data_5XDO # _model_server_result.job_id NY2rb4yk6r6Tcy-KXJT-eg _model_server_result.datetime_utc '2024-12-23 06:21:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 5XDO # _exptl.entry_id 5XDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 72.149 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XDO _cell.length_a 121.62 _cell.length_b 146.33 _cell.length_c 77.53 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _chem_comp.formula 'C5 H12' _chem_comp.formula_weight 72.149 _chem_comp.id LNK _chem_comp.mon_nstd_flag . _chem_comp.name PENTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LNK sing 213 n n C1 H11 LNK sing 214 n n C1 H12 LNK sing 215 n n C1 H13 LNK sing 216 n n C2 C3 LNK sing 217 n n C2 H21 LNK sing 218 n n C2 H22 LNK sing 219 n n C3 C4 LNK sing 220 n n C3 H31 LNK sing 221 n n C3 H32 LNK sing 222 n n C4 C5 LNK sing 223 n n C4 H41 LNK sing 224 n n C4 H42 LNK sing 225 n n C5 H51 LNK sing 226 n n C5 H52 LNK sing 227 n n C5 H23 LNK sing 228 n n # _atom_sites.entry_id 5XDO _atom_sites.fract_transf_matrix[1][1] 0.008222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPD A 1 301 2 SPD SPD . D 3 OCT A 1 302 2 OCT OCT . E 3 OCT A 1 303 4 OCT OCT . F 4 LNK A 1 304 1 LNK LNK . G 4 LNK A 1 305 2 LNK LNK . H 5 HEX A 1 306 1 HEX HEX . I 2 SPD B 1 301 1 SPD SPD . J 3 OCT B 1 302 1 OCT OCT . K 3 OCT B 1 303 3 OCT OCT . L 6 HOH A 1 401 6 HOH HOH . L 6 HOH A 2 402 2 HOH HOH . L 6 HOH A 3 403 13 HOH HOH . L 6 HOH A 4 404 12 HOH HOH . L 6 HOH A 5 405 1 HOH HOH . L 6 HOH A 6 406 5 HOH HOH . L 6 HOH A 7 407 10 HOH HOH . L 6 HOH A 8 408 3 HOH HOH . L 6 HOH A 9 409 4 HOH HOH . L 6 HOH A 10 410 17 HOH HOH . L 6 HOH A 11 411 11 HOH HOH . M 6 HOH B 1 401 14 HOH HOH . M 6 HOH B 2 402 8 HOH HOH . M 6 HOH B 3 403 9 HOH HOH . M 6 HOH B 4 404 7 HOH HOH . M 6 HOH B 5 405 15 HOH HOH . M 6 HOH B 6 406 16 HOH HOH . M 6 HOH B 7 407 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LNK . . . G 4 -48.453 -28.191 27.655 1 75.95 ? C1 LNK 305 A 1 HETATM 2 C C2 LNK . . . G 4 -48.393 -28.601 29.125 1 82.26 ? C2 LNK 305 A 1 HETATM 3 C C3 LNK . . . G 4 -48.764 -27.408 30.004 1 77.22 ? C3 LNK 305 A 1 HETATM 4 C C4 LNK . . . G 4 -48.651 -27.804 31.475 1 70.11 ? C4 LNK 305 A 1 HETATM 5 C C5 LNK . . . G 4 -48.875 -26.575 32.352 1 66.45 ? C5 LNK 305 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #