data_5XC5
#
_model_server_result.job_id            6dz14D_EqqOgqtVGvn19RQ 
_model_server_result.datetime_utc      '2025-04-04 05:43:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xc5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5XC5 
#
_exptl.entry_id    5XC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XC5 
_cell.length_a            32.924 
_cell.length_b            53.724 
_cell.length_c            96.482 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 19 A SER 19 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc2 A OG1 THR 37 A THR 37 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc3 B O1G GTP . A GTP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc4 B O1B GTP . A GTP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 G O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 1 n n 
C OXT ACT sing 2 n n 
C CH3 ACT sing 3 n n 
CH3 H1 ACT sing 4 n n 
CH3 H2 ACT sing 5 n n 
CH3 H3 ACT sing 6 n n 
#
_atom_sites.entry_id                     5XC5 
_atom_sites.fract_transf_matrix[1][1]    0.030373 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018614 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010365 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GTP A 1 201 500 GTP GTP . 
C 3 MG A 1 202 501 MG MG . 
D 4 ACT A 1 203 901 ACT ACT . 
E 4 ACT A 1 204 902 ACT ACT . 
F 4 ACT A 1 205 903 ACT ACT . 
G 5 HOH A 1 301 775 HOH HOH . 
G 5 HOH A 2 302 712 HOH HOH . 
G 5 HOH A 3 303 682 HOH HOH . 
G 5 HOH A 4 304 789 HOH HOH . 
G 5 HOH A 5 305 616 HOH HOH . 
G 5 HOH A 6 306 736 HOH HOH . 
G 5 HOH A 7 307 754 HOH HOH . 
G 5 HOH A 8 308 645 HOH HOH . 
G 5 HOH A 9 309 751 HOH HOH . 
G 5 HOH A 10 310 773 HOH HOH . 
G 5 HOH A 11 311 693 HOH HOH . 
G 5 HOH A 12 312 711 HOH HOH . 
G 5 HOH A 13 313 659 HOH HOH . 
G 5 HOH A 14 314 714 HOH HOH . 
G 5 HOH A 15 315 794 HOH HOH . 
G 5 HOH A 16 316 686 HOH HOH . 
G 5 HOH A 17 317 781 HOH HOH . 
G 5 HOH A 18 318 677 HOH HOH . 
G 5 HOH A 19 319 610 HOH HOH . 
G 5 HOH A 20 320 657 HOH HOH . 
G 5 HOH A 21 321 771 HOH HOH . 
G 5 HOH A 22 322 668 HOH HOH . 
G 5 HOH A 23 323 621 HOH HOH . 
G 5 HOH A 24 324 722 HOH HOH . 
G 5 HOH A 25 325 687 HOH HOH . 
G 5 HOH A 26 326 604 HOH HOH . 
G 5 HOH A 27 327 755 HOH HOH . 
G 5 HOH A 28 328 624 HOH HOH . 
G 5 HOH A 29 329 756 HOH HOH . 
G 5 HOH A 30 330 602 HOH HOH . 
G 5 HOH A 31 331 759 HOH HOH . 
G 5 HOH A 32 332 660 HOH HOH . 
G 5 HOH A 33 333 723 HOH HOH . 
G 5 HOH A 34 334 629 HOH HOH . 
G 5 HOH A 35 335 728 HOH HOH . 
G 5 HOH A 36 336 611 HOH HOH . 
G 5 HOH A 37 337 675 HOH HOH . 
G 5 HOH A 38 338 702 HOH HOH . 
G 5 HOH A 39 339 636 HOH HOH . 
G 5 HOH A 40 340 713 HOH HOH . 
G 5 HOH A 41 341 634 HOH HOH . 
G 5 HOH A 42 342 685 HOH HOH . 
G 5 HOH A 43 343 766 HOH HOH . 
G 5 HOH A 44 344 732 HOH HOH . 
G 5 HOH A 45 345 670 HOH HOH . 
G 5 HOH A 46 346 661 HOH HOH . 
G 5 HOH A 47 347 672 HOH HOH . 
G 5 HOH A 48 348 608 HOH HOH . 
G 5 HOH A 49 349 777 HOH HOH . 
G 5 HOH A 50 350 607 HOH HOH . 
G 5 HOH A 51 351 601 HOH HOH . 
G 5 HOH A 52 352 678 HOH HOH . 
G 5 HOH A 53 353 605 HOH HOH . 
G 5 HOH A 54 354 774 HOH HOH . 
G 5 HOH A 55 355 655 HOH HOH . 
G 5 HOH A 56 356 649 HOH HOH . 
G 5 HOH A 57 357 674 HOH HOH . 
G 5 HOH A 58 358 640 HOH HOH . 
G 5 HOH A 59 359 684 HOH HOH . 
G 5 HOH A 60 360 613 HOH HOH . 
G 5 HOH A 61 361 733 HOH HOH . 
G 5 HOH A 62 362 730 HOH HOH . 
G 5 HOH A 63 363 628 HOH HOH . 
G 5 HOH A 64 364 646 HOH HOH . 
G 5 HOH A 65 365 626 HOH HOH . 
G 5 HOH A 66 366 676 HOH HOH . 
G 5 HOH A 67 367 737 HOH HOH . 
G 5 HOH A 68 368 606 HOH HOH . 
G 5 HOH A 69 369 615 HOH HOH . 
G 5 HOH A 70 370 776 HOH HOH . 
G 5 HOH A 71 371 631 HOH HOH . 
G 5 HOH A 72 372 627 HOH HOH . 
G 5 HOH A 73 373 708 HOH HOH . 
G 5 HOH A 74 374 707 HOH HOH . 
G 5 HOH A 75 375 760 HOH HOH . 
G 5 HOH A 76 376 792 HOH HOH . 
G 5 HOH A 77 377 701 HOH HOH . 
G 5 HOH A 78 378 778 HOH HOH . 
G 5 HOH A 79 379 700 HOH HOH . 
G 5 HOH A 80 380 715 HOH HOH . 
G 5 HOH A 81 381 706 HOH HOH . 
G 5 HOH A 82 382 642 HOH HOH . 
G 5 HOH A 83 383 747 HOH HOH . 
G 5 HOH A 84 384 665 HOH HOH . 
G 5 HOH A 85 385 614 HOH HOH . 
G 5 HOH A 86 386 698 HOH HOH . 
G 5 HOH A 87 387 644 HOH HOH . 
G 5 HOH A 88 388 637 HOH HOH . 
G 5 HOH A 89 389 669 HOH HOH . 
G 5 HOH A 90 390 643 HOH HOH . 
G 5 HOH A 91 391 783 HOH HOH . 
G 5 HOH A 92 392 743 HOH HOH . 
G 5 HOH A 93 393 603 HOH HOH . 
G 5 HOH A 94 394 726 HOH HOH . 
G 5 HOH A 95 395 767 HOH HOH . 
G 5 HOH A 96 396 641 HOH HOH . 
G 5 HOH A 97 397 630 HOH HOH . 
G 5 HOH A 98 398 673 HOH HOH . 
G 5 HOH A 99 399 666 HOH HOH . 
G 5 HOH A 100 400 716 HOH HOH . 
G 5 HOH A 101 401 710 HOH HOH . 
G 5 HOH A 102 402 652 HOH HOH . 
G 5 HOH A 103 403 786 HOH HOH . 
G 5 HOH A 104 404 658 HOH HOH . 
G 5 HOH A 105 405 638 HOH HOH . 
G 5 HOH A 106 406 694 HOH HOH . 
G 5 HOH A 107 407 746 HOH HOH . 
G 5 HOH A 108 408 639 HOH HOH . 
G 5 HOH A 109 409 681 HOH HOH . 
G 5 HOH A 110 410 725 HOH HOH . 
G 5 HOH A 111 411 667 HOH HOH . 
G 5 HOH A 112 412 609 HOH HOH . 
G 5 HOH A 113 413 788 HOH HOH . 
G 5 HOH A 114 414 647 HOH HOH . 
G 5 HOH A 115 415 749 HOH HOH . 
G 5 HOH A 116 416 689 HOH HOH . 
G 5 HOH A 117 417 761 HOH HOH . 
G 5 HOH A 118 418 785 HOH HOH . 
G 5 HOH A 119 419 632 HOH HOH . 
G 5 HOH A 120 420 663 HOH HOH . 
G 5 HOH A 121 421 619 HOH HOH . 
G 5 HOH A 122 422 765 HOH HOH . 
G 5 HOH A 123 423 782 HOH HOH . 
G 5 HOH A 124 424 695 HOH HOH . 
G 5 HOH A 125 425 654 HOH HOH . 
G 5 HOH A 126 426 692 HOH HOH . 
G 5 HOH A 127 427 753 HOH HOH . 
G 5 HOH A 128 428 617 HOH HOH . 
G 5 HOH A 129 429 688 HOH HOH . 
G 5 HOH A 130 430 623 HOH HOH . 
G 5 HOH A 131 431 680 HOH HOH . 
G 5 HOH A 132 432 635 HOH HOH . 
G 5 HOH A 133 433 650 HOH HOH . 
G 5 HOH A 134 434 683 HOH HOH . 
G 5 HOH A 135 435 612 HOH HOH . 
G 5 HOH A 136 436 745 HOH HOH . 
G 5 HOH A 137 437 671 HOH HOH . 
G 5 HOH A 138 438 625 HOH HOH . 
G 5 HOH A 139 439 656 HOH HOH . 
G 5 HOH A 140 440 793 HOH HOH . 
G 5 HOH A 141 441 741 HOH HOH . 
G 5 HOH A 142 442 648 HOH HOH . 
G 5 HOH A 143 443 739 HOH HOH . 
G 5 HOH A 144 444 724 HOH HOH . 
G 5 HOH A 145 445 690 HOH HOH . 
G 5 HOH A 146 446 709 HOH HOH . 
G 5 HOH A 147 447 750 HOH HOH . 
G 5 HOH A 148 448 780 HOH HOH . 
G 5 HOH A 149 449 704 HOH HOH . 
G 5 HOH A 150 450 718 HOH HOH . 
G 5 HOH A 151 451 620 HOH HOH . 
G 5 HOH A 152 452 721 HOH HOH . 
G 5 HOH A 153 453 762 HOH HOH . 
G 5 HOH A 154 454 764 HOH HOH . 
G 5 HOH A 155 455 742 HOH HOH . 
G 5 HOH A 156 456 651 HOH HOH . 
G 5 HOH A 157 457 705 HOH HOH . 
G 5 HOH A 158 458 738 HOH HOH . 
G 5 HOH A 159 459 662 HOH HOH . 
G 5 HOH A 160 460 770 HOH HOH . 
G 5 HOH A 161 461 791 HOH HOH . 
G 5 HOH A 162 462 772 HOH HOH . 
G 5 HOH A 163 463 703 HOH HOH . 
G 5 HOH A 164 464 622 HOH HOH . 
G 5 HOH A 165 465 696 HOH HOH . 
G 5 HOH A 166 466 727 HOH HOH . 
G 5 HOH A 167 467 731 HOH HOH . 
G 5 HOH A 168 468 697 HOH HOH . 
G 5 HOH A 169 469 744 HOH HOH . 
G 5 HOH A 170 470 752 HOH HOH . 
G 5 HOH A 171 471 729 HOH HOH . 
G 5 HOH A 172 472 784 HOH HOH . 
G 5 HOH A 173 473 734 HOH HOH . 
G 5 HOH A 174 474 633 HOH HOH . 
G 5 HOH A 175 475 717 HOH HOH . 
G 5 HOH A 176 476 735 HOH HOH . 
G 5 HOH A 177 477 691 HOH HOH . 
G 5 HOH A 178 478 787 HOH HOH . 
G 5 HOH A 179 479 740 HOH HOH . 
G 5 HOH A 180 480 699 HOH HOH . 
G 5 HOH A 181 481 664 HOH HOH . 
G 5 HOH A 182 482 763 HOH HOH . 
G 5 HOH A 183 483 768 HOH HOH . 
G 5 HOH A 184 484 790 HOH HOH . 
G 5 HOH A 185 485 748 HOH HOH . 
G 5 HOH A 186 486 795 HOH HOH . 
G 5 HOH A 187 487 653 HOH HOH . 
G 5 HOH A 188 488 758 HOH HOH . 
G 5 HOH A 189 489 769 HOH HOH . 
G 5 HOH A 190 490 679 HOH HOH . 
G 5 HOH A 191 491 719 HOH HOH . 
G 5 HOH A 192 492 757 HOH HOH . 
G 5 HOH A 193 493 779 HOH HOH . 
G 5 HOH A 194 494 720 HOH HOH . 
G 5 HOH A 195 495 618 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . D 4 22.712 17.549 23.827 1 13.81 ? C ACT 203 A 1 
HETATM 2 O O ACT . . . D 4 21.931 17.127 22.956 1 13.62 ? O ACT 203 A 1 
HETATM 3 O OXT ACT . . . D 4 22.635 18.744 24.135 1 15.24 ? OXT ACT 203 A 1 
HETATM 4 C CH3 ACT . . . D 4 23.689 16.669 24.489 1 15.61 ? CH3 ACT 203 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           1161 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#