data_5XGI # _model_server_result.job_id zQNzF71MCmF_0qUb19uoGw _model_server_result.datetime_utc '2024-10-18 15:30:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1102}' # _entry.id 5XGI # _exptl.entry_id 5XGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XGI _cell.length_a 71.348 _cell.length_b 135.825 _cell.length_c 150.245 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 292 n n O1 H1 P6G sing 293 n n C2 C3 P6G sing 294 n n C2 H21 P6G sing 295 n n C2 H22 P6G sing 296 n n C3 O4 P6G sing 297 n n C3 H31 P6G sing 298 n n C3 H32 P6G sing 299 n n O4 C5 P6G sing 300 n n C5 C6 P6G sing 301 n n C5 H51 P6G sing 302 n n C5 H52 P6G sing 303 n n C6 O7 P6G sing 304 n n C6 H61 P6G sing 305 n n C6 H62 P6G sing 306 n n O7 C8 P6G sing 307 n n C8 C9 P6G sing 308 n n C8 H81 P6G sing 309 n n C8 H82 P6G sing 310 n n C9 O10 P6G sing 311 n n C9 H91 P6G sing 312 n n C9 H92 P6G sing 313 n n O10 C11 P6G sing 314 n n C11 C12 P6G sing 315 n n C11 H111 P6G sing 316 n n C11 H112 P6G sing 317 n n C12 O13 P6G sing 318 n n C12 H121 P6G sing 319 n n C12 H122 P6G sing 320 n n O13 C14 P6G sing 321 n n C14 C15 P6G sing 322 n n C14 H141 P6G sing 323 n n C14 H142 P6G sing 324 n n C15 O16 P6G sing 325 n n C15 H151 P6G sing 326 n n C15 H152 P6G sing 327 n n O16 C17 P6G sing 328 n n C17 C18 P6G sing 329 n n C17 H171 P6G sing 330 n n C17 H172 P6G sing 331 n n C18 O19 P6G sing 332 n n C18 H181 P6G sing 333 n n C18 H182 P6G sing 334 n n O19 H19 P6G sing 335 n n # _atom_sites.entry_id 5XGI _atom_sites.fract_transf_matrix[1][1] 0.014016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 84R A 1 1101 1 84R C16 . D 4 P6G A 1 1102 1 P6G P6G . E 5 SO4 A 1 1103 3 SO4 SO4 . F 6 GOL A 1 1104 5 GOL GOL . G 6 GOL A 1 1105 1 GOL GOL . H 5 SO4 B 1 601 2 SO4 SO4 . I 5 SO4 B 1 602 4 SO4 SO4 . J 7 HOH A 1 1201 48 HOH HOH . J 7 HOH A 2 1202 53 HOH HOH . J 7 HOH A 3 1203 85 HOH HOH . J 7 HOH A 4 1204 5 HOH HOH . J 7 HOH A 5 1205 30 HOH HOH . J 7 HOH A 6 1206 1 HOH HOH . J 7 HOH A 7 1207 64 HOH HOH . J 7 HOH A 8 1208 21 HOH HOH . J 7 HOH A 9 1209 6 HOH HOH . J 7 HOH A 10 1210 83 HOH HOH . J 7 HOH A 11 1211 15 HOH HOH . J 7 HOH A 12 1212 35 HOH HOH . J 7 HOH A 13 1213 18 HOH HOH . J 7 HOH A 14 1214 14 HOH HOH . J 7 HOH A 15 1215 37 HOH HOH . J 7 HOH A 16 1216 49 HOH HOH . J 7 HOH A 17 1217 40 HOH HOH . J 7 HOH A 18 1218 32 HOH HOH . J 7 HOH A 19 1219 2 HOH HOH . J 7 HOH A 20 1220 75 HOH HOH . J 7 HOH A 21 1221 87 HOH HOH . J 7 HOH A 22 1222 3 HOH HOH . J 7 HOH A 23 1223 78 HOH HOH . J 7 HOH A 24 1224 19 HOH HOH . J 7 HOH A 25 1225 98 HOH HOH . J 7 HOH A 26 1226 7 HOH HOH . J 7 HOH A 27 1227 65 HOH HOH . J 7 HOH A 28 1228 99 HOH HOH . J 7 HOH A 29 1229 52 HOH HOH . J 7 HOH A 30 1230 31 HOH HOH . J 7 HOH A 31 1231 70 HOH HOH . J 7 HOH A 32 1232 79 HOH HOH . J 7 HOH A 33 1233 38 HOH HOH . J 7 HOH A 34 1234 97 HOH HOH . J 7 HOH A 35 1235 34 HOH HOH . J 7 HOH A 36 1236 26 HOH HOH . J 7 HOH A 37 1237 102 HOH HOH . J 7 HOH A 38 1238 12 HOH HOH . J 7 HOH A 39 1239 8 HOH HOH . J 7 HOH A 40 1240 100 HOH HOH . J 7 HOH A 41 1241 22 HOH HOH . J 7 HOH A 42 1242 25 HOH HOH . J 7 HOH A 43 1243 11 HOH HOH . J 7 HOH A 44 1244 42 HOH HOH . J 7 HOH A 45 1245 68 HOH HOH . J 7 HOH A 46 1246 91 HOH HOH . J 7 HOH A 47 1247 28 HOH HOH . J 7 HOH A 48 1248 81 HOH HOH . J 7 HOH A 49 1249 36 HOH HOH . J 7 HOH A 50 1250 46 HOH HOH . J 7 HOH A 51 1251 41 HOH HOH . J 7 HOH A 52 1252 27 HOH HOH . J 7 HOH A 53 1253 88 HOH HOH . J 7 HOH A 54 1254 39 HOH HOH . J 7 HOH A 55 1255 67 HOH HOH . J 7 HOH A 56 1256 74 HOH HOH . J 7 HOH A 57 1257 61 HOH HOH . J 7 HOH A 58 1258 96 HOH HOH . J 7 HOH A 59 1259 29 HOH HOH . J 7 HOH A 60 1260 45 HOH HOH . J 7 HOH A 61 1261 76 HOH HOH . J 7 HOH A 62 1262 55 HOH HOH . J 7 HOH A 63 1263 44 HOH HOH . J 7 HOH A 64 1264 58 HOH HOH . J 7 HOH A 65 1265 23 HOH HOH . J 7 HOH A 66 1266 63 HOH HOH . J 7 HOH A 67 1267 62 HOH HOH . J 7 HOH A 68 1268 50 HOH HOH . J 7 HOH A 69 1269 86 HOH HOH . J 7 HOH A 70 1270 82 HOH HOH . J 7 HOH A 71 1271 84 HOH HOH . J 7 HOH A 72 1272 72 HOH HOH . J 7 HOH A 73 1273 56 HOH HOH . J 7 HOH A 74 1274 10 HOH HOH . J 7 HOH A 75 1275 57 HOH HOH . J 7 HOH A 76 1276 9 HOH HOH . J 7 HOH A 77 1277 73 HOH HOH . J 7 HOH A 78 1278 89 HOH HOH . J 7 HOH A 79 1279 54 HOH HOH . J 7 HOH A 80 1280 47 HOH HOH . J 7 HOH A 81 1281 95 HOH HOH . J 7 HOH A 82 1282 80 HOH HOH . J 7 HOH A 83 1283 101 HOH HOH . J 7 HOH A 84 1284 51 HOH HOH . K 7 HOH B 1 701 94 HOH HOH . K 7 HOH B 2 702 20 HOH HOH . K 7 HOH B 3 703 33 HOH HOH . K 7 HOH B 4 704 66 HOH HOH . K 7 HOH B 5 705 90 HOH HOH . K 7 HOH B 6 706 17 HOH HOH . K 7 HOH B 7 707 13 HOH HOH . K 7 HOH B 8 708 24 HOH HOH . K 7 HOH B 9 709 92 HOH HOH . K 7 HOH B 10 710 77 HOH HOH . K 7 HOH B 11 711 4 HOH HOH . K 7 HOH B 12 712 71 HOH HOH . K 7 HOH B 13 713 43 HOH HOH . K 7 HOH B 14 714 60 HOH HOH . K 7 HOH B 15 715 69 HOH HOH . K 7 HOH B 16 716 103 HOH HOH . K 7 HOH B 17 717 59 HOH HOH . K 7 HOH B 18 718 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . D 4 14.364 41.298 54.343 1 88.4 ? O1 P6G 1102 A 1 HETATM 2 C C2 P6G . . . D 4 15.4 42.26 54.578 1 89.45 ? C2 P6G 1102 A 1 HETATM 3 C C3 P6G . . . D 4 16.741 41.546 54.711 1 90.37 ? C3 P6G 1102 A 1 HETATM 4 O O4 P6G . . . D 4 17.735 42.464 55.182 1 91.5 ? O4 P6G 1102 A 1 HETATM 5 C C5 P6G . . . D 4 18.784 42.744 54.249 1 92.27 ? C5 P6G 1102 A 1 HETATM 6 C C6 P6G . . . D 4 19.905 43.523 54.937 1 92.2 ? C6 P6G 1102 A 1 HETATM 7 O O7 P6G . . . D 4 20.996 42.643 55.214 1 93.52 ? O7 P6G 1102 A 1 HETATM 8 C C8 P6G . . . D 4 22.08 43.264 55.907 1 93.56 ? C8 P6G 1102 A 1 HETATM 9 C C9 P6G . . . D 4 23.345 42.434 55.705 1 93.14 ? C9 P6G 1102 A 1 HETATM 10 O O10 P6G . . . D 4 24.493 43.284 55.718 1 92.25 ? O10 P6G 1102 A 1 HETATM 11 C C11 P6G . . . D 4 25.729 42.583 55.562 1 92.72 ? C11 P6G 1102 A 1 HETATM 12 C C12 P6G . . . D 4 26.344 42.311 56.93 1 93.74 ? C12 P6G 1102 A 1 HETATM 13 O O13 P6G . . . D 4 26.603 43.549 57.6 1 95.18 ? O13 P6G 1102 A 1 HETATM 14 C C14 P6G . . . D 4 27.554 43.474 58.668 1 95.2 ? C14 P6G 1102 A 1 HETATM 15 C C15 P6G . . . D 4 26.98 42.731 59.873 1 95.74 ? C15 P6G 1102 A 1 HETATM 16 O O16 P6G . . . D 4 27.621 41.459 60.023 1 96.66 ? O16 P6G 1102 A 1 HETATM 17 C C17 P6G . . . D 4 28.058 41.185 61.358 1 97.47 ? C17 P6G 1102 A 1 HETATM 18 C C18 P6G . . . D 4 28.727 39.812 61.448 1 97.35 ? C18 P6G 1102 A 1 HETATM 19 O O19 P6G . . . D 4 28.079 38.852 60.603 1 96.72 ? O19 P6G 1102 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #