data_5XAT # _model_server_result.job_id bfoG7XSQUt2jY-QZQzLzWQ _model_server_result.datetime_utc '2024-11-24 18:01:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 5XAT # _exptl.entry_id 5XAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.1 _cell.angle_beta 82.22 _cell.angle_gamma 69.66 _cell.entry_id 5XAT _cell.length_a 87.668 _cell.length_b 91.874 _cell.length_c 96.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,K,L,N 1 1 B,C,H,I,J,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D OD1 ASP 161 D ASP 171 1_555 D SD MET 435 D MET 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc1 A O ILE 171 A ILE 181 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 A O GLY 173 A GLY 183 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 A O MET 389 A MET 399 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc4 A O ASN 391 A ASN 401 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 E NA NA . A NA 501 1_555 L O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 B O ILE 171 B ILE 181 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc7 B O GLY 173 B GLY 183 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 B O MET 389 B MET 399 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc9 B O ASN 391 B ASN 401 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc10 I NA NA . B NA 502 1_555 M O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc11 D O ILE 171 D ILE 181 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc12 D O GLY 173 D GLY 183 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc13 D O MET 389 D MET 399 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc14 D O ASN 391 D ASN 401 1_555 K NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc15 K NA NA . D NA 501 1_555 N O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XAT _atom_sites.fract_transf_matrix[1][1] 0.011407 _atom_sites.fract_transf_matrix[1][2] -0.004229 _atom_sites.fract_transf_matrix[1][3] -0.001464 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011608 _atom_sites.fract_transf_matrix[2][3] -0.000263 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 501 502 NA NA . F 3 FLC A 1 502 1449 FLC FLC . G 4 BOG A 1 503 1450 BOG BOG . H 3 FLC B 1 501 1449 FLC FLC . I 2 NA B 1 502 502 NA NA . J 3 FLC C 1 501 1449 FLC FLC . K 2 NA D 1 501 502 NA NA . L 5 HOH A 1 601 2007 HOH HOH . L 5 HOH A 2 602 2004 HOH HOH . M 5 HOH B 1 601 2005 HOH HOH . N 5 HOH D 1 601 2007 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x -6.384 _atom_site.Cartn_y -63.855 _atom_site.Cartn_z -36.693 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 271.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #