . . F 3 -36.689 -16.738 -31.935 1 147.48 ? OG2 FLC 502 A 1 HETATM 13 O OHB FLC . . . F 3 -36.063 -18.911 -34.124 1 200.51 ? OHB FLC 502 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 423 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #