data_5XG2
#
_model_server_result.job_id            rDaVM6LlUF0X99tZveSSEA 
_model_server_result.datetime_utc      '2024-12-26 18:29:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xg2 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":903}' 
#
_entry.id    5XG2 
#
_exptl.entry_id    5XG2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.83 
_cell.angle_gamma         90 
_cell.entry_id            5XG2 
_cell.length_a            36.175 
_cell.length_b            53.71 
_cell.length_c            71.399 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XG2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 184 n n 
C1 H11 MPD sing 185 n n 
C1 H12 MPD sing 186 n n 
C1 H13 MPD sing 187 n n 
C2 O2 MPD sing 188 n n 
C2 CM MPD sing 189 n n 
C2 C3 MPD sing 190 n n 
O2 HO2 MPD sing 191 n n 
CM HM1 MPD sing 192 n n 
CM HM2 MPD sing 193 n n 
CM HM3 MPD sing 194 n n 
C3 C4 MPD sing 195 n n 
C3 H31 MPD sing 196 n n 
C3 H32 MPD sing 197 n n 
C4 O4 MPD sing 198 n n 
C4 C5 MPD sing 199 n n 
C4 H4 MPD sing 200 n n 
O4 HO4 MPD sing 201 n n 
C5 H51 MPD sing 202 n n 
C5 H52 MPD sing 203 n n 
C5 H53 MPD sing 204 n n 
#
_atom_sites.entry_id                     5XG2 
_atom_sites.fract_transf_matrix[1][1]    0.027643 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000399 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018619 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014007 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPD A 1 901 1 MPD MPD . 
C 2 MPD A 1 902 2 MPD MPD . 
D 2 MPD A 1 903 3 MPD MPD . 
E 2 MPD A 1 904 4 MPD MPD . 
F 3 HOH A 1 1001 80 HOH HOH . 
F 3 HOH A 2 1002 96 HOH HOH . 
F 3 HOH A 3 1003 99 HOH HOH . 
F 3 HOH A 4 1004 25 HOH HOH . 
F 3 HOH A 5 1005 27 HOH HOH . 
F 3 HOH A 6 1006 26 HOH HOH . 
F 3 HOH A 7 1007 109 HOH HOH . 
F 3 HOH A 8 1008 73 HOH HOH . 
F 3 HOH A 9 1009 61 HOH HOH . 
F 3 HOH A 10 1010 1 HOH HOH . 
F 3 HOH A 11 1011 102 HOH HOH . 
F 3 HOH A 12 1012 43 HOH HOH . 
F 3 HOH A 13 1013 17 HOH HOH . 
F 3 HOH A 14 1014 40 HOH HOH . 
F 3 HOH A 15 1015 23 HOH HOH . 
F 3 HOH A 16 1016 13 HOH HOH . 
F 3 HOH A 17 1017 21 HOH HOH . 
F 3 HOH A 18 1018 9 HOH HOH . 
F 3 HOH A 19 1019 98 HOH HOH . 
F 3 HOH A 20 1020 57 HOH HOH . 
F 3 HOH A 21 1021 48 HOH HOH . 
F 3 HOH A 22 1022 15 HOH HOH . 
F 3 HOH A 23 1023 88 HOH HOH . 
F 3 HOH A 24 1024 19 HOH HOH . 
F 3 HOH A 25 1025 2 HOH HOH . 
F 3 HOH A 26 1026 85 HOH HOH . 
F 3 HOH A 27 1027 6 HOH HOH . 
F 3 HOH A 28 1028 3 HOH HOH . 
F 3 HOH A 29 1029 11 HOH HOH . 
F 3 HOH A 30 1030 104 HOH HOH . 
F 3 HOH A 31 1031 16 HOH HOH . 
F 3 HOH A 32 1032 33 HOH HOH . 
F 3 HOH A 33 1033 101 HOH HOH . 
F 3 HOH A 34 1034 14 HOH HOH . 
F 3 HOH A 35 1035 20 HOH HOH . 
F 3 HOH A 36 1036 24 HOH HOH . 
F 3 HOH A 37 1037 22 HOH HOH . 
F 3 HOH A 38 1038 42 HOH HOH . 
F 3 HOH A 39 1039 4 HOH HOH . 
F 3 HOH A 40 1040 53 HOH HOH . 
F 3 HOH A 41 1041 45 HOH HOH . 
F 3 HOH A 42 1042 59 HOH HOH . 
F 3 HOH A 43 1043 41 HOH HOH . 
F 3 HOH A 44 1044 31 HOH HOH . 
F 3 HOH A 45 1045 77 HOH HOH . 
F 3 HOH A 46 1046 72 HOH HOH . 
F 3 HOH A 47 1047 8 HOH HOH . 
F 3 HOH A 48 1048 38 HOH HOH . 
F 3 HOH A 49 1049 87 HOH HOH . 
F 3 HOH A 50 1050 81 HOH HOH . 
F 3 HOH A 51 1051 10 HOH HOH . 
F 3 HOH A 52 1052 108 HOH HOH . 
F 3 HOH A 53 1053 107 HOH HOH . 
F 3 HOH A 54 1054 49 HOH HOH . 
F 3 HOH A 55 1055 114 HOH HOH . 
F 3 HOH A 56 1056 7 HOH HOH . 
F 3 HOH A 57 1057 44 HOH HOH . 
F 3 HOH A 58 1058 66 HOH HOH . 
F 3 HOH A 59 1059 46 HOH HOH . 
F 3 HOH A 60 1060 47 HOH HOH . 
F 3 HOH A 61 1061 65 HOH HOH . 
F 3 HOH A 62 1062 12 HOH HOH . 
F 3 HOH A 63 1063 111 HOH HOH . 
F 3 HOH A 64 1064 68 HOH HOH . 
F 3 HOH A 65 1065 39 HOH HOH . 
F 3 HOH A 66 1066 5 HOH HOH . 
F 3 HOH A 67 1067 113 HOH HOH . 
F 3 HOH A 68 1068 70 HOH HOH . 
F 3 HOH A 69 1069 82 HOH HOH . 
F 3 HOH A 70 1070 62 HOH HOH . 
F 3 HOH A 71 1071 93 HOH HOH . 
F 3 HOH A 72 1072 83 HOH HOH . 
F 3 HOH A 73 1073 110 HOH HOH . 
F 3 HOH A 74 1074 105 HOH HOH . 
F 3 HOH A 75 1075 75 HOH HOH . 
F 3 HOH A 76 1076 90 HOH HOH . 
F 3 HOH A 77 1077 95 HOH HOH . 
F 3 HOH A 78 1078 69 HOH HOH . 
F 3 HOH A 79 1079 94 HOH HOH . 
F 3 HOH A 80 1080 112 HOH HOH . 
F 3 HOH A 81 1081 103 HOH HOH . 
F 3 HOH A 82 1082 92 HOH HOH . 
F 3 HOH A 83 1083 91 HOH HOH . 
F 3 HOH A 84 1084 54 HOH HOH . 
F 3 HOH A 85 1085 84 HOH HOH . 
F 3 HOH A 86 1086 79 HOH HOH . 
F 3 HOH A 87 1087 51 HOH HOH . 
F 3 HOH A 88 1088 100 HOH HOH . 
F 3 HOH A 89 1089 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 2 56.424 -15.574 34.903 1 64.63 ? C1 MPD 903 A 1 
HETATM 2 C C2 MPD . . . D 2 57.716 -16.039 34.245 1 56.26 ? C2 MPD 903 A 1 
HETATM 3 O O2 MPD . . . D 2 57.391 -16.422 32.885 1 66.93 ? O2 MPD 903 A 1 
HETATM 4 C CM MPD . . . D 2 58.68 -14.867 34.125 1 56.28 ? CM MPD 903 A 1 
HETATM 5 C C3 MPD . . . D 2 58.3 -17.287 34.926 1 64.89 ? C3 MPD 903 A 1 
HETATM 6 C C4 MPD . . . D 2 58.938 -17.225 36.329 1 65.06 ? C4 MPD 903 A 1 
HETATM 7 O O4 MPD . . . D 2 59.899 -16.197 36.463 1 73.01 ? O4 MPD 903 A 1 
HETATM 8 C C5 MPD . . . D 2 57.926 -17.139 37.474 1 74.31 ? C5 MPD 903 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#