data_5XFI
#
_model_server_result.job_id            cj8JSTzG154Fv0mbYYmC5w 
_model_server_result.datetime_utc      '2024-11-22 09:13:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xfi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1009}' 
#
_entry.id    5XFI 
#
_exptl.entry_id    5XFI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XFI 
_cell.length_a            37.985 
_cell.length_b            37.985 
_cell.length_c            199.911 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XFI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 
5 ? 2 6 5 GAL NAG C1 O1 . O4 HO4 . sing 
6 ? 2 7 3 MAN BMA C1 O1 . O6 HO6 . sing 
7 ? 2 8 7 NAG MAN C1 O1 . O2 HO2 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG A 1001 NAG 
2 n C NAG 2 C 2 NAG A 1002 NAG 
2 n C BMA 3 C 3 BMA A 1003 BMA 
2 n C MAN 4 C 4 MAN A 1004 MAN 
2 n C NAG 5 C 5 NAG A 1005 NAG 
2 n C GAL 6 C 6 GAL A 1006 GAL 
2 n C MAN 7 C 7 MAN A 1007 MAN 
2 n C NAG 8 C 8 NAG A 1008 NAG 
2 n D NAG 1 D 1 NAG B 1001 NAG 
2 n D NAG 2 D 2 NAG B 1002 NAG 
2 n D BMA 3 D 3 BMA B 1003 BMA 
2 n D MAN 4 D 4 MAN B 1004 MAN 
2 n D NAG 5 D 5 NAG B 1005 NAG 
2 n D GAL 6 D 6 GAL B 1006 GAL 
2 n D MAN 7 D 7 MAN B 1007 MAN 
2 n D NAG 8 D 8 NAG B 1008 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale4 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale5 C O2 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale6 C O4 NAG . C NAG 5 1_555 C C1 GAL . C GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? 
covale ? covale7 C O2 MAN . C MAN 7 1_555 C C1 NAG . C NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale9 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale10 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale11 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale12 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale13 D O4 NAG . D NAG 5 1_555 D C1 GAL . D GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale14 D O2 MAN . D MAN 7 1_555 D C1 NAG . D NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 403 n n 
S O2 SO4 doub 404 n n 
S O3 SO4 sing 405 n n 
S O4 SO4 sing 406 n n 
#
_atom_sites.entry_id                     5XFI 
_atom_sites.fract_transf_matrix[1][1]    0.026326 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 1009 1 SO4 SO4 . 
F 3 SO4 A 1 1010 4 SO4 SO4 . 
G 4 EDO A 1 1011 101 EDO EDO . 
H 5 BEZ A 1 1012 201 BEZ BEZ . 
I 3 SO4 B 1 1009 2 SO4 SO4 . 
J 3 SO4 B 1 1010 3 SO4 SO4 . 
K 4 EDO B 1 1011 102 EDO EDO . 
L 5 BEZ B 1 1012 202 BEZ BEZ . 
M 6 HOH A 1 1101 107 HOH HOH . 
M 6 HOH A 2 1102 29 HOH HOH . 
M 6 HOH A 3 1103 33 HOH HOH . 
M 6 HOH A 4 1104 38 HOH HOH . 
M 6 HOH A 5 1105 22 HOH HOH . 
M 6 HOH A 6 1106 116 HOH HOH . 
M 6 HOH A 7 1107 86 HOH HOH . 
M 6 HOH A 8 1108 80 HOH HOH . 
M 6 HOH A 9 1109 101 HOH HOH . 
M 6 HOH A 10 1110 19 HOH HOH . 
M 6 HOH A 11 1111 1 HOH HOH . 
M 6 HOH A 12 1112 83 HOH HOH . 
M 6 HOH A 13 1113 37 HOH HOH . 
M 6 HOH A 14 1114 81 HOH HOH . 
M 6 HOH A 15 1115 34 HOH HOH . 
M 6 HOH A 16 1116 35 HOH HOH . 
M 6 HOH A 17 1117 23 HOH HOH . 
M 6 HOH A 18 1118 39 HOH HOH . 
M 6 HOH A 19 1119 20 HOH HOH . 
M 6 HOH A 20 1120 36 HOH HOH . 
M 6 HOH A 21 1121 48 HOH HOH . 
M 6 HOH A 22 1122 42 HOH HOH . 
M 6 HOH A 23 1123 26 HOH HOH . 
M 6 HOH A 24 1124 88 HOH HOH . 
M 6 HOH A 25 1125 52 HOH HOH . 
M 6 HOH A 26 1126 32 HOH HOH . 
M 6 HOH A 27 1127 25 HOH HOH . 
M 6 HOH A 28 1128 41 HOH HOH . 
M 6 HOH A 29 1129 93 HOH HOH . 
M 6 HOH A 30 1130 40 HOH HOH . 
M 6 HOH A 31 1131 128 HOH HOH . 
M 6 HOH A 32 1132 113 HOH HOH . 
M 6 HOH A 33 1133 16 HOH HOH . 
M 6 HOH A 34 1134 21 HOH HOH . 
M 6 HOH A 35 1135 11 HOH HOH . 
M 6 HOH A 36 1136 18 HOH HOH . 
M 6 HOH A 37 1137 8 HOH HOH . 
M 6 HOH A 38 1138 10 HOH HOH . 
M 6 HOH A 39 1139 24 HOH HOH . 
M 6 HOH A 40 1140 15 HOH HOH . 
M 6 HOH A 41 1141 127 HOH HOH . 
M 6 HOH A 42 1142 102 HOH HOH . 
M 6 HOH A 43 1143 9 HOH HOH . 
M 6 HOH A 44 1144 87 HOH HOH . 
M 6 HOH A 45 1145 78 HOH HOH . 
M 6 HOH A 46 1146 89 HOH HOH . 
M 6 HOH A 47 1147 106 HOH HOH . 
M 6 HOH A 48 1148 125 HOH HOH . 
M 6 HOH A 49 1149 74 HOH HOH . 
M 6 HOH A 50 1150 27 HOH HOH . 
M 6 HOH A 51 1151 31 HOH HOH . 
M 6 HOH A 52 1152 123 HOH HOH . 
M 6 HOH A 53 1153 126 HOH HOH . 
M 6 HOH A 54 1154 44 HOH HOH . 
M 6 HOH A 55 1155 73 HOH HOH . 
M 6 HOH A 56 1156 122 HOH HOH . 
M 6 HOH A 57 1157 124 HOH HOH . 
M 6 HOH A 58 1158 104 HOH HOH . 
M 6 HOH A 59 1159 28 HOH HOH . 
M 6 HOH A 60 1160 84 HOH HOH . 
M 6 HOH A 61 1161 79 HOH HOH . 
M 6 HOH A 62 1162 75 HOH HOH . 
M 6 HOH A 63 1163 85 HOH HOH . 
M 6 HOH A 64 1164 43 HOH HOH . 
M 6 HOH A 65 1165 108 HOH HOH . 
M 6 HOH A 66 1166 50 HOH HOH . 
N 6 HOH B 1 1101 110 HOH HOH . 
N 6 HOH B 2 1102 71 HOH HOH . 
N 6 HOH B 3 1103 63 HOH HOH . 
N 6 HOH B 4 1104 95 HOH HOH . 
N 6 HOH B 5 1105 100 HOH HOH . 
N 6 HOH B 6 1106 14 HOH HOH . 
N 6 HOH B 7 1107 13 HOH HOH . 
N 6 HOH B 8 1108 72 HOH HOH . 
N 6 HOH B 9 1109 119 HOH HOH . 
N 6 HOH B 10 1110 55 HOH HOH . 
N 6 HOH B 11 1111 59 HOH HOH . 
N 6 HOH B 12 1112 57 HOH HOH . 
N 6 HOH B 13 1113 94 HOH HOH . 
N 6 HOH B 14 1114 129 HOH HOH . 
N 6 HOH B 15 1115 112 HOH HOH . 
N 6 HOH B 16 1116 60 HOH HOH . 
N 6 HOH B 17 1117 53 HOH HOH . 
N 6 HOH B 18 1118 120 HOH HOH . 
N 6 HOH B 19 1119 58 HOH HOH . 
N 6 HOH B 20 1120 115 HOH HOH . 
N 6 HOH B 21 1121 54 HOH HOH . 
N 6 HOH B 22 1122 82 HOH HOH . 
N 6 HOH B 23 1123 3 HOH HOH . 
N 6 HOH B 24 1124 12 HOH HOH . 
N 6 HOH B 25 1125 103 HOH HOH . 
N 6 HOH B 26 1126 5 HOH HOH . 
N 6 HOH B 27 1127 64 HOH HOH . 
N 6 HOH B 28 1128 51 HOH HOH . 
N 6 HOH B 29 1129 65 HOH HOH . 
N 6 HOH B 30 1130 90 HOH HOH . 
N 6 HOH B 31 1131 117 HOH HOH . 
N 6 HOH B 32 1132 131 HOH HOH . 
N 6 HOH B 33 1133 45 HOH HOH . 
N 6 HOH B 34 1134 7 HOH HOH . 
N 6 HOH B 35 1135 105 HOH HOH . 
N 6 HOH B 36 1136 68 HOH HOH . 
N 6 HOH B 37 1137 70 HOH HOH . 
N 6 HOH B 38 1138 61 HOH HOH . 
N 6 HOH B 39 1139 62 HOH HOH . 
N 6 HOH B 40 1140 30 HOH HOH . 
N 6 HOH B 41 1141 118 HOH HOH . 
N 6 HOH B 42 1142 4 HOH HOH . 
N 6 HOH B 43 1143 56 HOH HOH . 
N 6 HOH B 44 1144 130 HOH HOH . 
N 6 HOH B 45 1145 98 HOH HOH . 
N 6 HOH B 46 1146 92 HOH HOH . 
N 6 HOH B 47 1147 121 HOH HOH . 
N 6 HOH B 48 1148 96 HOH HOH . 
N 6 HOH B 49 1149 76 HOH HOH . 
N 6 HOH B 50 1150 111 HOH HOH . 
N 6 HOH B 51 1151 114 HOH HOH . 
N 6 HOH B 52 1152 6 HOH HOH . 
N 6 HOH B 53 1153 91 HOH HOH . 
N 6 HOH B 54 1154 47 HOH HOH . 
N 6 HOH B 55 1155 67 HOH HOH . 
N 6 HOH B 56 1156 49 HOH HOH . 
N 6 HOH B 57 1157 2 HOH HOH . 
N 6 HOH B 58 1158 77 HOH HOH . 
N 6 HOH B 59 1159 46 HOH HOH . 
N 6 HOH B 60 1160 99 HOH HOH . 
N 6 HOH B 61 1161 69 HOH HOH . 
N 6 HOH B 62 1162 132 HOH HOH . 
N 6 HOH B 63 1163 97 HOH HOH . 
N 6 HOH B 64 1164 66 HOH HOH . 
N 6 HOH B 65 1165 109 HOH HOH . 
N 6 HOH B 66 1166 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . E 3 7.056 11.396 -18.625 1 53.47 ? S SO4 1009 A 1 
HETATM 2 O O1 SO4 . . . E 3 7.831 12.324 -19.448 1 41.08 ? O1 SO4 1009 A 1 
HETATM 3 O O2 SO4 . . . E 3 6.318 10.469 -19.487 1 61.33 ? O2 SO4 1009 A 1 
HETATM 4 O O3 SO4 . . . E 3 7.961 10.64 -17.76 1 50.5 ? O3 SO4 1009 A 1 
HETATM 5 O O4 SO4 . . . E 3 6.107 12.146 -17.808 1 53.04 ? O4 SO4 1009 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#