data_5XG8 # _model_server_result.job_id OeRgvYhirF4qsX-UkvpYHg _model_server_result.datetime_utc '2024-11-22 21:33:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5XG8 # _exptl.entry_id 5XG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XG8 _cell.length_a 58.037 _cell.length_b 92.207 _cell.length_c 50.703 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 136 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 137 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 138 _struct_conn.ptnr2_symmetry 4_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.054 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5XG8 _atom_sites.fract_transf_matrix[1][1] 0.01723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL B4H . C 3 HOH A 1 301 79 HOH HOH . C 3 HOH A 2 302 89 HOH HOH . C 3 HOH A 3 303 99 HOH HOH . C 3 HOH A 4 304 53 HOH HOH . C 3 HOH A 5 305 117 HOH HOH . C 3 HOH A 6 306 48 HOH HOH . C 3 HOH A 7 307 59 HOH HOH . C 3 HOH A 8 308 63 HOH HOH . C 3 HOH A 9 309 37 HOH HOH . C 3 HOH A 10 310 62 HOH HOH . C 3 HOH A 11 311 77 HOH HOH . C 3 HOH A 12 312 56 HOH HOH . C 3 HOH A 13 313 103 HOH HOH . C 3 HOH A 14 314 35 HOH HOH . C 3 HOH A 15 315 73 HOH HOH . C 3 HOH A 16 316 123 HOH HOH . C 3 HOH A 17 317 82 HOH HOH . C 3 HOH A 18 318 112 HOH HOH . C 3 HOH A 19 319 31 HOH HOH . C 3 HOH A 20 320 26 HOH HOH . C 3 HOH A 21 321 2 HOH HOH . C 3 HOH A 22 322 1 HOH HOH . C 3 HOH A 23 323 33 HOH HOH . C 3 HOH A 24 324 17 HOH HOH . C 3 HOH A 25 325 87 HOH HOH . C 3 HOH A 26 326 61 HOH HOH . C 3 HOH A 27 327 12 HOH HOH . C 3 HOH A 28 328 70 HOH HOH . C 3 HOH A 29 329 15 HOH HOH . C 3 HOH A 30 330 86 HOH HOH . C 3 HOH A 31 331 21 HOH HOH . C 3 HOH A 32 332 122 HOH HOH . C 3 HOH A 33 333 22 HOH HOH . C 3 HOH A 34 334 3 HOH HOH . C 3 HOH A 35 335 68 HOH HOH . C 3 HOH A 36 336 51 HOH HOH . C 3 HOH A 37 337 40 HOH HOH . C 3 HOH A 38 338 39 HOH HOH . C 3 HOH A 39 339 24 HOH HOH . C 3 HOH A 40 340 119 HOH HOH . C 3 HOH A 41 341 94 HOH HOH . C 3 HOH A 42 342 54 HOH HOH . C 3 HOH A 43 343 32 HOH HOH . C 3 HOH A 44 344 76 HOH HOH . C 3 HOH A 45 345 9 HOH HOH . C 3 HOH A 46 346 7 HOH HOH . C 3 HOH A 47 347 101 HOH HOH . C 3 HOH A 48 348 116 HOH HOH . C 3 HOH A 49 349 20 HOH HOH . C 3 HOH A 50 350 18 HOH HOH . C 3 HOH A 51 351 19 HOH HOH . C 3 HOH A 52 352 6 HOH HOH . C 3 HOH A 53 353 111 HOH HOH . C 3 HOH A 54 354 95 HOH HOH . C 3 HOH A 55 355 121 HOH HOH . C 3 HOH A 56 356 11 HOH HOH . C 3 HOH A 57 357 96 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 98 HOH HOH . C 3 HOH A 60 360 5 HOH HOH . C 3 HOH A 61 361 74 HOH HOH . C 3 HOH A 62 362 41 HOH HOH . C 3 HOH A 63 363 36 HOH HOH . C 3 HOH A 64 364 65 HOH HOH . C 3 HOH A 65 365 47 HOH HOH . C 3 HOH A 66 366 46 HOH HOH . C 3 HOH A 67 367 43 HOH HOH . C 3 HOH A 68 368 29 HOH HOH . C 3 HOH A 69 369 8 HOH HOH . C 3 HOH A 70 370 14 HOH HOH . C 3 HOH A 71 371 106 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 64 HOH HOH . C 3 HOH A 74 374 45 HOH HOH . C 3 HOH A 75 375 69 HOH HOH . C 3 HOH A 76 376 34 HOH HOH . C 3 HOH A 77 377 16 HOH HOH . C 3 HOH A 78 378 23 HOH HOH . C 3 HOH A 79 379 114 HOH HOH . C 3 HOH A 80 380 88 HOH HOH . C 3 HOH A 81 381 120 HOH HOH . C 3 HOH A 82 382 27 HOH HOH . C 3 HOH A 83 383 10 HOH HOH . C 3 HOH A 84 384 42 HOH HOH . C 3 HOH A 85 385 38 HOH HOH . C 3 HOH A 86 386 93 HOH HOH . C 3 HOH A 87 387 30 HOH HOH . C 3 HOH A 88 388 102 HOH HOH . C 3 HOH A 89 389 110 HOH HOH . C 3 HOH A 90 390 25 HOH HOH . C 3 HOH A 91 391 4 HOH HOH . C 3 HOH A 92 392 105 HOH HOH . C 3 HOH A 93 393 28 HOH HOH . C 3 HOH A 94 394 55 HOH HOH . C 3 HOH A 95 395 81 HOH HOH . C 3 HOH A 96 396 44 HOH HOH . C 3 HOH A 97 397 92 HOH HOH . C 3 HOH A 98 398 60 HOH HOH . C 3 HOH A 99 399 52 HOH HOH . C 3 HOH A 100 400 78 HOH HOH . C 3 HOH A 101 401 113 HOH HOH . C 3 HOH A 102 402 50 HOH HOH . C 3 HOH A 103 403 124 HOH HOH . C 3 HOH A 104 404 13 HOH HOH . C 3 HOH A 105 405 75 HOH HOH . C 3 HOH A 106 406 115 HOH HOH . C 3 HOH A 107 407 67 HOH HOH . C 3 HOH A 108 408 118 HOH HOH . C 3 HOH A 109 409 57 HOH HOH . C 3 HOH A 110 410 66 HOH HOH . C 3 HOH A 111 411 85 HOH HOH . C 3 HOH A 112 412 49 HOH HOH . C 3 HOH A 113 413 104 HOH HOH . C 3 HOH A 114 414 71 HOH HOH . C 3 HOH A 115 415 90 HOH HOH . C 3 HOH A 116 416 83 HOH HOH . C 3 HOH A 117 417 80 HOH HOH . C 3 HOH A 118 418 100 HOH HOH . C 3 HOH A 119 419 97 HOH HOH . C 3 HOH A 120 420 84 HOH HOH . C 3 HOH A 121 421 108 HOH HOH . C 3 HOH A 122 422 91 HOH HOH . C 3 HOH A 123 423 109 HOH HOH . C 3 HOH A 124 424 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . B 2 -9.835 -15.331 20.587 0.38 34.79 ? C1 GOL 201 A 1 HETATM 2 C C1 GOL . B . B 2 -9.419 -17.099 18.66 0.54 35.32 ? C1 GOL 201 A 1 HETATM 3 O O1 GOL . A . B 2 -9.357 -14.984 21.86 0.38 27.69 ? O1 GOL 201 A 1 HETATM 4 O O1 GOL . B . B 2 -10.798 -16.877 18.511 0.54 28.96 ? O1 GOL 201 A 1 HETATM 5 C C2 GOL . A . B 2 -8.709 -15.873 19.704 0.38 35.8 ? C2 GOL 201 A 1 HETATM 6 C C2 GOL . B . B 2 -8.744 -16 19.485 0.54 36.06 ? C2 GOL 201 A 1 HETATM 7 O O2 GOL . A . B 2 -7.64 -16.32 20.49 0.38 38.68 ? O2 GOL 201 A 1 HETATM 8 O O2 GOL . B . B 2 -7.588 -16.541 20.065 0.54 35.1 ? O2 GOL 201 A 1 HETATM 9 C C3 GOL . A . B 2 -9.233 -17.04 18.868 0.38 35.33 ? C3 GOL 201 A 1 HETATM 10 C C3 GOL . B . B 2 -9.687 -15.458 20.563 0.54 34.96 ? C3 GOL 201 A 1 HETATM 11 O O3 GOL . A . B 2 -8.4 -17.24 17.76 0.38 35.97 ? O3 GOL 201 A 1 HETATM 12 O O3 GOL . B . B 2 -8.961 -14.88 21.614 0.54 30.96 ? O3 GOL 201 A 1 HETATM 13 H H11 GOL . A . B 2 -10.521 -16.011 20.679 0.46 41.75 ? H11 GOL 201 A 1 HETATM 14 H H11 GOL . B . B 2 -9.283 -17.951 19.102 0.54 42.38 ? H11 GOL 201 A 1 HETATM 15 H H12 GOL . A . B 2 -10.219 -14.546 20.166 0.38 41.75 ? H12 GOL 201 A 1 HETATM 16 H H12 GOL . B . B 2 -9.008 -17.13 17.782 0.54 42.38 ? H12 GOL 201 A 1 HETATM 17 H HO1 GOL . A . B 2 -9.986 -15.052 22.427 0.38 33.22 ? HO1 GOL 201 A 1 HETATM 18 H HO1 GOL . B . B 2 -11.203 -17.623 18.472 0.54 34.76 ? HO1 GOL 201 A 1 HETATM 19 H H2 GOL . A . B 2 -8.399 -15.169 19.113 0.38 42.96 ? H2 GOL 201 A 1 HETATM 20 H H2 GOL . B . B 2 -8.49 -15.273 18.895 0.54 43.27 ? H2 GOL 201 A 1 HETATM 21 H HO2 GOL . A . B 2 -7.124 -16.803 20.017 0.38 46.42 ? HO2 GOL 201 A 1 HETATM 22 H HO2 GOL . B . B 2 -6.965 -16.562 19.487 0.54 42.12 ? HO2 GOL 201 A 1 HETATM 23 H H31 GOL . A . B 2 -10.132 -16.84 18.564 0.38 42.39 ? H31 GOL 201 A 1 HETATM 24 H H31 GOL . B . B 2 -10.227 -16.185 20.91 0.54 41.95 ? H31 GOL 201 A 1 HETATM 25 H H32 GOL . A . B 2 -9.247 -17.844 19.41 0.38 42.39 ? H32 GOL 201 A 1 HETATM 26 H H32 GOL . B . B 2 -10.269 -14.788 20.171 0.54 41.95 ? H32 GOL 201 A 1 HETATM 27 H HO3 GOL . A . B 2 -7.592 -17.289 18.018 0.38 43.16 ? HO3 GOL 201 A 1 HETATM 28 H HO3 GOL . B . B 2 -9.474 -14.763 22.282 0.54 37.15 ? HO3 GOL 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #