data_5XG4 # _model_server_result.job_id tdhFprltbNi1MtaUSpnV5g _model_server_result.datetime_utc '2025-01-10 08:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5XG4 # _exptl.entry_id 5XG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.331 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XG4 _cell.length_a 119.969 _cell.length_b 119.969 _cell.length_c 41.78 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C12 H26 O6' _chem_comp.formula_weight 266.331 _chem_comp.id PG6 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PG6 sing 237 n n C1 H11 PG6 sing 238 n n C1 H12 PG6 sing 239 n n C1 H13 PG6 sing 240 n n O1 C2 PG6 sing 241 n n C2 C3 PG6 sing 242 n n C2 H21 PG6 sing 243 n n C2 H22 PG6 sing 244 n n C3 O2 PG6 sing 245 n n C3 H31 PG6 sing 246 n n C3 H32 PG6 sing 247 n n O2 C4 PG6 sing 248 n n C4 C5 PG6 sing 249 n n C4 H41 PG6 sing 250 n n C4 H42 PG6 sing 251 n n C5 O3 PG6 sing 252 n n C5 H51 PG6 sing 253 n n C5 H52 PG6 sing 254 n n O3 C6 PG6 sing 255 n n C6 C7 PG6 sing 256 n n C6 H61 PG6 sing 257 n n C6 H62 PG6 sing 258 n n C7 O4 PG6 sing 259 n n C7 H71 PG6 sing 260 n n C7 H72 PG6 sing 261 n n O4 C8 PG6 sing 262 n n C8 C9 PG6 sing 263 n n C8 H81 PG6 sing 264 n n C8 H82 PG6 sing 265 n n C9 O5 PG6 sing 266 n n C9 H91 PG6 sing 267 n n C9 H92 PG6 sing 268 n n O5 C10 PG6 sing 269 n n C10 C11 PG6 sing 270 n n C10 H101 PG6 sing 271 n n C10 H102 PG6 sing 272 n n C11 O6 PG6 sing 273 n n C11 H111 PG6 sing 274 n n C11 H112 PG6 sing 275 n n O6 C12 PG6 sing 276 n n C12 H121 PG6 sing 277 n n C12 H122 PG6 sing 278 n n C12 H123 PG6 sing 279 n n # _atom_sites.entry_id 5XG4 _atom_sites.fract_transf_matrix[1][1] 0.008335 _atom_sites.fract_transf_matrix[1][2] 0.004812 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QUE U 1 301 301 QUE QUE . C 3 PG6 U 1 302 302 PG6 PG6 . D 4 HOH U 1 401 401 HOH HOH . D 4 HOH U 2 402 402 HOH HOH . D 4 HOH U 3 403 403 HOH HOH . D 4 HOH U 4 404 404 HOH HOH . D 4 HOH U 5 405 405 HOH HOH . D 4 HOH U 6 406 406 HOH HOH . D 4 HOH U 7 407 407 HOH HOH . D 4 HOH U 8 408 408 HOH HOH . D 4 HOH U 9 409 409 HOH HOH . D 4 HOH U 10 410 410 HOH HOH . D 4 HOH U 11 411 411 HOH HOH . D 4 HOH U 12 412 412 HOH HOH . D 4 HOH U 13 413 413 HOH HOH . D 4 HOH U 14 414 414 HOH HOH . D 4 HOH U 15 415 415 HOH HOH . D 4 HOH U 16 416 416 HOH HOH . D 4 HOH U 17 417 417 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG6 . . . C 3 -19.424 -8.914 -6.469 1 81.08 ? O1 PG6 302 U 1 HETATM 2 C C2 PG6 . . . C 3 -19.625 -9.326 -5.109 1 81.11 ? C2 PG6 302 U 1 HETATM 3 C C3 PG6 . . . C 3 -20.55 -10.533 -5.089 1 79.6 ? C3 PG6 302 U 1 HETATM 4 O O2 PG6 . . . C 3 -21.898 -10.073 -4.978 1 79.2 ? O2 PG6 302 U 1 HETATM 5 C C4 PG6 . . . C 3 -22.861 -11.109 -4.868 1 76.85 ? C4 PG6 302 U 1 HETATM 6 C C5 PG6 . . . C 3 -22.998 -11.83 -6.201 1 77.6 ? C5 PG6 302 U 1 HETATM 7 O O3 PG6 . . . C 3 -24.193 -12.594 -6.168 1 76.38 ? O3 PG6 302 U 1 HETATM 8 C C6 PG6 . . . C 3 -24.013 -13.895 -5.62 1 72.07 ? C6 PG6 302 U 1 HETATM 9 C C7 PG6 . . . C 3 -25.357 -14.349 -5.08 1 71.64 ? C7 PG6 302 U 1 HETATM 10 O O4 PG6 . . . C 3 -25.673 -15.602 -5.681 1 69.8 ? O4 PG6 302 U 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #