data_5XAW # _model_server_result.job_id deawy_qOCjCNrwpYwxTcSg _model_server_result.datetime_utc '2025-02-20 14:10:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xaw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":203}' # _entry.id 5XAW # _exptl.entry_id 5XAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XAW _cell.length_a 57.079 _cell.length_b 57.079 _cell.length_c 72.024 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 29 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 58 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 29 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 58 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.068 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5XAW _atom_sites.fract_transf_matrix[1][1] 0.01752 _atom_sites.fract_transf_matrix[1][2] 0.010115 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P33 A 1 201 2 P33 15P . D 3 PG4 A 1 202 4 PG4 PE4 . E 3 PG4 A 1 203 5 PG4 PE4 . F 4 GOL A 1 204 1 GOL GOL . G 2 P33 B 1 201 1 P33 15P . H 3 PG4 B 1 202 3 PG4 PE4 . I 4 GOL B 1 203 2 GOL GOL . J 5 HOH A 1 301 39 HOH HOH . J 5 HOH A 2 302 19 HOH HOH . J 5 HOH A 3 303 4 HOH HOH . J 5 HOH A 4 304 17 HOH HOH . J 5 HOH A 5 305 26 HOH HOH . J 5 HOH A 6 306 1 HOH HOH . J 5 HOH A 7 307 31 HOH HOH . J 5 HOH A 8 308 32 HOH HOH . J 5 HOH A 9 309 14 HOH HOH . J 5 HOH A 10 310 21 HOH HOH . J 5 HOH A 11 311 16 HOH HOH . J 5 HOH A 12 312 7 HOH HOH . J 5 HOH A 13 313 3 HOH HOH . J 5 HOH A 14 314 30 HOH HOH . J 5 HOH A 15 315 20 HOH HOH . J 5 HOH A 16 316 41 HOH HOH . J 5 HOH A 17 317 37 HOH HOH . J 5 HOH A 18 318 34 HOH HOH . K 5 HOH B 1 301 11 HOH HOH . K 5 HOH B 2 302 10 HOH HOH . K 5 HOH B 3 303 23 HOH HOH . K 5 HOH B 4 304 29 HOH HOH . K 5 HOH B 5 305 18 HOH HOH . K 5 HOH B 6 306 9 HOH HOH . K 5 HOH B 7 307 6 HOH HOH . K 5 HOH B 8 308 24 HOH HOH . K 5 HOH B 9 309 2 HOH HOH . K 5 HOH B 10 310 15 HOH HOH . K 5 HOH B 11 311 8 HOH HOH . K 5 HOH B 12 312 25 HOH HOH . K 5 HOH B 13 313 22 HOH HOH . K 5 HOH B 14 314 27 HOH HOH . K 5 HOH B 15 315 13 HOH HOH . K 5 HOH B 16 316 5 HOH HOH . K 5 HOH B 17 317 35 HOH HOH . K 5 HOH B 18 318 12 HOH HOH . K 5 HOH B 19 319 36 HOH HOH . K 5 HOH B 20 320 38 HOH HOH . K 5 HOH B 21 321 33 HOH HOH . K 5 HOH B 22 322 28 HOH HOH . K 5 HOH B 23 323 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 32.534 10.039 -9.714 1 47.52 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . I 4 32.157 8.79 -9.158 1 59.47 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . I 4 32.636 11.069 -8.588 1 55.29 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . I 4 32.79 10.464 -7.316 1 49.81 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . I 4 33.858 11.924 -8.838 1 57.05 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . I 4 33.894 12.948 -7.878 1 61.45 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #