data_5XDV
#
_model_server_result.job_id            VjvJHxIBpPGXSgoJm30ctg 
_model_server_result.datetime_utc      '2025-07-16 04:33:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xdv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5XDV 
#
_exptl.entry_id    5XDV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.97 
_cell.angle_gamma         90 
_cell.entry_id            5XDV 
_cell.length_a            71.392 
_cell.length_b            50.443 
_cell.length_c            88.263 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 192 A LEU 200 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc2 A O VAL 195 A VAL 203 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc3 A OD1 ASN 200 A ASN 208 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc4 A O LEU 201 A LEU 209 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc5 C CA CA . A CA 402 1_555 D O1 ZI6 . A ZI6 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XDV 
_atom_sites.fract_transf_matrix[1][1]    0.014007 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005089 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 401 1 GDP GDP . 
C 3 CA A 1 402 1 CA CA . 
D 4 ZI6 A 1 403 1 ZI6 ZI6 . 
E 5 HOH A 1 501 198 HOH HOH . 
E 5 HOH A 2 502 141 HOH HOH . 
E 5 HOH A 3 503 185 HOH HOH . 
E 5 HOH A 4 504 205 HOH HOH . 
E 5 HOH A 5 505 31 HOH HOH . 
E 5 HOH A 6 506 8 HOH HOH . 
E 5 HOH A 7 507 191 HOH HOH . 
E 5 HOH A 8 508 35 HOH HOH . 
E 5 HOH A 9 509 20 HOH HOH . 
E 5 HOH A 10 510 143 HOH HOH . 
E 5 HOH A 11 511 211 HOH HOH . 
E 5 HOH A 12 512 208 HOH HOH . 
E 5 HOH A 13 513 136 HOH HOH . 
E 5 HOH A 14 514 59 HOH HOH . 
E 5 HOH A 15 515 169 HOH HOH . 
E 5 HOH A 16 516 78 HOH HOH . 
E 5 HOH A 17 517 70 HOH HOH . 
E 5 HOH A 18 518 187 HOH HOH . 
E 5 HOH A 19 519 9 HOH HOH . 
E 5 HOH A 20 520 114 HOH HOH . 
E 5 HOH A 21 521 223 HOH HOH . 
E 5 HOH A 22 522 16 HOH HOH . 
E 5 HOH A 23 523 137 HOH HOH . 
E 5 HOH A 24 524 77 HOH HOH . 
E 5 HOH A 25 525 254 HOH HOH . 
E 5 HOH A 26 526 188 HOH HOH . 
E 5 HOH A 27 527 120 HOH HOH . 
E 5 HOH A 28 528 135 HOH HOH . 
E 5 HOH A 29 529 10 HOH HOH . 
E 5 HOH A 30 530 124 HOH HOH . 
E 5 HOH A 31 531 194 HOH HOH . 
E 5 HOH A 32 532 158 HOH HOH . 
E 5 HOH A 33 533 53 HOH HOH . 
E 5 HOH A 34 534 167 HOH HOH . 
E 5 HOH A 35 535 245 HOH HOH . 
E 5 HOH A 36 536 41 HOH HOH . 
E 5 HOH A 37 537 25 HOH HOH . 
E 5 HOH A 38 538 110 HOH HOH . 
E 5 HOH A 39 539 18 HOH HOH . 
E 5 HOH A 40 540 86 HOH HOH . 
E 5 HOH A 41 541 43 HOH HOH . 
E 5 HOH A 42 542 93 HOH HOH . 
E 5 HOH A 43 543 67 HOH HOH . 
E 5 HOH A 44 544 15 HOH HOH . 
E 5 HOH A 45 545 106 HOH HOH . 
E 5 HOH A 46 546 32 HOH HOH . 
E 5 HOH A 47 547 26 HOH HOH . 
E 5 HOH A 48 548 101 HOH HOH . 
E 5 HOH A 49 549 62 HOH HOH . 
E 5 HOH A 50 550 138 HOH HOH . 
E 5 HOH A 51 551 61 HOH HOH . 
E 5 HOH A 52 552 103 HOH HOH . 
E 5 HOH A 53 553 7 HOH HOH . 
E 5 HOH A 54 554 74 HOH HOH . 
E 5 HOH A 55 555 121 HOH HOH . 
E 5 HOH A 56 556 40 HOH HOH . 
E 5 HOH A 57 557 44 HOH HOH . 
E 5 HOH A 58 558 11 HOH HOH . 
E 5 HOH A 59 559 84 HOH HOH . 
E 5 HOH A 60 560 128 HOH HOH . 
E 5 HOH A 61 561 98 HOH HOH . 
E 5 HOH A 62 562 3 HOH HOH . 
E 5 HOH A 63 563 45 HOH HOH . 
E 5 HOH A 64 564 49 HOH HOH . 
E 5 HOH A 65 565 152 HOH HOH . 
E 5 HOH A 66 566 96 HOH HOH . 
E 5 HOH A 67 567 37 HOH HOH . 
E 5 HOH A 68 568 159 HOH HOH . 
E 5 HOH A 69 569 1 HOH HOH . 
E 5 HOH A 70 570 60 HOH HOH . 
E 5 HOH A 71 571 48 HOH HOH . 
E 5 HOH A 72 572 63 HOH HOH . 
E 5 HOH A 73 573 95 HOH HOH . 
E 5 HOH A 74 574 202 HOH HOH . 
E 5 HOH A 75 575 224 HOH HOH . 
E 5 HOH A 76 576 225 HOH HOH . 
E 5 HOH A 77 577 220 HOH HOH . 
E 5 HOH A 78 578 100 HOH HOH . 
E 5 HOH A 79 579 6 HOH HOH . 
E 5 HOH A 80 580 28 HOH HOH . 
E 5 HOH A 81 581 56 HOH HOH . 
E 5 HOH A 82 582 105 HOH HOH . 
E 5 HOH A 83 583 24 HOH HOH . 
E 5 HOH A 84 584 239 HOH HOH . 
E 5 HOH A 85 585 115 HOH HOH . 
E 5 HOH A 86 586 55 HOH HOH . 
E 5 HOH A 87 587 178 HOH HOH . 
E 5 HOH A 88 588 51 HOH HOH . 
E 5 HOH A 89 589 129 HOH HOH . 
E 5 HOH A 90 590 71 HOH HOH . 
E 5 HOH A 91 591 232 HOH HOH . 
E 5 HOH A 92 592 2 HOH HOH . 
E 5 HOH A 93 593 36 HOH HOH . 
E 5 HOH A 94 594 27 HOH HOH . 
E 5 HOH A 95 595 68 HOH HOH . 
E 5 HOH A 96 596 126 HOH HOH . 
E 5 HOH A 97 597 142 HOH HOH . 
E 5 HOH A 98 598 156 HOH HOH . 
E 5 HOH A 99 599 79 HOH HOH . 
E 5 HOH A 100 600 29 HOH HOH . 
E 5 HOH A 101 601 52 HOH HOH . 
E 5 HOH A 102 602 186 HOH HOH . 
E 5 HOH A 103 603 151 HOH HOH . 
E 5 HOH A 104 604 148 HOH HOH . 
E 5 HOH A 105 605 4 HOH HOH . 
E 5 HOH A 106 606 123 HOH HOH . 
E 5 HOH A 107 607 181 HOH HOH . 
E 5 HOH A 108 608 72 HOH HOH . 
E 5 HOH A 109 609 183 HOH HOH . 
E 5 HOH A 110 610 88 HOH HOH . 
E 5 HOH A 111 611 230 HOH HOH . 
E 5 HOH A 112 612 146 HOH HOH . 
E 5 HOH A 113 613 99 HOH HOH . 
E 5 HOH A 114 614 47 HOH HOH . 
E 5 HOH A 115 615 193 HOH HOH . 
E 5 HOH A 116 616 199 HOH HOH . 
E 5 HOH A 117 617 23 HOH HOH . 
E 5 HOH A 118 618 153 HOH HOH . 
E 5 HOH A 119 619 116 HOH HOH . 
E 5 HOH A 120 620 80 HOH HOH . 
E 5 HOH A 121 621 174 HOH HOH . 
E 5 HOH A 122 622 39 HOH HOH . 
E 5 HOH A 123 623 30 HOH HOH . 
E 5 HOH A 124 624 34 HOH HOH . 
E 5 HOH A 125 625 246 HOH HOH . 
E 5 HOH A 126 626 113 HOH HOH . 
E 5 HOH A 127 627 109 HOH HOH . 
E 5 HOH A 128 628 102 HOH HOH . 
E 5 HOH A 129 629 21 HOH HOH . 
E 5 HOH A 130 630 83 HOH HOH . 
E 5 HOH A 131 631 17 HOH HOH . 
E 5 HOH A 132 632 206 HOH HOH . 
E 5 HOH A 133 633 69 HOH HOH . 
E 5 HOH A 134 634 150 HOH HOH . 
E 5 HOH A 135 635 251 HOH HOH . 
E 5 HOH A 136 636 117 HOH HOH . 
E 5 HOH A 137 637 5 HOH HOH . 
E 5 HOH A 138 638 75 HOH HOH . 
E 5 HOH A 139 639 97 HOH HOH . 
E 5 HOH A 140 640 19 HOH HOH . 
E 5 HOH A 141 641 195 HOH HOH . 
E 5 HOH A 142 642 22 HOH HOH . 
E 5 HOH A 143 643 155 HOH HOH . 
E 5 HOH A 144 644 238 HOH HOH . 
E 5 HOH A 145 645 157 HOH HOH . 
E 5 HOH A 146 646 243 HOH HOH . 
E 5 HOH A 147 647 240 HOH HOH . 
E 5 HOH A 148 648 255 HOH HOH . 
E 5 HOH A 149 649 233 HOH HOH . 
E 5 HOH A 150 650 132 HOH HOH . 
E 5 HOH A 151 651 236 HOH HOH . 
E 5 HOH A 152 652 66 HOH HOH . 
E 5 HOH A 153 653 134 HOH HOH . 
E 5 HOH A 154 654 171 HOH HOH . 
E 5 HOH A 155 655 196 HOH HOH . 
E 5 HOH A 156 656 164 HOH HOH . 
E 5 HOH A 157 657 38 HOH HOH . 
E 5 HOH A 158 658 58 HOH HOH . 
E 5 HOH A 159 659 218 HOH HOH . 
E 5 HOH A 160 660 244 HOH HOH . 
E 5 HOH A 161 661 87 HOH HOH . 
E 5 HOH A 162 662 175 HOH HOH . 
E 5 HOH A 163 663 203 HOH HOH . 
E 5 HOH A 164 664 231 HOH HOH . 
E 5 HOH A 165 665 94 HOH HOH . 
E 5 HOH A 166 666 125 HOH HOH . 
E 5 HOH A 167 667 13 HOH HOH . 
E 5 HOH A 168 668 14 HOH HOH . 
E 5 HOH A 169 669 107 HOH HOH . 
E 5 HOH A 170 670 33 HOH HOH . 
E 5 HOH A 171 671 162 HOH HOH . 
E 5 HOH A 172 672 190 HOH HOH . 
E 5 HOH A 173 673 81 HOH HOH . 
E 5 HOH A 174 674 253 HOH HOH . 
E 5 HOH A 175 675 201 HOH HOH . 
E 5 HOH A 176 676 57 HOH HOH . 
E 5 HOH A 177 677 241 HOH HOH . 
E 5 HOH A 178 678 182 HOH HOH . 
E 5 HOH A 179 679 204 HOH HOH . 
E 5 HOH A 180 680 228 HOH HOH . 
E 5 HOH A 181 681 249 HOH HOH . 
E 5 HOH A 182 682 242 HOH HOH . 
E 5 HOH A 183 683 226 HOH HOH . 
E 5 HOH A 184 684 197 HOH HOH . 
E 5 HOH A 185 685 227 HOH HOH . 
E 5 HOH A 186 686 54 HOH HOH . 
E 5 HOH A 187 687 180 HOH HOH . 
E 5 HOH A 188 688 163 HOH HOH . 
E 5 HOH A 189 689 91 HOH HOH . 
E 5 HOH A 190 690 176 HOH HOH . 
E 5 HOH A 191 691 219 HOH HOH . 
E 5 HOH A 192 692 248 HOH HOH . 
E 5 HOH A 193 693 250 HOH HOH . 
E 5 HOH A 194 694 192 HOH HOH . 
E 5 HOH A 195 695 42 HOH HOH . 
E 5 HOH A 196 696 213 HOH HOH . 
E 5 HOH A 197 697 252 HOH HOH . 
E 5 HOH A 198 698 179 HOH HOH . 
E 5 HOH A 199 699 247 HOH HOH . 
E 5 HOH A 200 700 215 HOH HOH . 
E 5 HOH A 201 701 154 HOH HOH . 
E 5 HOH A 202 702 140 HOH HOH . 
E 5 HOH A 203 703 122 HOH HOH . 
E 5 HOH A 204 704 222 HOH HOH . 
E 5 HOH A 205 705 200 HOH HOH . 
E 5 HOH A 206 706 189 HOH HOH . 
E 5 HOH A 207 707 90 HOH HOH . 
E 5 HOH A 208 708 177 HOH HOH . 
E 5 HOH A 209 709 209 HOH HOH . 
E 5 HOH A 210 710 212 HOH HOH . 
E 5 HOH A 211 711 214 HOH HOH . 
E 5 HOH A 212 712 149 HOH HOH . 
E 5 HOH A 213 713 221 HOH HOH . 
E 5 HOH A 214 714 89 HOH HOH . 
E 5 HOH A 215 715 229 HOH HOH . 
E 5 HOH A 216 716 76 HOH HOH . 
E 5 HOH A 217 717 73 HOH HOH . 
E 5 HOH A 218 718 118 HOH HOH . 
E 5 HOH A 219 719 210 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -48.146 
_atom_site.Cartn_y               18.031 
_atom_site.Cartn_z               106.525 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.09 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#