data_5XCZ # _model_server_result.job_id j5BCFgCJto-ZQZpVFpVqFg _model_server_result.datetime_utc '2024-11-24 06:36:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":503}' # _entry.id 5XCZ # _exptl.entry_id 5XCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XCZ _cell.length_a 54.502 _cell.length_b 66.951 _cell.length_c 85.116 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 1 GLC 2 n B BGC 2 B 2 BGC A 2 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 90 A CYS 171 1_555 A SG CYS 149 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 280 A CYS 361 1_555 A SG CYS 327 A CYS 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 B O4 GLC . B GLC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 382 n n C C2 TRS sing 383 n n C C3 TRS sing 384 n n C N TRS sing 385 n n C1 O1 TRS sing 386 n n C1 H11 TRS sing 387 n n C1 H12 TRS sing 388 n n C2 O2 TRS sing 389 n n C2 H21 TRS sing 390 n n C2 H22 TRS sing 391 n n C3 O3 TRS sing 392 n n C3 H31 TRS sing 393 n n C3 H32 TRS sing 394 n n N HN1 TRS sing 395 n n N HN2 TRS sing 396 n n N HN3 TRS sing 397 n n O1 HO1 TRS sing 398 n n O2 HO2 TRS sing 399 n n O3 HO3 TRS sing 400 n n # _atom_sites.entry_id 5XCZ _atom_sites.fract_transf_matrix[1][1] 0.018348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TRS A 1 503 3 TRS TRS . D 4 HOH A 1 601 2150 HOH HOH . D 4 HOH A 2 602 2293 HOH HOH . D 4 HOH A 3 603 2122 HOH HOH . D 4 HOH A 4 604 2096 HOH HOH . D 4 HOH A 5 605 2095 HOH HOH . D 4 HOH A 6 606 2009 HOH HOH . D 4 HOH A 7 607 2258 HOH HOH . D 4 HOH A 8 608 2210 HOH HOH . D 4 HOH A 9 609 2130 HOH HOH . D 4 HOH A 10 610 2069 HOH HOH . D 4 HOH A 11 611 2115 HOH HOH . D 4 HOH A 12 612 2011 HOH HOH . D 4 HOH A 13 613 2044 HOH HOH . D 4 HOH A 14 614 2231 HOH HOH . D 4 HOH A 15 615 2045 HOH HOH . D 4 HOH A 16 616 2125 HOH HOH . D 4 HOH A 17 617 2292 HOH HOH . D 4 HOH A 18 618 2088 HOH HOH . D 4 HOH A 19 619 2107 HOH HOH . D 4 HOH A 20 620 2188 HOH HOH . D 4 HOH A 21 621 2253 HOH HOH . D 4 HOH A 22 622 2149 HOH HOH . D 4 HOH A 23 623 2295 HOH HOH . D 4 HOH A 24 624 2158 HOH HOH . D 4 HOH A 25 625 2257 HOH HOH . D 4 HOH A 26 626 2141 HOH HOH . D 4 HOH A 27 627 2079 HOH HOH . D 4 HOH A 28 628 2047 HOH HOH . D 4 HOH A 29 629 2023 HOH HOH . D 4 HOH A 30 630 2057 HOH HOH . D 4 HOH A 31 631 2286 HOH HOH . D 4 HOH A 32 632 2212 HOH HOH . D 4 HOH A 33 633 2058 HOH HOH . D 4 HOH A 34 634 2014 HOH HOH . D 4 HOH A 35 635 2144 HOH HOH . D 4 HOH A 36 636 2097 HOH HOH . D 4 HOH A 37 637 2140 HOH HOH . D 4 HOH A 38 638 2004 HOH HOH . D 4 HOH A 39 639 2013 HOH HOH . D 4 HOH A 40 640 2181 HOH HOH . D 4 HOH A 41 641 2059 HOH HOH . D 4 HOH A 42 642 2227 HOH HOH . D 4 HOH A 43 643 2104 HOH HOH . D 4 HOH A 44 644 2076 HOH HOH . D 4 HOH A 45 645 2213 HOH HOH . D 4 HOH A 46 646 2042 HOH HOH . D 4 HOH A 47 647 2152 HOH HOH . D 4 HOH A 48 648 2193 HOH HOH . D 4 HOH A 49 649 2039 HOH HOH . D 4 HOH A 50 650 2054 HOH HOH . D 4 HOH A 51 651 2162 HOH HOH . D 4 HOH A 52 652 2090 HOH HOH . D 4 HOH A 53 653 2092 HOH HOH . D 4 HOH A 54 654 2209 HOH HOH . D 4 HOH A 55 655 2010 HOH HOH . D 4 HOH A 56 656 2071 HOH HOH . D 4 HOH A 57 657 2288 HOH HOH . D 4 HOH A 58 658 2102 HOH HOH . D 4 HOH A 59 659 2063 HOH HOH . D 4 HOH A 60 660 2066 HOH HOH . D 4 HOH A 61 661 2098 HOH HOH . D 4 HOH A 62 662 2161 HOH HOH . D 4 HOH A 63 663 2033 HOH HOH . D 4 HOH A 64 664 2037 HOH HOH . D 4 HOH A 65 665 2019 HOH HOH . D 4 HOH A 66 666 2236 HOH HOH . D 4 HOH A 67 667 2026 HOH HOH . D 4 HOH A 68 668 2018 HOH HOH . D 4 HOH A 69 669 2255 HOH HOH . D 4 HOH A 70 670 2003 HOH HOH . D 4 HOH A 71 671 2289 HOH HOH . D 4 HOH A 72 672 2287 HOH HOH . D 4 HOH A 73 673 2087 HOH HOH . D 4 HOH A 74 674 2159 HOH HOH . D 4 HOH A 75 675 2077 HOH HOH . D 4 HOH A 76 676 2007 HOH HOH . D 4 HOH A 77 677 2012 HOH HOH . D 4 HOH A 78 678 2131 HOH HOH . D 4 HOH A 79 679 2243 HOH HOH . D 4 HOH A 80 680 2120 HOH HOH . D 4 HOH A 81 681 2064 HOH HOH . D 4 HOH A 82 682 2296 HOH HOH . D 4 HOH A 83 683 2198 HOH HOH . D 4 HOH A 84 684 2189 HOH HOH . D 4 HOH A 85 685 2084 HOH HOH . D 4 HOH A 86 686 2075 HOH HOH . D 4 HOH A 87 687 2134 HOH HOH . D 4 HOH A 88 688 2179 HOH HOH . D 4 HOH A 89 689 2180 HOH HOH . D 4 HOH A 90 690 2148 HOH HOH . D 4 HOH A 91 691 2105 HOH HOH . D 4 HOH A 92 692 2072 HOH HOH . D 4 HOH A 93 693 2036 HOH HOH . D 4 HOH A 94 694 2049 HOH HOH . D 4 HOH A 95 695 2002 HOH HOH . D 4 HOH A 96 696 2091 HOH HOH . D 4 HOH A 97 697 2043 HOH HOH . D 4 HOH A 98 698 2074 HOH HOH . D 4 HOH A 99 699 2127 HOH HOH . D 4 HOH A 100 700 2163 HOH HOH . D 4 HOH A 101 701 2025 HOH HOH . D 4 HOH A 102 702 2142 HOH HOH . D 4 HOH A 103 703 2089 HOH HOH . D 4 HOH A 104 704 2060 HOH HOH . D 4 HOH A 105 705 2117 HOH HOH . D 4 HOH A 106 706 2001 HOH HOH . D 4 HOH A 107 707 2062 HOH HOH . D 4 HOH A 108 708 2035 HOH HOH . D 4 HOH A 109 709 2005 HOH HOH . D 4 HOH A 110 710 2135 HOH HOH . D 4 HOH A 111 711 2056 HOH HOH . D 4 HOH A 112 712 2170 HOH HOH . D 4 HOH A 113 713 2034 HOH HOH . D 4 HOH A 114 714 2028 HOH HOH . D 4 HOH A 115 715 2208 HOH HOH . D 4 HOH A 116 716 2237 HOH HOH . D 4 HOH A 117 717 2041 HOH HOH . D 4 HOH A 118 718 2137 HOH HOH . D 4 HOH A 119 719 2128 HOH HOH . D 4 HOH A 120 720 2119 HOH HOH . D 4 HOH A 121 721 2121 HOH HOH . D 4 HOH A 122 722 2154 HOH HOH . D 4 HOH A 123 723 2055 HOH HOH . D 4 HOH A 124 724 2015 HOH HOH . D 4 HOH A 125 725 2048 HOH HOH . D 4 HOH A 126 726 2166 HOH HOH . D 4 HOH A 127 727 2205 HOH HOH . D 4 HOH A 128 728 2202 HOH HOH . D 4 HOH A 129 729 2139 HOH HOH . D 4 HOH A 130 730 2016 HOH HOH . D 4 HOH A 131 731 2032 HOH HOH . D 4 HOH A 132 732 2061 HOH HOH . D 4 HOH A 133 733 2027 HOH HOH . D 4 HOH A 134 734 2126 HOH HOH . D 4 HOH A 135 735 2101 HOH HOH . D 4 HOH A 136 736 2191 HOH HOH . D 4 HOH A 137 737 2108 HOH HOH . D 4 HOH A 138 738 2272 HOH HOH . D 4 HOH A 139 739 2147 HOH HOH . D 4 HOH A 140 740 2112 HOH HOH . D 4 HOH A 141 741 2195 HOH HOH . D 4 HOH A 142 742 2093 HOH HOH . D 4 HOH A 143 743 2118 HOH HOH . D 4 HOH A 144 744 2133 HOH HOH . D 4 HOH A 145 745 2110 HOH HOH . D 4 HOH A 146 746 2165 HOH HOH . D 4 HOH A 147 747 2103 HOH HOH . D 4 HOH