data_5XDU # _model_server_result.job_id kk0D7j9EZe32hMO6BmAiqA _model_server_result.datetime_utc '2025-07-16 08:47:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5XDU # _exptl.entry_id 5XDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[[5-bromanyl-4-[4-(trifluoromethyl)phenyl]-1,3-oxazol-2-yl]methoxy]-2,6-bis(fluoranyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.75 _cell.angle_gamma 90 _cell.entry_id 5XDU _cell.length_a 70.759 _cell.length_b 51.574 _cell.length_c 86.661 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 192 A LEU 200 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc2 A O VAL 195 A VAL 203 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc3 A OD1 ASN 200 A ASN 208 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc4 A O LEU 201 A LEU 209 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc5 C CA CA . A CA 402 1_555 D O1 ZI6 . A ZI6 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc6 C CA CA . A CA 402 1_555 E O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? # _chem_comp.formula 'C18 H10 Br F5 N2 O3' _chem_comp.formula_weight 477.18 _chem_comp.id ZI6 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[[5-bromanyl-4-[4-(trifluoromethyl)phenyl]-1,3-oxazol-2-yl]methoxy]-2,6-bis(fluoranyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 ZI6 sing 356 n n C8 O2 ZI6 sing 357 n n O3 C9 ZI6 sing 358 n y O3 C11 ZI6 sing 359 n y BR1 C11 ZI6 sing 360 n n C5 C6 ZI6 doub 361 n y C5 C4 ZI6 sing 362 n y C9 N2 ZI6 doub 363 n y O2 C4 ZI6 sing 364 n n C6 C7 ZI6 sing 365 n y C11 C10 ZI6 doub 366 n y C4 C3 ZI6 doub 367 n y N1 C1 ZI6 sing 368 n n C7 F1 ZI6 sing 369 n n C7 C2 ZI6 doub 370 n y C3 C2 ZI6 sing 371 n y C3 F2 ZI6 sing 372 n n N2 C10 ZI6 sing 373 n y C2 C1 ZI6 sing 374 n n C10 C12 ZI6 sing 375 n n C1 O1 ZI6 doub 376 n n C17 C12 ZI6 doub 377 n y C17 C16 ZI6 sing 378 n y C12 C13 ZI6 sing 379 n y C16 C15 ZI6 doub 380 n y C13 C14 ZI6 doub 381 n y C15 C14 ZI6 sing 382 n y C15 C18 ZI6 sing 383 n n F5 C18 ZI6 sing 384 n n F3 C18 ZI6 sing 385 n n C18 F4 ZI6 sing 386 n n C14 H1 ZI6 sing 387 n n C13 H2 ZI6 sing 388 n n C16 H3 ZI6 sing 389 n n C17 H4 ZI6 sing 390 n n C8 H5 ZI6 sing 391 n n C8 H6 ZI6 sing 392 n n C5 H7 ZI6 sing 393 n n C6 H8 ZI6 sing 394 n n N1 H9 ZI6 sing 395 n n N1 H10 ZI6 sing 396 n n # _atom_sites.entry_id 5XDU _atom_sites.fract_transf_matrix[1][1] 0.014132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004798 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 401 1 GDP GDP . C 3 CA A 1 402 1 CA CA . D 4 ZI6 A 1 403 1 ZI6 ZI6 . E 5 HOH A 1 501 71 HOH HOH . E 5 HOH A 2 502 193 HOH HOH . E 5 HOH A 3 503 114 HOH HOH . E 5 HOH A 4 504 10 HOH HOH . E 5 HOH A 5 505 14 HOH HOH . E 5 HOH A 6 506 23 HOH HOH . E 5 HOH A 7 507 199 HOH HOH . E 5 HOH A 8 508 120 HOH HOH . E 5 HOH A 9 509 146 HOH HOH . E 5 HOH A 10 510 65 HOH HOH . E 5 HOH A 11 511 15 HOH HOH . E 5 HOH A 12 512 12 HOH HOH . E 5 HOH A 13 513 74 HOH HOH . E 5 HOH A 14 514 131 HOH HOH . E 5 HOH A 15 515 21 HOH HOH . E 5 HOH A 16 516 182 HOH HOH . E 5 HOH A 17 517 102 HOH HOH . E 5 HOH A 18 518 76 HOH HOH . E 5 HOH A 19 519 126 HOH HOH . E 5 HOH A 20 520 140 HOH HOH . E 5 HOH A 21 521 205 HOH HOH . E 5 HOH A 22 522 116 HOH HOH . E 5 HOH A 23 523 149 HOH HOH . E 5 HOH A 24 524 95 HOH HOH . E 5 HOH A 25 525 122 HOH HOH . E 5 HOH A 26 526 16 HOH HOH . E 5 HOH A 27 527 2 HOH HOH . E 5 HOH A 28 528 43 HOH HOH . E 5 HOH A 29 529 57 HOH HOH . E 5 HOH A 30 530 35 HOH HOH . E 5 HOH A 31 531 22 HOH HOH . E 5 HOH A 32 532 159 HOH HOH . E 5 HOH A 33 533 127 HOH HOH . E 5 HOH A 34 534 97 HOH HOH . E 5 HOH A 35 535 42 HOH HOH . E 5 HOH A 36 536 86 HOH HOH . E 5 HOH A 37 537 175 HOH HOH . E 5 HOH A 38 538 56 HOH HOH . E 5 HOH A 39 539 25 HOH HOH . E 5 HOH A 40 540 151 HOH HOH . E 5 HOH A 41 541 187 HOH HOH . E 5 HOH A 42 542 69 HOH HOH . E 5 HOH A 43 543 144 HOH HOH . E 5 HOH A 44 544 203 HOH HOH . E 5 HOH A 45 545 13 HOH HOH . E 5 HOH A 46 546 60 HOH HOH . E 5 HOH A 47 547 17 HOH HOH . E 5 HOH A 48 548 70 HOH HOH . E 5 HOH A 49 549 121 HOH HOH . E 5 HOH A 50 550 33 HOH HOH . E 5 HOH A 51 551 5 HOH HOH . E 5 HOH A 52 552 32 HOH HOH . E 5 HOH A 53 553 24 HOH HOH . E 5 HOH A 54 554 79 HOH HOH . E 5 HOH A 55 555 200 HOH HOH . E 5 HOH A 56 556 4 HOH HOH . E 5 HOH A 57 557 105 HOH HOH . E 5 HOH A 58 558 38 HOH HOH . E 5 HOH A 59 559 31 HOH HOH . E 5 HOH A 60 560 6 HOH HOH . E 5 HOH A 61 561 7 HOH HOH . E 5 HOH A 62 562 11 HOH HOH . E 5 HOH A 63 563 58 HOH HOH . E 5 HOH A 64 564 63 HOH HOH . E 5 HOH A 65 565 96 HOH HOH . E 5 HOH A 66 566 185 HOH HOH . E 5 HOH A 67 567 30 HOH HOH . E 5 HOH A 68 568 142 HOH HOH . E 5 HOH A 69 569 108 HOH HOH . E 5 HOH A 70 570 133 HOH HOH . E 5 HOH A 71 571 132 HOH HOH . E 5 HOH A 72 572 49 HOH HOH . E 5 HOH A 73 573 172 HOH HOH . E 5 HOH A 74 574 111 HOH HOH . E 5 HOH A 75 575 52 HOH HOH . E 5 HOH A 76 576 204 HOH HOH . E 5 HOH A 77 577 19 HOH HOH . E 5 HOH A 78 578 119 HOH HOH . E 5 HOH A 79 579 90 HOH HOH . E 5 HOH A 80 580 26 HOH HOH . E 5 HOH A 81 581 110 HOH HOH . E 5 HOH A 82 582 152 HOH HOH . E 5 HOH A 83 583 53 HOH HOH . E 5 HOH A 84 584 154 HOH HOH . E 5 HOH A 85 585 3 HOH HOH . E 5 HOH A 86 586 107 HOH HOH . E 5 HOH A 87 587 9 HOH HOH . E 5 HOH A 88 588 98 HOH HOH . E 5 HOH A 89 589 123 HOH HOH . E 5 HOH A 90 590 55 HOH HOH . E 5 HOH A 91 591 39 HOH HOH . E 5 HOH A 92 592 115 HOH HOH . E 5 HOH A 93 593 136 HOH HOH . E 5 HOH A 94 594 163 HOH HOH . E 5 HOH A 95 595 36 HOH HOH . E 5 HOH A 96 596 145 HOH HOH . E 5 HOH A 97 597 125 HOH HOH . E 5 HOH A 98 598 164 HOH HOH . E 5 HOH A 99 599 174 HOH HOH . E 5 HOH A 100 600 27 HOH HOH . E 5 HOH A 101 601 62 HOH HOH . E 5 HOH A 102 602 158 HOH HOH . E 5 HOH A 103 603 47 HOH HOH . E 5 HOH A 104 604 167 HOH HOH . E 5 HOH A 105 605 8 HOH HOH . E 5 HOH A 106 606 18 HOH HOH . E 5 HOH A 107 607 85 HOH HOH . E 5 HOH A 108 608 117 HOH HOH . E 5 HOH A 109 609 44 HOH HOH . E 5 HOH A 110 610 45 HOH HOH . E 5 HOH A 111 611 77 HOH HOH . E 5 HOH A 112 612 48 HOH HOH . E 5 HOH A 113 613 28 HOH HOH . E 5 HOH A 114 614 190 HOH HOH . E 5 HOH A 115 615 80 HOH HOH . E 5 HOH A 116 616 173 HOH HOH . E 5 HOH A 117 617 169 HOH HOH . E 5 HOH A 118 618 51 HOH HOH . E 5 HOH A 119 619 46 HOH HOH . E 5 HOH A 120 620 156 HOH HOH . E 5 HOH A 121 621 29 HOH HOH . E 5 HOH A 122 622 137 HOH HOH . E 5 HOH A 123 623 124 HOH HOH . E 5 HOH A 124 624 189 HOH HOH . E 5 HOH A 125 625 134 HOH HOH . E 5 HOH A 126 626 94 HOH HOH . E 5 HOH A 127 627 101 HOH HOH . E 5 HOH A 128 628 178 HOH HOH . E 5 HOH A 129 629 179 HOH HOH . E 5 HOH A 130 630 88 HOH HOH . E 5 HOH A 131 631 118 HOH HOH . E 5 HOH A 132 632 93 HOH HOH . E 5 HOH A 133 633 192 HOH HOH . E 5 HOH A 134 634 135 HOH HOH . E 5 HOH A 135 635 139 HOH HOH . E 5 HOH A 136 636 67 HOH HOH . E 5 HOH A 137 637 64 HOH HOH . E 5 HOH A 138 638 66 HOH HOH . E 5 HOH A 139 639 61 HOH HOH . E 5 HOH A 140 640 155 HOH HOH . E 5 HOH A 141 641 104 HOH HOH . E 5 HOH A 142 642 147 HOH HOH . E 5 HOH A 143 643 59 HOH HOH . E 5 HOH A 144 644 109 HOH HOH . E 5 HOH A 145 645 40 HOH HOH . E 5 HOH A 146 646 100 HOH HOH . E 5 HOH A 147 647 68 HOH HOH . E 5 HOH A 148 648 157 HOH HOH . E 5 HOH A 149 649 72 HOH HOH . E 5 HOH A 150 650 162 HOH HOH . E 5 HOH A 151 651 141 HOH HOH . E 5 HOH A 152 652 89 HOH HOH . E 5 HOH A 153 653 198 HOH HOH . E 5 HOH A 154 654 83 HOH HOH . E 5 HOH A 155 655 54 HOH HOH . E 5 HOH A 156 656 78 HOH HOH . E 5 HOH A 157 657 195 HOH HOH . E 5 HOH A 158 658 191 HOH HOH . E 5 HOH A 159 659 206 HOH HOH . E 5 HOH A 160 660 201 HOH HOH . E 5 HOH A 161 661 188 HOH HOH . E 5 HOH A 162 662 196 HOH HOH . E 5 HOH A 163 663 197 HOH HOH . E 5 HOH A 164 664 128 HOH HOH . E 5 HOH A 165 665 113 HOH HOH . E 5 HOH A 166 666 194 HOH HOH . E 5 HOH A 167 667 41 HOH HOH . E 5 HOH A 168 668 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F4 ZI6 . . . D 4 46.007 17.893 270.095 1 44.06 ? F4 ZI6 403 A 1 HETATM 2 C C18 ZI6 . . . D 4 45.927 17.592 268.797 1 44.27 ? C18 ZI6 403 A 1 HETATM 3 F F5 ZI6 . . . D 4 47.143 17.426 268.277 1 42.93 ? F5 ZI6 403 A 1 HETATM 4 F F3 ZI6 . . . D 4 45.35 16.417 268.621 1 41.18 ? F3 ZI6 403 A 1 HETATM 5 C C15 ZI6 . . . D 4 45.183 18.73 268.117 1 42.67 ? C15 ZI6 403 A 1 HETATM 6 C C14 ZI6 . . . D 4 43.785 18.909 268.171 1 44.25 ? C14 ZI6 403 A 1 HETATM 7 C C13 ZI6 . . . D 4 43.18 20.003 267.518 1 41.79 ? C13 ZI6 403 A 1 HETATM 8 C C16 ZI6 . . . D 4 45.935 19.668 267.412 1 42.58 ? C16 ZI6 403 A 1 HETATM 9 C C17 ZI6 . . . D 4 45.354 20.746 266.764 1 41.29 ? C17 ZI6 403 A 1 HETATM 10 C C12 ZI6 . . . D 4 43.968 20.925 266.813 1 41.47 ? C12 ZI6 403 A 1 HETATM 11 C C10 ZI6 . . . D 4 43.419 22.106 266.079 1 41.11 ? C10 ZI6 403 A 1 HETATM 12 N N2 ZI6 . . . D 4 44.039 23.303 265.899 1 39.71 ? N2 ZI6 403 A 1 HETATM 13 C C11 ZI6 . . . D 4 42.174 22.31 265.314 1 41.6 ? C11 ZI6 403 A 1 HETATM 14 BR BR1 ZI6 . . . D 4 40.624 21.123 264.958 1 47.12 ? BR1 ZI6 403 A 1 HETATM 15 O O3 ZI6 . . . D 4 42.092 23.518 264.766 1 41.26 ? O3 ZI6 403 A 1 HETATM 16 C C9 ZI6 . . . D 4 43.26 24.114 265.132 1 36.72 ? C9 ZI6 403 A 1 HETATM 17 C C8 ZI6 . . . D 4 43.477 25.522 264.713 1 35.71 ? C8 ZI6 403 A 1 HETATM 18 O O2 ZI6 . . . D 4 42.28 26.146 265.223 1 31.8 ? O2 ZI6 403 A 1 HETATM 19 C C4 ZI6 . . . D 4 42.102 27.497 265.333 1 30.14 ? C4 ZI6 403 A 1 HETATM 20 C C3 ZI6 . . . D 4 40.735 27.925 265.752 1 27.93 ? C3 ZI6 403 A 1 HETATM 21 F F2 ZI6 . . . D 4 39.743 27.055 266.006 1 29.09 ? F2 ZI6 403 A 1 HETATM 22 C C5 ZI6 . . . D 4 43.11 28.458 265.091 1 30.1 ? C5 ZI6 403 A 1 HETATM 23 C C6 ZI6 . . . D 4 42.834 29.822 265.25 1 28.6 ? C6 ZI6 403 A 1 HETATM 24 C C7 ZI6 . . . D 4 41.569 30.283 265.66 1 28.78 ? C7 ZI6 403 A 1 HETATM 25 F F1 ZI6 . . . D 4 41.292 31.588 265.814 1 29.87 ? F1 ZI6 403 A 1 HETATM 26 C C2 ZI6 . . . D 4 40.463 29.338 265.927 1 28.42 ? C2 ZI6 403 A 1 HETATM 27 C C1 ZI6 . . . D 4 39.079 29.768 266.313 1 28.33 ? C1 ZI6 403 A 1 HETATM 28 O O1 ZI6 . . . D 4 38.832 30.356 267.362 1 28.29 ? O1 ZI6 403 A 1 HETATM 29 N N1 ZI6 . . . D 4 38.122 29.464 265.425 1 27.14 ? N1 ZI6 403 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #