data_5XDN # _model_server_result.job_id lqo7kYr2i54sHK0lq3asNQ _model_server_result.datetime_utc '2025-08-31 00:45:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5XDN # _exptl.entry_id 5XDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XDN _cell.length_a 58.7 _cell.length_b 84.96 _cell.length_c 146.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 324 n n C1 H11 OCT sing 325 n n C1 H12 OCT sing 326 n n C1 H13 OCT sing 327 n n C2 C3 OCT sing 328 n n C2 H21 OCT sing 329 n n C2 H22 OCT sing 330 n n C3 C4 OCT sing 331 n n C3 H31 OCT sing 332 n n C3 H32 OCT sing 333 n n C4 C5 OCT sing 334 n n C4 H41 OCT sing 335 n n C4 H42 OCT sing 336 n n C5 C6 OCT sing 337 n n C5 H51 OCT sing 338 n n C5 H52 OCT sing 339 n n C6 C7 OCT sing 340 n n C6 H61 OCT sing 341 n n C6 H62 OCT sing 342 n n C7 C8 OCT sing 343 n n C7 H71 OCT sing 344 n n C7 H72 OCT sing 345 n n C8 H81 OCT sing 346 n n C8 H82 OCT sing 347 n n C8 H83 OCT sing 348 n n # _atom_sites.entry_id 5XDN _atom_sites.fract_transf_matrix[1][1] 0.017036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 D12 A 1 301 2 D12 D12 . D 3 HEX A 1 302 1 HEX HEX . E 4 OCT A 1 303 1 OCT OCT . F 5 D10 B 1 301 1 D10 D10 . G 5 D10 B 1 302 2 D10 D10 . H 2 D12 B 1 303 1 D12 D12 . I 3 HEX B 1 304 2 HEX HEX . J 3 HEX B 1 305 3 HEX HEX . K 3 HEX B 1 306 4 HEX HEX . L 6 HOH A 1 401 10 HOH HOH . L 6 HOH A 2 402 50 HOH HOH . L 6 HOH A 3 403 22 HOH HOH . L 6 HOH A 4 404 35 HOH HOH . L 6 HOH A 5 405 51 HOH HOH . L 6 HOH A 6 406 4 HOH HOH . L 6 HOH A 7 407 45 HOH HOH . L 6 HOH A 8 408 5 HOH HOH . L 6 HOH A 9 409 26 HOH HOH . L 6 HOH A 10 410 52 HOH HOH . L 6 HOH A 11 411 27 HOH HOH . L 6 HOH A 12 412 13 HOH HOH . L 6 HOH A 13 413 41 HOH HOH . L 6 HOH A 14 414 49 HOH HOH . L 6 HOH A 15 415 7 HOH HOH . L 6 HOH A 16 416 36 HOH HOH . L 6 HOH A 17 417 8 HOH HOH . L 6 HOH A 18 418 6 HOH HOH . L 6 HOH A 19 419 24 HOH HOH . L 6 HOH A 20 420 25 HOH HOH . L 6 HOH A 21 421 28 HOH HOH . L 6 HOH A 22 422 21 HOH HOH . L 6 HOH A 23 423 43 HOH HOH . L 6 HOH A 24 424 33 HOH HOH . L 6 HOH A 25 425 30 HOH HOH . L 6 HOH A 26 426 20 HOH HOH . L 6 HOH A 27 427 31 HOH HOH . L 6 HOH A 28 428 14 HOH HOH . L 6 HOH A 29 429 29 HOH HOH . L 6 HOH A 30 430 42 HOH HOH . L 6 HOH A 31 431 18 HOH HOH . L 6 HOH A 32 432 32 HOH HOH . L 6 HOH A 33 433 53 HOH HOH . L 6 HOH A 34 434 54 HOH HOH . L 6 HOH A 35 435 44 HOH HOH . L 6 HOH A 36 436 40 HOH HOH . L 6 HOH A 37 437 34 HOH HOH . M 6 HOH B 1 401 2 HOH HOH . M 6 HOH B 2 402 56 HOH HOH . M 6 HOH B 3 403 1 HOH HOH . M 6 HOH B 4 404 17 HOH HOH . M 6 HOH B 5 405 48 HOH HOH . M 6 HOH B 6 406 3 HOH HOH . M 6 HOH B 7 407 23 HOH HOH . M 6 HOH B 8 408 19 HOH HOH . M 6 HOH B 9 409 39 HOH HOH . M 6 HOH B 10 410 12 HOH HOH . M 6 HOH B 11 411 46 HOH HOH . M 6 HOH B 12 412 47 HOH HOH . M 6 HOH B 13 413 55 HOH HOH . M 6 HOH B 14 414 15 HOH HOH . M 6 HOH B 15 415 37 HOH HOH . M 6 HOH B 16 416 38 HOH HOH . M 6 HOH B 17 417 11 HOH HOH . M 6 HOH B 18 418 9 HOH HOH . M 6 HOH B 19 419 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . E 4 76.239 25.747 161.61 1 79.42 ? C1 OCT 303 A 1 HETATM 2 C C2 OCT . . . E 4 76.673 27.151 161.203 1 82.34 ? C2 OCT 303 A 1 HETATM 3 C C3 OCT . . . E 4 75.598 27.76 160.302 1 73.65 ? C3 OCT 303 A 1 HETATM 4 C C4 OCT . . . E 4 76.09 29.1 159.753 1 64.33 ? C4 OCT 303 A 1 HETATM 5 C C5 OCT . . . E 4 75.862 30.269 160.705 1 63.91 ? C5 OCT 303 A 1 HETATM 6 C C6 OCT . . . E 4 77.044 31.212 160.518 1 65.28 ? C6 OCT 303 A 1 HETATM 7 C C7 OCT . . . E 4 76.894 32.471 161.425 1 64.62 ? C7 OCT 303 A 1 HETATM 8 C C8 OCT . . . E 4 78.258 33.17 161.417 1 63.15 ? C8 OCT 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #