data_5XBN # _model_server_result.job_id O5nq8irPtjGRYF6iAUA6cg _model_server_result.datetime_utc '2024-10-20 00:49:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5XBN # _exptl.entry_id 5XBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XBN _cell.length_a 75.195 _cell.length_b 75.195 _cell.length_c 43.739 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 58 A LEU 58 1_555 A N MSE 59 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 59 A MSE 59 1_555 A N LYS 60 A LYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLY 81 A GLY 81 1_555 A N MSE 82 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 82 A MSE 82 1_555 A N ASN 83 A ASN 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C ILE 90 A ILE 90 1_555 A N MSE 91 A MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 91 A MSE 91 1_555 A N LEU 92 A LEU 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C PRO 105 A PRO 105 1_555 A N MSE 106 A MSE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 106 A MSE 106 1_555 A N GLU 107 A GLU 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C ILE 109 A ILE 109 1_555 A N MSE 110 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C MSE 110 A MSE 110 1_555 A N GLY 111 A GLY 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C THR 112 A THR 112 1_555 A N MSE 113 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 113 A MSE 113 1_555 A N LEU 114 A LEU 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A NE2 HIS 115 A HIS 115 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc2 A NE2 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc3 A NE2 HIS 125 A HIS 125 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc4 B ZN ZN . A ZN 201 1_555 C O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XBN _atom_sites.fract_transf_matrix[1][1] 0.013299 _atom_sites.fract_transf_matrix[1][2] 0.007678 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 1 ZN ZN . C 3 HOH A 1 301 52 HOH HOH . C 3 HOH A 2 302 38 HOH HOH . C 3 HOH A 3 303 68 HOH HOH . C 3 HOH A 4 304 9 HOH HOH . C 3 HOH A 5 305 14 HOH HOH . C 3 HOH A 6 306 43 HOH HOH . C 3 HOH A 7 307 51 HOH HOH . C 3 HOH A 8 308 12 HOH HOH . C 3 HOH A 9 309 37 HOH HOH . C 3 HOH A 10 310 36 HOH HOH . C 3 HOH A 11 311 28 HOH HOH . C 3 HOH A 12 312 67 HOH HOH . C 3 HOH A 13 313 73 HOH HOH . C 3 HOH A 14 314 60 HOH HOH . C 3 HOH A 15 315 41 HOH HOH . C 3 HOH A 16 316 6 HOH HOH . C 3 HOH A 17 317 30 HOH HOH . C 3 HOH A 18 318 34 HOH HOH . C 3 HOH A 19 319 26 HOH HOH . C 3 HOH A 20 320 46 HOH HOH . C 3 HOH A 21 321 2 HOH HOH . C 3 HOH A 22 322 5 HOH HOH . C 3 HOH A 23 323 17 HOH HOH . C 3 HOH A 24 324 61 HOH HOH . C 3 HOH A 25 325 3 HOH HOH . C 3 HOH A 26 326 40 HOH HOH . C 3 HOH A 27 327 7 HOH HOH . C 3 HOH A 28 328 27 HOH HOH . C 3 HOH A 29 329 8 HOH HOH . C 3 HOH A 30 330 21 HOH HOH . C 3 HOH A 31 331 48 HOH HOH . C 3 HOH A 32 332 56 HOH HOH . C 3 HOH A 33 333 1 HOH HOH . C 3 HOH A 34 334 23 HOH HOH . C 3 HOH A 35 335 29 HOH HOH . C 3 HOH A 36 336 42 HOH HOH . C 3 HOH A 37 337 75 HOH HOH . C 3 HOH A 38 338 32 HOH HOH . C 3 HOH A 39 339 50 HOH HOH . C 3 HOH A 40 340 64 HOH HOH . C 3 HOH A 41 341 47 HOH HOH . C 3 HOH A 42 342 66 HOH HOH . C 3 HOH A 43 343 58 HOH HOH . C 3 HOH A 44 344 72 HOH HOH . C 3 HOH A 45 345 15 HOH HOH . C 3 HOH A 46 346 69 HOH HOH . C 3 HOH A 47 347 16 HOH HOH . C 3 HOH A 48 348 78 HOH HOH . C 3 HOH A 49 349 44 HOH HOH . C 3 HOH A 50 350 22 HOH HOH . C 3 HOH A 51 351 19 HOH HOH . C 3 HOH A 52 352 57 HOH HOH . C 3 HOH A 53 353 13 HOH HOH . C 3 HOH A 54 354 70 HOH HOH . C 3 HOH A 55 355 10 HOH HOH . C 3 HOH A 56 356 35 HOH HOH . C 3 HOH A 57 357 55 HOH HOH . C 3 HOH A 58 358 20 HOH HOH . C 3 HOH A 59 359 53 HOH HOH . C 3 HOH A 60 360 25 HOH HOH . C 3 HOH A 61 361 2 HOH HOH . C 3 HOH A 62 362 71 HOH HOH . C 3 HOH A 63 363 82 HOH HOH . C 3 HOH A 64 364 77 HOH HOH . C 3 HOH A 65 365 62 HOH HOH . C 3 HOH A 66 366 80 HOH HOH . C 3 HOH A 67 367 74 HOH HOH . C 3 HOH A 68 368 49 HOH HOH . C 3 HOH A 69 369 11 HOH HOH . C 3 HOH A 70 370 31 HOH HOH . C 3 HOH A 71 371 63 HOH HOH . C 3 HOH A 72 372 39 HOH HOH . C 3 HOH A 73 373 45 HOH HOH . C 3 HOH A 74 374 33 HOH HOH . C 3 HOH A 75 375 24 HOH HOH . C 3 HOH A 76 376 76 HOH HOH . C 3 HOH A 77 377 81 HOH HOH . C 3 HOH A 78 378 59 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 83 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.271 _atom_site.Cartn_y 17.998 _atom_site.Cartn_z 4.932 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #