data_5XBR
#
_model_server_result.job_id            1YBFlYwfOLRMjvvZpDPUHA 
_model_server_result.datetime_utc      '2024-11-05 01:19:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xbr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5XBR 
#
_exptl.entry_id    5XBR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5XBR 
_cell.length_a            140.466 
_cell.length_b            140.466 
_cell.length_c            48.023 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XBR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        168 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 
6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 205 A CYS 205 1_555 A SG CYS 211 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
disulf ? disulf2 B SG CYS 205 B CYS 205 1_555 B SG CYS 211 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
covale ? covale1 A C VAL 45 A VAL 45 1_555 A N OCS 46 A OCS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C OCS 46 A OCS 46 1_555 A N THR 47 A THR 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 B C VAL 45 B VAL 45 1_555 B N OCS 46 B OCS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale4 B C OCS 46 B OCS 46 1_555 B N THR 47 B THR 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     5XBR 
_atom_sites.fract_transf_matrix[1][1]    0.007119 
_atom_sites.fract_transf_matrix[1][2]    0.00411 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020823 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 301 1 GOL GOL . 
D 2 GOL B 1 301 2 GOL GOL . 
E 3 HOH A 1 401 63 HOH HOH . 
E 3 HOH A 2 402 122 HOH HOH . 
E 3 HOH A 3 403 27 HOH HOH . 
E 3 HOH A 4 404 101 HOH HOH . 
E 3 HOH A 5 405 105 HOH HOH . 
E 3 HOH A 6 406 38 HOH HOH . 
E 3 HOH A 7 407 99 HOH HOH . 
E 3 HOH A 8 408 60 HOH HOH . 
E 3 HOH A 9 409 44 HOH HOH . 
E 3 HOH A 10 410 18 HOH HOH . 
E 3 HOH A 11 411 121 HOH HOH . 
E 3 HOH A 12 412 69 HOH HOH . 
E 3 HOH A 13 413 49 HOH HOH . 
E 3 HOH A 14 414 94 HOH HOH . 
E 3 HOH A 15 415 128 HOH HOH . 
E 3 HOH A 16 416 47 HOH HOH . 
E 3 HOH A 17 417 12 HOH HOH . 
E 3 HOH A 18 418 98 HOH HOH . 
E 3 HOH A 19 419 2 HOH HOH . 
E 3 HOH A 20 420 20 HOH HOH . 
E 3 HOH A 21 421 7 HOH HOH . 
E 3 HOH A 22 422 30 HOH HOH . 
E 3 HOH A 23 423 9 HOH HOH . 
E 3 HOH A 24 424 89 HOH HOH . 
E 3 HOH A 25 425 97 HOH HOH . 
E 3 HOH A 26 426 113 HOH HOH . 
E 3 HOH A 27 427 10 HOH HOH . 
E 3 HOH A 28 428 37 HOH HOH . 
E 3 HOH A 29 429 55 HOH HOH . 
E 3 HOH A 30 430 22 HOH HOH . 
E 3 HOH A 31 431 111 HOH HOH . 
E 3 HOH A 32 432 6 HOH HOH . 
E 3 HOH A 33 433 35 HOH HOH . 
E 3 HOH A 34 434 42 HOH HOH . 
E 3 HOH A 35 435 102 HOH HOH . 
E 3 HOH A 36 436 14 HOH HOH . 
E 3 HOH A 37 437 25 HOH HOH . 
E 3 HOH A 38 438 117 HOH HOH . 
E 3 HOH A 39 439 125 HOH HOH . 
E 3 HOH A 40 440 39 HOH HOH . 
E 3 HOH A 41 441 53 HOH HOH . 
E 3 HOH A 42 442 116 HOH HOH . 
E 3 HOH A 43 443 24 HOH HOH . 
E 3 HOH A 44 444 32 HOH HOH . 
E 3 HOH A 45 445 84 HOH HOH . 
E 3 HOH A 46 446 103 HOH HOH . 
E 3 HOH A 47 447 124 HOH HOH . 
E 3 HOH A 48 448 33 HOH HOH . 
E 3 HOH A 49 449 65 HOH HOH . 
E 3 HOH A 50 450 93 HOH HOH . 
E 3 HOH A 51 451 5 HOH HOH . 
E 3 HOH A 52 452 76 HOH HOH . 
E 3 HOH A 53 453 52 HOH HOH . 
E 3 HOH A 54 454 96 HOH HOH . 
E 3 HOH A 55 455 95 HOH HOH . 
E 3 HOH A 56 456 104 HOH HOH . 
E 3 HOH A 57 457 114 HOH HOH . 
E 3 HOH A 58 458 123 HOH HOH . 
E 3 HOH A 59 459 92 HOH HOH . 
E 3 HOH A 60 460 74 HOH HOH . 
E 3 HOH A 61 461 119 HOH HOH . 
E 3 HOH A 62 462 120 HOH HOH . 
F 3 HOH B 1 401 59 HOH HOH . 
F 3 HOH B 2 402 109 HOH HOH . 
F 3 HOH B 3 403 77 HOH HOH . 
F 3 HOH B 4 404 45 HOH HOH . 
F 3 HOH B 5 405 11 HOH HOH . 
F 3 HOH B 6 406 3 HOH HOH . 
F 3 HOH B 7 407 1 HOH HOH . 
F 3 HOH B 8 408 75 HOH HOH . 
F 3 HOH B 9 409 41 HOH HOH . 
F 3 HOH B 10 410 17 HOH HOH . 
F 3 HOH B 11 411 13 HOH HOH . 
F 3 HOH B 12 412 68 HOH HOH . 
F 3 HOH B 13 413 8 HOH HOH . 
F 3 HOH B 14 414 90 HOH HOH . 
F 3 HOH B 15 415 127 HOH HOH . 
F 3 HOH B 16 416 87 HOH HOH . 
F 3 HOH B 17 417 112 HOH HOH . 
F 3 HOH B 18 418 31 HOH HOH . 
F 3 HOH B 19 419 21 HOH HOH . 
F 3 HOH B 20 420 34 HOH HOH . 
F 3 HOH B 21 421 28 HOH HOH . 
F 3 HOH B 22 422 23 HOH HOH . 
F 3 HOH B 23 423 110 HOH HOH . 
F 3 HOH B 24 424 57 HOH HOH . 
F 3 HOH B 25 425 106 HOH HOH . 
F 3 HOH B 26 426 43 HOH HOH . 
F 3 HOH B 27 427 126 HOH HOH . 
F 3 HOH B 28 428 72 HOH HOH . 
F 3 HOH B 29 429 56 HOH HOH . 
F 3 HOH B 30 430 107 HOH HOH . 
F 3 HOH B 31 431 71 HOH HOH . 
F 3 HOH B 32 432 118 HOH HOH . 
F 3 HOH B 33 433 115 HOH HOH . 
F 3 HOH B 34 434 19 HOH HOH . 
F 3 HOH B 35 435 85 HOH HOH . 
F 3 HOH B 36 436 58 HOH HOH . 
F 3 HOH B 37 437 82 HOH HOH . 
F 3 HOH B 38 438 91 HOH HOH . 
F 3 HOH B 39 439 64 HOH HOH . 
F 3 HOH B 40 440 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -36.625 -39.93 -9.338 1 32.85 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . C 2 -37.352 -40.174 -10.557 1 32.93 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . C 2 -37.706 -39.658 -8.261 1 32.63 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . C 2 -37.182 -39.371 -6.952 1 28.16 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . C 2 -38.743 -40.806 -8.254 1 21.54 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . C 2 -38.991 -40.945 -6.849 1 21.7 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#