A 148 748 2278 HOH HOH . D 4 HOH A 149 749 2172 HOH HOH . D 4 HOH A 150 750 2006 HOH HOH . D 4 HOH A 151 751 2106 HOH HOH . D 4 HOH A 152 752 2177 HOH HOH . D 4 HOH A 153 753 2124 HOH HOH . D 4 HOH A 154 754 2070 HOH HOH . D 4 HOH A 155 755 2073 HOH HOH . D 4 HOH A 156 756 2207 HOH HOH . D 4 HOH A 157 757 2218 HOH HOH . D 4 HOH A 158 758 2081 HOH HOH . D 4 HOH A 159 759 2123 HOH HOH . D 4 HOH A 160 760 2017 HOH HOH . D 4 HOH A 161 761 2065 HOH HOH . D 4 HOH A 162 762 2261 HOH HOH . D 4 HOH A 163 763 2168 HOH HOH . D 4 HOH A 164 764 2174 HOH HOH . D 4 HOH A 165 765 2228 HOH HOH . D 4 HOH A 166 766 2196 HOH HOH . D 4 HOH A 167 767 2201 HOH HOH . D 4 HOH A 168 768 2176 HOH HOH . D 4 HOH A 169 769 2234 HOH HOH . D 4 HOH A 170 770 2146 HOH HOH . D 4 HOH A 171 771 2068 HOH HOH . D 4 HOH A 172 772 2050 HOH HOH . D 4 HOH A 173 773 2153 HOH HOH . D 4 HOH A 174 774 2160 HOH HOH . D 4 HOH A 175 775 2145 HOH HOH . D 4 HOH A 176 776 2111 HOH HOH . D 4 HOH A 177 777 2269 HOH HOH . D 4 HOH A 178 778 2197 HOH HOH . D 4 HOH A 179 779 2021 HOH HOH . D 4 HOH A 180 780 2100 HOH HOH . D 4 HOH A 181 781 2175 HOH HOH . D 4 HOH A 182 782 2156 HOH HOH . D 4 HOH A 183 783 2178 HOH HOH . D 4 HOH A 184 784 2182 HOH HOH . D 4 HOH A 185 785 2129 HOH HOH . D 4 HOH A 186 786 2247 HOH HOH . D 4 HOH A 187 787 2082 HOH HOH . D 4 HOH A 188 788 2277 HOH HOH . D 4 HOH A 189 789 2256 HOH HOH . D 4 HOH A 190 790 2083 HOH HOH . D 4 HOH A 191 791 2226 HOH HOH . D 4 HOH A 192 792 2248 HOH HOH . D 4 HOH A 193 793 2169 HOH HOH . D 4 HOH A 194 794 2225 HOH HOH . D 4 HOH A 195 795 2080 HOH HOH . D 4 HOH A 196 796 2215 HOH HOH . D 4 HOH A 197 797 2113 HOH HOH . D 4 HOH A 198 798 2199 HOH HOH . D 4 HOH A 199 799 2254 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . A . C 3 13.219 -1.404 -13.888 0.62 22.01 ? C TRS 503 A 1 HETATM 2 C C TRS . B . C 3 13.32 -1.955 -14.717 0.38 19.71 ? C TRS 503 A 1 HETATM 3 C C1 TRS . A . C 3 13.048 -1.68 -15.369 0.62 21.22 ? C1 TRS 503 A 1 HETATM 4 C C1 TRS . B . C 3 12.739 -3.323 -14.414 0.38 20.74 ? C1 TRS 503 A 1 HETATM 5 C C2 TRS . A . C 3 12.568 -2.492 -13.052 0.62 22.81 ? C2 TRS 503 A 1 HETATM 6 C C2 TRS . B . C 3 13.694 -1.244 -13.426 0.38 23.5 ? C2 TRS 503 A 1 HETATM 7 C C3 TRS . A . C 3 12.542 -0.09 -13.543 0.62 22.66 ? C3 TRS 503 A 1 HETATM 8 C C3 TRS . B . C 3 12.276 -1.163 -15.491 0.38 21.04 ? C3 TRS 503 A 1 HETATM 9 N N TRS . A . C 3 14.655 -1.292 -13.58 0.62 23.38 ? N TRS 503 A 1 HETATM 10 N N TRS . B . C 3 14.544 -2.088 -15.514 0.38 22.21 ? N TRS 503 A 1 HETATM 11 O O1 TRS . A . C 3 13.899 -0.805 -16.089 0.62 21.37 ? O1 TRS 503 A 1 HETATM 12 O O1 TRS . B . C 3 13.708 -4.317 -14.637 0.38 18.73 ? O1 TRS 503 A 1 HETATM 13 O O2 TRS . A . C 3 11.166 -2.36 -13.176 0.62 21.65 ? O2 TRS 503 A 1 HETATM 14 O O2 TRS . B . C 3 15.086 -1.353 -13.189 0.38 21.48 ? O2 TRS 503 A 1 HETATM 15 O O3 TRS . A . C 3 12.807 0.859 -14.545 0.62 20.41 ? O3 TRS 503 A 1 HETATM 16 O O3 TRS . B . C 3 11.588 -2.027 -16.373 0.38 18.28 ? O3 TRS 503 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #