data_5XG4 # _model_server_result.job_id NLHpkSgnnG8F74IWDf1m5w _model_server_result.datetime_utc '2025-03-05 21:33:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5XG4 # _exptl.entry_id 5XG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XG4 _cell.length_a 119.969 _cell.length_b 119.969 _cell.length_c 41.78 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C15 H10 O7' _chem_comp.formula_weight 302.236 _chem_comp.id QUE _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms QUERCETIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QUE doub 320 n y C1 C6 QUE sing 321 n y C1 H1 QUE sing 322 n n C2 C3 QUE sing 323 n y C2 O30 QUE sing 324 n n C3 C4 QUE doub 325 n y C3 C9 QUE sing 326 n y C4 C5 QUE sing 327 n y C4 O12 QUE sing 328 n y C5 C6 QUE doub 329 n y C5 H5 QUE sing 330 n n C6 O29 QUE sing 331 n n C9 C10 QUE sing 332 n y C9 O13 QUE doub 333 n n C10 C11 QUE doub 334 n y C10 O27 QUE sing 335 n n C11 C14 QUE sing 336 n y C11 O12 QUE sing 337 n y C14 C15 QUE doub 338 n y C14 C19 QUE sing 339 n y C15 C16 QUE sing 340 n y C15 H15 QUE sing 341 n n C16 C17 QUE doub 342 n y C16 H16 QUE sing 343 n n C17 C18 QUE sing 344 n y C17 O24 QUE sing 345 n n C18 C19 QUE doub 346 n y C18 O23 QUE sing 347 n n C19 H19 QUE sing 348 n n O23 HO3 QUE sing 349 n n O24 HO4 QUE sing 350 n n O27 HO7 QUE sing 351 n n O29 HO9 QUE sing 352 n n O30 HO0 QUE sing 353 n n # _atom_sites.entry_id 5XG4 _atom_sites.fract_transf_matrix[1][1] 0.008335 _atom_sites.fract_transf_matrix[1][2] 0.004812 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QUE U 1 301 301 QUE QUE . C 3 PG6 U 1 302 302 PG6 PG6 . D 4 HOH U 1 401 401 HOH HOH . D 4 HOH U 2 402 402 HOH HOH . D 4 HOH U 3 403 403 HOH HOH . D 4 HOH U 4 404 404 HOH HOH . D 4 HOH U 5 405 405 HOH HOH . D 4 HOH U 6 406 406 HOH HOH . D 4 HOH U 7 407 407 HOH HOH . D 4 HOH U 8 408 408 HOH HOH . D 4 HOH U 9 409 409 HOH HOH . D 4 HOH U 10 410 410 HOH HOH . D 4 HOH U 11 411 411 HOH HOH . D 4 HOH U 12 412 412 HOH HOH . D 4 HOH U 13 413 413 HOH HOH . D 4 HOH U 14 414 414 HOH HOH . D 4 HOH U 15 415 415 HOH HOH . D 4 HOH U 16 416 416 HOH HOH . D 4 HOH U 17 417 417 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QUE . . . B 2 -24.938 -10.399 -2.248 1 84.33 ? C1 QUE 301 U 1 HETATM 2 C C2 QUE . . . B 2 -25.966 -10.526 -3.184 1 86.49 ? C2 QUE 301 U 1 HETATM 3 C C3 QUE . . . B 2 -26.786 -11.666 -3.161 1 90.02 ? C3 QUE 301 U 1 HETATM 4 C C4 QUE . . . B 2 -26.599 -12.69 -2.203 1 91.56 ? C4 QUE 301 U 1 HETATM 5 C C5 QUE . . . B 2 -25.563 -12.535 -1.268 1 90.5 ? C5 QUE 301 U 1 HETATM 6 C C6 QUE . . . B 2 -24.739 -11.398 -1.295 1 87.93 ? C6 QUE 301 U 1 HETATM 7 C C9 QUE . . . B 2 -27.882 -11.806 -4.157 1 86.71 ? C9 QUE 301 U 1 HETATM 8 C C10 QUE . . . B 2 -28.72 -13.017 -4.097 1 84.15 ? C10 QUE 301 U 1 HETATM 9 C C11 QUE . . . B 2 -28.441 -14.063 -3.069 1 86.07 ? C11 QUE 301 U 1 HETATM 10 C C14 QUE . . . B 2 -29.35 -15.265 -2.992 1 85.98 ? C14 QUE 301 U 1 HETATM 11 C C15 QUE . . . B 2 -30.085 -15.392 -1.802 1 86.24 ? C15 QUE 301 U 1 HETATM 12 C C16 QUE . . . B 2 -30.995 -16.441 -1.612 1 81.37 ? C16 QUE 301 U 1 HETATM 13 C C17 QUE . . . B 2 -31.222 -17.384 -2.607 1 78.88 ? C17 QUE 301 U 1 HETATM 14 C C18 QUE . . . B 2 -30.51 -17.259 -3.804 1 81.81 ? C18 QUE 301 U 1 HETATM 15 C C19 QUE . . . B 2 -29.586 -16.206 -4.014 1 81.25 ? C19 QUE 301 U 1 HETATM 16 O O12 QUE . . . B 2 -27.412 -13.825 -2.164 1 88.8 ? O12 QUE 301 U 1 HETATM 17 O O13 QUE . . . B 2 -28.096 -10.928 -5.021 1 87.56 ? O13 QUE 301 U 1 HETATM 18 O O23 QUE . . . B 2 -30.739 -18.187 -4.771 1 89.55 ? O23 QUE 301 U 1 HETATM 19 O O24 QUE . . . B 2 -32.126 -18.393 -2.394 1 62.83 ? O24 QUE 301 U 1 HETATM 20 O O27 QUE . . . B 2 -29.708 -13.146 -5.007 1 83.61 ? O27 QUE 301 U 1 HETATM 21 O O29 QUE . . . B 2 -23.735 -11.255 -0.389 1 90.02 ? O29 QUE 301 U 1 HETATM 22 O O30 QUE . . . B 2 -26.164 -9.548 -4.12 1 77.6 ? O30 QUE 301 U 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #