data_5XEZ # _model_server_result.job_id Dq13VZMbSUQQ-eho0LG7Iw _model_server_result.datetime_utc '2024-11-22 01:58:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xez # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1208}' # _entry.id 5XEZ # _exptl.entry_id 5XEZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 573.666 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(4-cyclohexylphenyl){[3-(methylsulfonyl)phenyl]carbamoyl}amino]methyl}-N-(1H-tetrazol-5-yl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 5XEZ _cell.length_a 72.61 _cell.length_b 245.33 _cell.length_c 96.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XEZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,L,M 1 1 B,E,F,J,K,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 P N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 E 1 NAG A 2059 NAG 4 n G NAG 2 E 2 NAG A 2060 NAG 4 n H NAG 1 F 1 NAG A 2074 NAG 4 n H NAG 2 F 2 NAG A 2075 NAG 4 n I NAG 1 G 1 NAG A 2078 NAG 4 n I NAG 2 G 2 NAG A 2079 NAG 4 n J NAG 1 I 1 NAG B 2046 NAG 4 n J NAG 2 I 2 NAG B 2047 NAG 4 n K NAG 1 J 1 NAG B 2078 NAG 4 n K NAG 2 J 2 NAG B 2079 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 43 1_555 A SG CYS 44 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 35 A CYS 58 1_555 A SG CYS 77 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf3 A SG CYS 58 A CYS 81 1_555 A SG CYS 98 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 201 A CYS 224 1_555 A SG CYS 428 A CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 20 B CYS 43 1_555 B SG CYS 44 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 35 B CYS 58 1_555 B SG CYS 77 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf7 B SG CYS 58 B CYS 81 1_555 B SG CYS 98 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 201 B CYS 224 1_555 B SG CYS 428 B CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 C SG CYS 22 C CYS 236 1_555 C SG CYS 96 C CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 C SG CYS 155 C CYS 369 1_555 C SG CYS 211 C CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 C SG CYS 231 C CYS 445 1_555 D SG CYS 214 D CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 D SG CYS 23 D CYS 23 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf13 D SG CYS 134 D CYS 134 1_555 D SG CYS 194 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf14 E SG CYS 22 H CYS 236 1_555 E SG CYS 96 H CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf15 E SG CYS 155 H CYS 369 1_555 E SG CYS 211 H CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 E SG CYS 231 H CYS 445 1_555 F SG CYS 214 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 F SG CYS 23 L CYS 23 1_555 F SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf18 F SG CYS 134 L CYS 134 1_555 F SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A ND2 ASN 23 A ASN 46 1_555 L C1 NAG . A NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 36 A ASN 59 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 51 A ASN 74 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 55 A ASN 78 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B ND2 ASN 23 B ASN 46 1_555 J C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 B ND2 ASN 36 B ASN 59 1_555 N C1 NAG . B NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 B ND2 ASN 51 B ASN 74 1_555 O C1 NAG . B NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale8 B ND2 ASN 55 B ASN 78 1_555 K C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale10 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 I O4 NAG . G NAG 1 1_555 I C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 J O4 NAG . I NAG 1 1_555 J C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale13 K O4 NAG . J NAG 1 1_555 K C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? # _chem_comp.formula 'C29 H31 N7 O4 S' _chem_comp.formula_weight 573.666 _chem_comp.id 97V _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(4-cyclohexylphenyl){[3-(methylsulfonyl)phenyl]carbamoyl}amino]methyl}-N-(1H-tetrazol-5-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBJ CBK 97V sing 1 n n CBJ CBI 97V sing 2 n n CBK CBL 97V sing 3 n n CBI CBH 97V sing 4 n n CBL CBG 97V sing 5 n n CBH CBG 97V sing 6 n n CBG CBF 97V sing 7 n n CBF CBM 97V doub 8 n y CBF CBE 97V sing 9 n y CBM CBN 97V sing 10 n y CBE CBD 97V doub 11 n y CBN CBC 97V doub 12 n y CBD CBC 97V sing 13 n y CBC NAM 97V sing 14 n n CAH CAG 97V doub 15 n y CAH CAI 97V sing 16 n y NAJ CAI 97V sing 17 n n NAJ CAK 97V sing 18 n n NAM CAK 97V sing 19 n n NAM CAN 97V sing 20 n n CAG CAF 97V sing 21 n y CAI CBO 97V doub 22 n y CAK OAL 97V doub 23 n n CAN CAO 97V sing 24 n n CAP CAO 97V doub 25 n y CAP CAQ 97V sing 26 n y CAF CAE 97V doub 27 n y CAO CBB 97V sing 28 n y CAQ CAR 97V doub 29 n y CBO CAE 97V sing 30 n y CAE SAB 97V sing 31 n n CBB CBA 97V doub 32 n y CAR CBA 97V sing 33 n y CAR CAS 97V sing 34 n n NAU CAS 97V sing 35 n n NAU CAV 97V sing 36 n n NAZ CAV 97V doub 37 n y NAZ NAY 97V sing 38 n y CAS OAT 97V doub 39 n n SAB CAA 97V sing 40 n n SAB OAC 97V doub 41 n n SAB OAD 97V doub 42 n n CAV NAW 97V sing 43 n y NAY NAX 97V doub 44 n y NAW NAX 97V sing 45 n y CAA H1 97V sing 46 n n CAA H2 97V sing 47 n n CAA H3 97V sing 48 n n CAF H4 97V sing 49 n n CAG H5 97V sing 50 n n CAH H6 97V sing 51 n n CAN H7 97V sing 52 n n CAN H8 97V sing 53 n n CAP H9 97V sing 54 n n CAQ H10 97V sing 55 n n NAJ H11 97V sing 56 n n NAU H12 97V sing 57 n n NAW H13 97V sing 58 n n CBA H14 97V sing 59 n n CBB H15 97V sing 60 n n CBD H16 97V sing 61 n n CBE H17 97V sing 62 n n CBG H18 97V sing 63 n n CBH H19 97V sing 64 n n CBH H20 97V sing 65 n n CBI H21 97V sing 66 n n CBI H22 97V sing 67 n n CBJ H23 97V sing 68 n n CBJ H24 97V sing 69 n n CBK H25 97V sing 70 n n CBK H26 97V sing 71 n n CBL H27 97V sing 72 n n CBL H28 97V sing 73 n n CBM H29 97V sing 74 n n CBN H30 97V sing 75 n n CBO H31 97V sing 76 n n # _atom_sites.entry_id 5XEZ _atom_sites.fract_transf_matrix[1][1] 0.013772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 5 NAG A 1 1201 2046 NAG NAG . M 6 97V A 1 1208 3001 97V 97V . N 5 NAG B 1 1203 2059 NAG NAG . O 5 NAG B 1 1204 2074 NAG NAG . P 6 97V B 1 1207 3001 97V 97V . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 97V . . . M 6 41.452 16.782 -23.185 1 141.23 ? CAA 97V 1208 A 1 HETATM 2 C CAE 97V . . . M 6 41.53 16.996 -20.322 1 136.38 ? CAE 97V 1208 A 1 HETATM 3 C CAF 97V . . . M 6 40.477 16.891 -19.408 1 134.71 ? CAF 97V 1208 A 1 HETATM 4 C CAG 97V . . . M 6 40.651 16.134 -18.242 1 131.91 ? CAG 97V 1208 A 1 HETATM 5 C CAH 97V . . . M 6 41.867 15.484 -17.986 1 127.97 ? CAH 97V 1208 A 1 HETATM 6 C CAI 97V . . . M 6 42.922 15.597 -18.905 1 125.78 ? CAI 97V 1208 A 1 HETATM 7 C CAK 97V . . . M 6 44.259 13.683 -18.68 1 112.02 ? CAK 97V 1208 A 1 HETATM 8 C CAN 97V . . . M 6 46.778 13.854 -18.927 1 105.85 ? CAN 97V 1208 A 1 HETATM 9 C CAO 97V . . . M 6 47.313 14.668 -17.904 1 107.12 ? CAO 97V 1208 A 1 HETATM 10 C CAP 97V . . . M 6 47.581 14.15 -16.637 1 107.93 ? CAP 97V 1208 A 1 HETATM 11 C CAQ 97V . . . M 6 48.135 14.94 -15.637 1 107.95 ? CAQ 97V 1208 A 1 HETATM 12 C CAR 97V . . . M 6 48.447 16.274 -15.881 1 107.73 ? CAR 97V 1208 A 1 HETATM 13 C CAS 97V . . . M 6 49.004 17.034 -14.853 1 108.14 ? CAS 97V 1208 A 1 HETATM 14 C CAV 97V . . . M 6 48.708 17.798 -12.675 1 109.66 ? CAV 97V 1208 A 1 HETATM 15 N NAJ 97V . . . M 6 44.136 15.032 -18.813 1 118.69 ? NAJ 97V 1208 A 1 HETATM 16 N NAM 97V . . . M 6 45.516 13.113 -18.636 1 104.48 ? NAM 97V 1208 A 1 HETATM 17 N NAU 97V . . . M 6 48.247 17.121 -13.73 1 108.92 ? NAU 97V 1208 A 1 HETATM 18 N NAW 97V . . . M 6 48.596 17.37 -11.424 1 108.14 ? NAW 97V 1208 A 1 HETATM 19 N NAX 97V . . . M 6 49.152 18.306 -10.645 1 107.62 ? NAX 97V 1208 A 1 HETATM 20 N NAY 97V . . . M 6 49.591 19.3 -11.434 1 109.85 ? NAY 97V 1208 A 1 HETATM 21 N NAZ 97V . . . M 6 49.309 18.982 -12.703 1 111.15 ? NAZ 97V 1208 A 1 HETATM 22 O OAC 97V . . . M 6 42.61 18.865 -21.91 1 140.68 ? OAC 97V 1208 A 1 HETATM 23 O OAD 97V . . . M 6 40.112 18.722 -21.836 1 140.97 ? OAD 97V 1208 A 1 HETATM 24 O OAL 97V . . . M 6 43.25 12.984 -18.526 1 111.67 ? OAL 97V 1208 A 1 HETATM 25 O OAT 97V . . . M 6 50.121 17.536 -14.989 1 104.67 ? OAT 97V 1208 A 1 HETATM 26 S SAB 97V . . . M 6 41.413 17.915 -21.81 1 141.39 ? SAB 97V 1208 A 1 HETATM 27 C CBA 97V . . . M 6 48.208 16.806 -17.149 1 106.4 ? CBA 97V 1208 A 1 HETATM 28 C CBB 97V . . . M 6 47.649 16.008 -18.155 1 106.49 ? CBB 97V 1208 A 1 HETATM 29 C CBC 97V . . . M 6 45.559 11.763 -18.57 1 98.11 ? CBC 97V 1208 A 1 HETATM 30 C CBD 97V . . . M 6 46.018 11.025 -17.472 1 95.62 ? CBD 97V 1208 A 1 HETATM 31 C CBE 97V . . . M 6 46.04 9.624 -17.507 1 92.79 ? CBE 97V 1208 A 1 HETATM 32 C CBF 97V . . . M 6 45.609 8.908 -18.632 1 89.73 ? CBF 97V 1208 A 1 HETATM 33 C CBG 97V . . . M 6 45.65 7.481 -18.586 1 86.37 ? CBG 97V 1208 A 1 HETATM 34 C CBH 97V . . . M 6 44.812 6.789 -19.716 1 84.98 ? CBH 97V 1208 A 1 HETATM 35 C CBI 97V . . . M 6 44.862 5.271 -19.522 1 84.74 ? CBI 97V 1208 A 1 HETATM 36 C CBJ 97V . . . M 6 46.334 4.88 -19.687 1 84.03 ? CBJ 97V 1208 A 1 HETATM 37 C CBK 97V . . . M 6 47.165 5.483 -18.56 1 83.99 ? CBK 97V 1208 A 1 HETATM 38 C CBL 97V . . . M 6 47.109 7.003 -18.644 1 85.06 ? CBL 97V 1208 A 1 HETATM 39 C CBM 97V . . . M 6 45.157 9.66 -19.733 1 92.32 ? CBM 97V 1208 A 1 HETATM 40 C CBN 97V . . . M 6 45.143 11.051 -19.7 1 94.95 ? CBN 97V 1208 A 1 HETATM 41 C CBO 97V . . . M 6 42.731 16.348 -20.063 1 131.36 ? CBO 97V 1208 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #