data_5XFY
#
_model_server_result.job_id            -c9CWfN7aDsjYezlyvPpOw 
_model_server_result.datetime_utc      '2024-11-07 11:33:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xfy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    5XFY 
#
_exptl.entry_id    5XFY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.24 
_cell.angle_gamma         90 
_cell.entry_id            5XFY 
_cell.length_a            114.185 
_cell.length_b            50.331 
_cell.length_c            40.979 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XFY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 174 A CYS 174 1_555 A SG CYS 210 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
disulf ? disulf2 A SG CYS 244 A CYS 244 1_555 A SG CYS 260 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5XFY 
_atom_sites.fract_transf_matrix[1][1]    0.008758 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000343 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024421 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 301 1 SO4 SO4 . 
C 2 SO4 A 1 302 2 SO4 SO4 . 
D 2 SO4 A 1 303 3 SO4 SO4 . 
E 3 GOL A 1 304 1 GOL GOL . 
F 4 HOH A 1 401 188 HOH HOH . 
F 4 HOH A 2 402 182 HOH HOH . 
F 4 HOH A 3 403 180 HOH HOH . 
F 4 HOH A 4 404 80 HOH HOH . 
F 4 HOH A 5 405 160 HOH HOH . 
F 4 HOH A 6 406 57 HOH HOH . 
F 4 HOH A 7 407 112 HOH HOH . 
F 4 HOH A 8 408 51 HOH HOH . 
F 4 HOH A 9 409 89 HOH HOH . 
F 4 HOH A 10 410 121 HOH HOH . 
F 4 HOH A 11 411 60 HOH HOH . 
F 4 HOH A 12 412 10 HOH HOH . 
F 4 HOH A 13 413 159 HOH HOH . 
F 4 HOH A 14 414 108 HOH HOH . 
F 4 HOH A 15 415 35 HOH HOH . 
F 4 HOH A 16 416 27 HOH HOH . 
F 4 HOH A 17 417 95 HOH HOH . 
F 4 HOH A 18 418 32 HOH HOH . 
F 4 HOH A 19 419 40 HOH HOH . 
F 4 HOH A 20 420 97 HOH HOH . 
F 4 HOH A 21 421 48 HOH HOH . 
F 4 HOH A 22 422 1 HOH HOH . 
F 4 HOH A 23 423 186 HOH HOH . 
F 4 HOH A 24 424 61 HOH HOH . 
F 4 HOH A 25 425 43 HOH HOH . 
F 4 HOH A 26 426 82 HOH HOH . 
F 4 HOH A 27 427 179 HOH HOH . 
F 4 HOH A 28 428 77 HOH HOH . 
F 4 HOH A 29 429 65 HOH HOH . 
F 4 HOH A 30 430 54 HOH HOH . 
F 4 HOH A 31 431 68 HOH HOH . 
F 4 HOH A 32 432 93 HOH HOH . 
F 4 HOH A 33 433 20 HOH HOH . 
F 4 HOH A 34 434 37 HOH HOH . 
F 4 HOH A 35 435 69 HOH HOH . 
F 4 HOH A 36 436 85 HOH HOH . 
F 4 HOH A 37 437 50 HOH HOH . 
F 4 HOH A 38 438 144 HOH HOH . 
F 4 HOH A 39 439 39 HOH HOH . 
F 4 HOH A 40 440 56 HOH HOH . 
F 4 HOH A 41 441 105 HOH HOH . 
F 4 HOH A 42 442 176 HOH HOH . 
F 4 HOH A 43 443 116 HOH HOH . 
F 4 HOH A 44 444 113 HOH HOH . 
F 4 HOH A 45 445 139 HOH HOH . 
F 4 HOH A 46 446 147 HOH HOH . 
F 4 HOH A 47 447 183 HOH HOH . 
F 4 HOH A 48 448 41 HOH HOH . 
F 4 HOH A 49 449 178 HOH HOH . 
F 4 HOH A 50 450 94 HOH HOH . 
F 4 HOH A 51 451 185 HOH HOH . 
F 4 HOH A 52 452 58 HOH HOH . 
F 4 HOH A 53 453 125 HOH HOH . 
F 4 HOH A 54 454 109 HOH HOH . 
F 4 HOH A 55 455 23 HOH HOH . 
F 4 HOH A 56 456 18 HOH HOH . 
F 4 HOH A 57 457 102 HOH HOH . 
F 4 HOH A 58 458 175 HOH HOH . 
F 4 HOH A 59 459 16 HOH HOH . 
F 4 HOH A 60 460 184 HOH HOH . 
F 4 HOH A 61 461 14 HOH HOH . 
F 4 HOH A 62 462 78 HOH HOH . 
F 4 HOH A 63 463 64 HOH HOH . 
F 4 HOH A 64 464 34 HOH HOH . 
F 4 HOH A 65 465 42 HOH HOH . 
F 4 HOH A 66 466 106 HOH HOH . 
F 4 HOH A 67 467 110 HOH HOH . 
F 4 HOH A 68 468 33 HOH HOH . 
F 4 HOH A 69 469 84 HOH HOH . 
F 4 HOH A 70 470 3 HOH HOH . 
F 4 HOH A 71 471 101 HOH HOH . 
F 4 HOH A 72 472 75 HOH HOH . 
F 4 HOH A 73 473 76 HOH HOH . 
F 4 HOH A 74 474 46 HOH HOH . 
F 4 HOH A 75 475 31 HOH HOH . 
F 4 HOH A 76 476 117 HOH HOH . 
F 4 HOH A 77 477 19 HOH HOH . 
F 4 HOH A 78 478 15 HOH HOH . 
F 4 HOH A 79 479 157 HOH HOH . 
F 4 HOH A 80 480 100 HOH HOH . 
F 4 HOH A 81 481 45 HOH HOH . 
F 4 HOH A 82 482 181 HOH HOH . 
F 4 HOH A 83 483 44 HOH HOH . 
F 4 HOH A 84 484 107 HOH HOH . 
F 4 HOH A 85 485 128 HOH HOH . 
F 4 HOH A 86 486 133 HOH HOH . 
F 4 HOH A 87 487 21 HOH HOH . 
F 4 HOH A 88 488 87 HOH HOH . 
F 4 HOH A 89 489 70 HOH HOH . 
F 4 HOH A 90 490 146 HOH HOH . 
F 4 HOH A 91 491 98 HOH HOH . 
F 4 HOH A 92 492 67 HOH HOH . 
F 4 HOH A 93 493 11 HOH HOH . 
F 4 HOH A 94 494 17 HOH HOH . 
F 4 HOH A 95 495 166 HOH HOH . 
F 4 HOH A 96 496 47 HOH HOH . 
F 4 HOH A 97 497 174 HOH HOH . 
F 4 HOH A 98 498 24 HOH HOH . 
F 4 HOH A 99 499 25 HOH HOH . 
F 4 HOH A 100 500 164 HOH HOH . 
F 4 HOH A 101 501 120 HOH HOH . 
F 4 HOH A 102 502 30 HOH HOH . 
F 4 HOH A 103 503 156 HOH HOH . 
F 4 HOH A 104 504 122 HOH HOH . 
F 4 HOH A 105 505 26 HOH HOH . 
F 4 HOH A 106 506 36 HOH HOH . 
F 4 HOH A 107 507 141 HOH HOH . 
F 4 HOH A 108 508 53 HOH HOH . 
F 4 HOH A 109 509 81 HOH HOH . 
F 4 HOH A 110 510 173 HOH HOH . 
F 4 HOH A 111 511 104 HOH HOH . 
F 4 HOH A 112 512 126 HOH HOH . 
F 4 HOH A 113 513 99 HOH HOH . 
F 4 HOH A 114 514 55 HOH HOH . 
F 4 HOH A 115 515 79 HOH HOH . 
F 4 HOH A 116 516 154 HOH HOH . 
F 4 HOH A 117 517 13 HOH HOH . 
F 4 HOH A 118 518 62 HOH HOH . 
F 4 HOH A 119 519 63 HOH HOH . 
F 4 HOH A 120 520 111 HOH HOH . 
F 4 HOH A 121 521 59 HOH HOH . 
F 4 HOH A 122 522 130 HOH HOH . 
F 4 HOH A 123 523 145 HOH HOH . 
F 4 HOH A 124 524 114 HOH HOH . 
F 4 HOH A 125 525 83 HOH HOH . 
F 4 HOH A 126 526 115 HOH HOH . 
F 4 HOH A 127 527 132 HOH HOH . 
F 4 HOH A 128 528 22 HOH HOH . 
F 4 HOH A 129 529 29 HOH HOH . 
F 4 HOH A 130 530 5 HOH HOH . 
F 4 HOH A 131 531 4 HOH HOH . 
F 4 HOH A 132 532 28 HOH HOH . 
F 4 HOH A 133 533 155 HOH HOH . 
F 4 HOH A 134 534 96 HOH HOH . 
F 4 HOH A 135 535 124 HOH HOH . 
F 4 HOH A 136 536 163 HOH HOH . 
F 4 HOH A 137 537 74 HOH HOH . 
F 4 HOH A 138 538 135 HOH HOH . 
F 4 HOH A 139 539 49 HOH HOH . 
F 4 HOH A 140 540 12 HOH HOH . 
F 4 HOH A 141 541 52 HOH HOH . 
F 4 HOH A 142 542 66 HOH HOH . 
F 4 HOH A 143 543 38 HOH HOH . 
F 4 HOH A 144 544 72 HOH HOH . 
F 4 HOH A 145 545 9 HOH HOH . 
F 4 HOH A 146 546 6 HOH HOH . 
F 4 HOH A 147 547 161 HOH HOH . 
F 4 HOH A 148 548 7 HOH HOH . 
F 4 HOH A 149 549 2 HOH HOH . 
F 4 HOH A 150 550 119 HOH HOH . 
F 4 HOH A 151 551 8 HOH HOH . 
F 4 HOH A 152 552 129 HOH HOH . 
F 4 HOH A 153 553 170 HOH HOH . 
F 4 HOH A 154 554 71 HOH HOH . 
F 4 HOH A 155 555 190 HOH HOH . 
F 4 HOH A 156 556 165 HOH HOH . 
F 4 HOH A 157 557 136 HOH HOH . 
F 4 HOH A 158 558 152 HOH HOH . 
F 4 HOH A 159 559 143 HOH HOH . 
F 4 HOH A 160 560 137 HOH HOH . 
F 4 HOH A 161 561 150 HOH HOH . 
F 4 HOH A 162 562 86 HOH HOH . 
F 4 HOH A 163 563 169 HOH HOH . 
F 4 HOH A 164 564 189 HOH HOH . 
F 4 HOH A 165 565 177 HOH HOH . 
F 4 HOH A 166 566 118 HOH HOH . 
F 4 HOH A 167 567 91 HOH HOH . 
F 4 HOH A 168 568 88 HOH HOH . 
F 4 HOH A 169 569 148 HOH HOH . 
F 4 HOH A 170 570 187 HOH HOH . 
F 4 HOH A 171 571 127 HOH HOH . 
F 4 HOH A 172 572 162 HOH HOH . 
F 4 HOH A 173 573 138 HOH HOH . 
F 4 HOH A 174 574 103 HOH HOH . 
F 4 HOH A 175 575 151 HOH HOH . 
F 4 HOH A 176 576 167 HOH HOH . 
F 4 HOH A 177 577 172 HOH HOH . 
F 4 HOH A 178 578 171 HOH HOH . 
F 4 HOH A 179 579 92 HOH HOH . 
F 4 HOH A 180 580 149 HOH HOH . 
F 4 HOH A 181 581 142 HOH HOH . 
F 4 HOH A 182 582 158 HOH HOH . 
F 4 HOH A 183 583 73 HOH HOH . 
F 4 HOH A 184 584 140 HOH HOH . 
F 4 HOH A 185 585 131 HOH HOH . 
F 4 HOH A 186 586 168 HOH HOH . 
F 4 HOH A 187 587 90 HOH HOH . 
F 4 HOH A 188 588 123 HOH HOH . 
F 4 HOH A 189 589 153 HOH HOH . 
F 4 HOH A 190 590 134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 25.672 -7.523 20.479 1 36.26 ? C1 GOL 304 A 1 
HETATM 2 O O1 GOL . . . E 3 26.072 -8.556 19.583 1 32.17 ? O1 GOL 304 A 1 
HETATM 3 C C2 GOL . . . E 3 24.178 -7.365 20.297 1 41.9 ? C2 GOL 304 A 1 
HETATM 4 O O2 GOL . . . E 3 23.963 -6.871 18.974 1 43.07 ? O2 GOL 304 A 1 
HETATM 5 C C3 GOL . . . E 3 23.692 -6.395 21.362 1 39.24 ? C3 GOL 304 A 1 
HETATM 6 O O3 GOL . . . E 3 24.667 -5.368 21.497 1 33.06 ? O3 GOL 304 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#