data_5XFI # _model_server_result.job_id vTAmROeIUT3yLp_-Ga_YlQ _model_server_result.datetime_utc '2024-11-22 09:12:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xfi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1009}' # _entry.id 5XFI # _exptl.entry_id 5XFI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XFI _cell.length_a 37.985 _cell.length_b 37.985 _cell.length_c 199.911 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 GAL NAG C1 O1 . O4 HO4 . sing 6 ? 2 7 3 MAN BMA C1 O1 . O6 HO6 . sing 7 ? 2 8 7 NAG MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1001 NAG 2 n C NAG 2 C 2 NAG A 1002 NAG 2 n C BMA 3 C 3 BMA A 1003 BMA 2 n C MAN 4 C 4 MAN A 1004 MAN 2 n C NAG 5 C 5 NAG A 1005 NAG 2 n C GAL 6 C 6 GAL A 1006 GAL 2 n C MAN 7 C 7 MAN A 1007 MAN 2 n C NAG 8 C 8 NAG A 1008 NAG 2 n D NAG 1 D 1 NAG B 1001 NAG 2 n D NAG 2 D 2 NAG B 1002 NAG 2 n D BMA 3 D 3 BMA B 1003 BMA 2 n D MAN 4 D 4 MAN B 1004 MAN 2 n D NAG 5 D 5 NAG B 1005 NAG 2 n D GAL 6 D 6 GAL B 1006 GAL 2 n D MAN 7 D 7 MAN B 1007 MAN 2 n D NAG 8 D 8 NAG B 1008 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale4 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 C O2 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale6 C O4 NAG . C NAG 5 1_555 C C1 GAL . C GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale7 C O2 MAN . C MAN 7 1_555 C C1 NAG . C NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale11 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale12 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale13 D O4 NAG . D NAG 5 1_555 D C1 GAL . D GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale14 D O2 MAN . D MAN 7 1_555 D C1 NAG . D NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 403 n n S O2 SO4 doub 404 n n S O3 SO4 sing 405 n n S O4 SO4 sing 406 n n # _atom_sites.entry_id 5XFI _atom_sites.fract_transf_matrix[1][1] 0.026326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 1009 1 SO4 SO4 . F 3 SO4 A 1 1010 4 SO4 SO4 . G 4 EDO A 1 1011 101 EDO EDO . H 5 BEZ A 1 1012 201 BEZ BEZ . I 3 SO4 B 1 1009 2 SO4 SO4 . J 3 SO4 B 1 1010 3 SO4 SO4 . K 4 EDO B 1 1011 102 EDO EDO . L 5 BEZ B 1 1012 202 BEZ BEZ . M 6 HOH A 1 1101 107 HOH HOH . M 6 HOH A 2 1102 29 HOH HOH . M 6 HOH A 3 1103 33 HOH HOH . M 6 HOH A 4 1104 38 HOH HOH . M 6 HOH A 5 1105 22 HOH HOH . M 6 HOH A 6 1106 116 HOH HOH . M 6 HOH A 7 1107 86 HOH HOH . M 6 HOH A 8 1108 80 HOH HOH . M 6 HOH A 9 1109 101 HOH HOH . M 6 HOH A 10 1110 19 HOH HOH . M 6 HOH A 11 1111 1 HOH HOH . M 6 HOH A 12 1112 83 HOH HOH . M 6 HOH A 13 1113 37 HOH HOH . M 6 HOH A 14 1114 81 HOH HOH . M 6 HOH A 15 1115 34 HOH HOH . M 6 HOH A 16 1116 35 HOH HOH . M 6 HOH A 17 1117 23 HOH HOH . M 6 HOH A 18 1118 39 HOH HOH . M 6 HOH A 19 1119 20 HOH HOH . M 6 HOH A 20 1120 36 HOH HOH . M 6 HOH A 21 1121 48 HOH HOH . M 6 HOH A 22 1122 42 HOH HOH . M 6 HOH A 23 1123 26 HOH HOH . M 6 HOH A 24 1124 88 HOH HOH . M 6 HOH A 25 1125 52 HOH HOH . M 6 HOH A 26 1126 32 HOH HOH . M 6 HOH A 27 1127 25 HOH HOH . M 6 HOH A 28 1128 41 HOH HOH . M 6 HOH A 29 1129 93 HOH HOH . M 6 HOH A 30 1130 40 HOH HOH . M 6 HOH A 31 1131 128 HOH HOH . M 6 HOH A 32 1132 113 HOH HOH . M 6 HOH A 33 1133 16 HOH HOH . M 6 HOH A 34 1134 21 HOH HOH . M 6 HOH A 35 1135 11 HOH HOH . M 6 HOH A 36 1136 18 HOH HOH . M 6 HOH A 37 1137 8 HOH HOH . M 6 HOH A 38 1138 10 HOH HOH . M 6 HOH A 39 1139 24 HOH HOH . M 6 HOH A 40 1140 15 HOH HOH . M 6 HOH A 41 1141 127 HOH HOH . M 6 HOH A 42 1142 102 HOH HOH . M 6 HOH A 43 1143 9 HOH HOH . M 6 HOH A 44 1144 87 HOH HOH . M 6 HOH A 45 1145 78 HOH HOH . M 6 HOH A 46 1146 89 HOH HOH . M 6 HOH A 47 1147 106 HOH HOH . M 6 HOH A 48 1148 125 HOH HOH . M 6 HOH A 49 1149 74 HOH HOH . M 6 HOH A 50 1150 27 HOH HOH . M 6 HOH A 51 1151 31 HOH HOH . M 6 HOH A 52 1152 123 HOH HOH . M 6 HOH A 53 1153 126 HOH HOH . M 6 HOH A 54 1154 44 HOH HOH . M 6 HOH A 55 1155 73 HOH HOH . M 6 HOH A 56 1156 122 HOH HOH . M 6 HOH A 57 1157 124 HOH HOH . M 6 HOH A 58 1158 104 HOH HOH . M 6 HOH A 59 1159 28 HOH HOH . M 6 HOH A 60 1160 84 HOH HOH . M 6 HOH A 61 1161 79 HOH HOH . M 6 HOH A 62 1162 75 HOH HOH . M 6 HOH A 63 1163 85 HOH HOH . M 6 HOH A 64 1164 43 HOH HOH . M 6 HOH A 65 1165 108 HOH HOH . M 6 HOH A 66 1166 50 HOH HOH . N 6 HOH B 1 1101 110 HOH HOH . N 6 HOH B 2 1102 71 HOH HOH . N 6 HOH B 3 1103 63 HOH HOH . N 6 HOH B 4 1104 95 HOH HOH . N 6 HOH B 5 1105 100 HOH HOH . N 6 HOH B 6 1106 14 HOH HOH . N 6 HOH B 7 1107 13 HOH HOH . N 6 HOH B 8 1108 72 HOH HOH . N 6 HOH B 9 1109 119 HOH HOH . N 6 HOH B 10 1110 55 HOH HOH . N 6 HOH B 11 1111 59 HOH HOH . N 6 HOH B 12 1112 57 HOH HOH . N 6 HOH B 13 1113 94 HOH HOH . N 6 HOH B 14 1114 129 HOH HOH . N 6 HOH B 15 1115 112 HOH HOH . N 6 HOH B 16 1116 60 HOH HOH . N 6 HOH B 17 1117 53 HOH HOH . N 6 HOH B 18 1118 120 HOH HOH . N 6 HOH B 19 1119 58 HOH HOH . N 6 HOH B 20 1120 115 HOH HOH . N 6 HOH B 21 1121 54 HOH HOH . N 6 HOH B 22 1122 82 HOH HOH . N 6 HOH B 23 1123 3 HOH HOH . N 6 HOH B 24 1124 12 HOH HOH . N 6 HOH B 25 1125 103 HOH HOH . N 6 HOH B 26 1126 5 HOH HOH . N 6 HOH B 27 1127 64 HOH HOH . N 6 HOH B 28 1128 51 HOH HOH . N 6 HOH B 29 1129 65 HOH HOH . N 6 HOH B 30 1130 90 HOH HOH . N 6 HOH B 31 1131 117 HOH HOH . N 6 HOH B 32 1132 131 HOH HOH . N 6 HOH B 33 1133 45 HOH HOH . N 6 HOH B 34 1134 7 HOH HOH . N 6 HOH B 35 1135 105 HOH HOH . N 6 HOH B 36 1136 68 HOH HOH . N 6 HOH B 37 1137 70 HOH HOH . N 6 HOH B 38 1138 61 HOH HOH . N 6 HOH B 39 1139 62 HOH HOH . N 6 HOH B 40 1140 30 HOH HOH . N 6 HOH B 41 1141 118 HOH HOH . N 6 HOH B 42 1142 4 HOH HOH . N 6 HOH B 43 1143 56 HOH HOH . N 6 HOH B 44 1144 130 HOH HOH . N 6 HOH B 45 1145 98 HOH HOH . N 6 HOH B 46 1146 92 HOH HOH . N 6 HOH B 47 1147 121 HOH HOH . N 6 HOH B 48 1148 96 HOH HOH . N 6 HOH B 49 1149 76 HOH HOH . N 6 HOH B 50 1150 111 HOH HOH . N 6 HOH B 51 1151 114 HOH HOH . N 6 HOH B 52 1152 6 HOH HOH . N 6 HOH B 53 1153 91 HOH HOH . N 6 HOH B 54 1154 47 HOH HOH . N 6 HOH B 55 1155 67 HOH HOH . N 6 HOH B 56 1156 49 HOH HOH . N 6 HOH B 57 1157 2 HOH HOH . N 6 HOH B 58 1158 77 HOH HOH . N 6 HOH B 59 1159 46 HOH HOH . N 6 HOH B 60 1160 99 HOH HOH . N 6 HOH B 61 1161 69 HOH HOH . N 6 HOH B 62 1162 132 HOH HOH . N 6 HOH B 63 1163 97 HOH HOH . N 6 HOH B 64 1164 66 HOH HOH . N 6 HOH B 65 1165 109 HOH HOH . N 6 HOH B 66 1166 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 3 -11.252 -7.098 8.614 1 53.08 ? S SO4 1009 B 1 HETATM 2 O O1 SO4 . . . I 3 -11.216 -8.094 7.538 1 52.11 ? O1 SO4 1009 B 1 HETATM 3 O O2 SO4 . . . I 3 -11.988 -5.913 8.177 1 53.94 ? O2 SO4 1009 B 1 HETATM 4 O O3 SO4 . . . I 3 -11.933 -7.68 9.775 1 44.49 ? O3 SO4 1009 B 1 HETATM 5 O O4 SO4 . . . I 3 -9.878 -6.718 8.949 1 57.13 ? O4 SO4 1009 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #