data_5XGK # _model_server_result.job_id gKYf94FaTkW45NJA4Atf8Q _model_server_result.datetime_utc '2024-11-06 00:38:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 5XGK # _exptl.entry_id 5XGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.1 _cell.angle_gamma 90 _cell.entry_id 5XGK _cell.length_a 95.606 _cell.length_b 95.294 _cell.length_c 98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,N,O 1 1 C,D,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 401 A CYS 401 1_555 A SG CYS 416 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 401 B CYS 401 1_555 B SG CYS 416 B CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 401 C CYS 401 1_555 C SG CYS 416 C CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 401 D CYS 401 1_555 D SG CYS 416 D CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 A NE2 HIS 226 A HIS 226 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc2 A NE2 HIS 308 A HIS 308 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 A OE1 GLU 394 A GLU 394 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 E OXT TYF . A TYF 501 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc5 E O4 TYF . A TYF 501 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc6 F FE FE . A FE 502 1_555 N O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc7 B NE2 HIS 226 B HIS 226 1_555 I FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc8 B NE2 HIS 308 B HIS 308 1_555 I FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc9 B OE1 GLU 394 B GLU 394 1_555 I FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc10 C NE2 HIS 226 C HIS 226 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc11 C NE2 HIS 308 C HIS 308 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc12 C OE1 GLU 394 C GLU 394 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc13 K FE FE . C FE 501 1_555 P O HOH . C HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc14 D NE2 HIS 226 D HIS 226 1_555 L FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc15 D NE2 HIS 308 D HIS 308 1_555 L FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc16 D OE1 GLU 394 D GLU 394 1_555 L FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc17 L FE FE . D FE 501 1_555 Q O HOH . D HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XGK _atom_sites.fract_transf_matrix[1][1] 0.01046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000384 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TYF A 1 501 500 TYF HPP . F 3 FE A 1 502 501 FE FE . G 4 ACT A 1 503 1 ACT AC . H 4 ACT A 1 504 3 ACT AC . I 3 FE B 1 501 501 FE FE . J 4 ACT B 1 502 4 ACT AC . K 3 FE C 1 501 501 FE FE . L 3 FE D 1 501 501 FE FE . M 4 ACT D 1 502 2 ACT AC . N 5 HOH A 1 601 304 HOH HOH . N 5 HOH A 2 602 212 HOH HOH . N 5 HOH A 3 603 101 HOH HOH . N 5 HOH A 4 604 217 HOH HOH . N 5 HOH A 5 605 213 HOH HOH . N 5 HOH A 6 606 51 HOH HOH . N 5 HOH A 7 607 295 HOH HOH . N 5 HOH A 8 608 174 HOH HOH . N 5 HOH A 9 609 169 HOH HOH . N 5 HOH A 10 610 22 HOH HOH . N 5 HOH A 11 611 106 HOH HOH . N 5 HOH A 12 612 205 HOH HOH . N 5 HOH A 13 613 64 HOH HOH . N 5 HOH A 14 614 25 HOH HOH . N 5 HOH A 15 615 206 HOH HOH . N 5 HOH A 16 616 219 HOH HOH . N 5 HOH A 17 617 225 HOH HOH . N 5 HOH A 18 618 63 HOH HOH . N 5 HOH A 19 619 168 HOH HOH . N 5 HOH A 20 620 181 HOH HOH . N 5 HOH A 21 621 127 HOH HOH . N 5 HOH A 22 622 137 HOH HOH . N 5 HOH A 23 623 290 HOH HOH . N 5 HOH A 24 624 297 HOH HOH . N 5 HOH A 25 625 171 HOH HOH . N 5 HOH A 26 626 165 HOH HOH . N 5 HOH A 27 627 13 HOH HOH . N 5 HOH A 28 628 44 HOH HOH . N 5 HOH A 29 629 1 HOH HOH . N 5 HOH A 30 630 81 HOH HOH . N 5 HOH A 31 631 129 HOH HOH . N 5 HOH A 32 632 42 HOH HOH . N 5 HOH A 33 633 17 HOH HOH . N 5 HOH A 34 634 29 HOH HOH . N 5 HOH A 35 635 38 HOH HOH . N 5 HOH A 36 636 48 HOH HOH . N 5 HOH A 37 637 130 HOH HOH . N 5 HOH A 38 638 98 HOH HOH . N 5 HOH A 39 639 18 HOH HOH . N 5 HOH A 40 640 292 HOH HOH . N 5 HOH A 41 641 218 HOH HOH . N 5 HOH A 42 642 161 HOH HOH . N 5 HOH A 43 643 4 HOH HOH . N 5 HOH A 44 644 296 HOH HOH . N 5 HOH A 45 645 172 HOH HOH . N 5 HOH A 46 646 210 HOH HOH . N 5 HOH A 47 647 89 HOH HOH . N 5 HOH A 48 648 173 HOH HOH . N 5 HOH A 49 649 294 HOH HOH . N 5 HOH A 50 650 111 HOH HOH . N 5 HOH A 51 651 207 HOH HOH . N 5 HOH A 52 652 221 HOH HOH . N 5 HOH A 53 653 247 HOH HOH . N 5 HOH A 54 654 179 HOH HOH . N 5 HOH A 55 655 170 HOH HOH . N 5 HOH A 56 656 226 HOH HOH . N 5 HOH A 57 657 272 HOH HOH . N 5 HOH A 58 658 285 HOH HOH . N 5 HOH A 59 659 220 HOH HOH . N 5 HOH A 60 660 176 HOH HOH . N 5 HOH A 61 661 214 HOH HOH . N 5 HOH A 62 662 268 HOH HOH . N 5 HOH A 63 663 269 HOH HOH . O 5 HOH B 1 601 99 HOH HOH . O 5 HOH B 2 602 183 HOH HOH . O 5 HOH B 3 603 72 HOH HOH . O 5 HOH B 4 604 182 HOH HOH . O 5 HOH B 5 605 298 HOH HOH . O 5 HOH B 6 606 233 HOH HOH . O 5 HOH B 7 607 3 HOH HOH . O 5 HOH B 8 608 184 HOH HOH . O 5 HOH B 9 609 228 HOH HOH . O 5 HOH B 10 610 148 HOH HOH . O 5 HOH B 11 611 186 HOH HOH . O 5 HOH B 12 612 9 HOH HOH . O 5 HOH B 13 613 110 HOH HOH . O 5 HOH B 14 614 103 HOH HOH . O 5 HOH B 15 615 276 HOH HOH . O 5 HOH B 16 616 57 HOH HOH . O 5 HOH B 17 617 116 HOH HOH . O 5 HOH B 18 618 95 HOH HOH . O 5 HOH B 19 619 84 HOH HOH . O 5 HOH B 20 620 273 HOH HOH . O 5 HOH B 21 621 123 HOH HOH . O 5 HOH B 22 622 211 HOH HOH . O 5 HOH B 23 623 119 HOH HOH . O 5 HOH B 24 624 76 HOH HOH . O 5 HOH B 25 625 31 HOH HOH . O 5 HOH B 26 626 151 HOH HOH . O 5 HOH B 27 627 2 HOH HOH . O 5 HOH B 28 628 75 HOH HOH . O 5 HOH B 29 629 234 HOH HOH . O 5 HOH B 30 630 94 HOH HOH . O 5 HOH B 31 631 109 HOH HOH . O 5 HOH B 32 632 231 HOH HOH . O 5 HOH B 33 633 180 HOH HOH . O 5 HOH B 34 634 80 HOH HOH . O 5 HOH B 35 635 120 HOH HOH . O 5 HOH B 36 636 284 HOH HOH . O 5 HOH B 37 637 232 HOH HOH . O 5 HOH B 38 638 230 HOH HOH . O 5 HOH B 39 639 229 HOH HOH . O 5 HOH B 40 640 271 HOH HOH . P 5 HOH C 1 601 244 HOH HOH . P 5 HOH C 2 602 277 HOH HOH . P 5 HOH C 3 603 246 HOH HOH . P 5 HOH C 4 604 248 HOH HOH . P 5 HOH C 5 605 238 HOH HOH . P 5 HOH C 6 606 189 HOH HOH . P 5 HOH C 7 607 30 HOH HOH . P 5 HOH C 8 608 5 HOH HOH . P 5 HOH C 9 609 85 HOH HOH . P 5 HOH C 10 610 20 HOH HOH . P 5 HOH C 11 611 147 HOH HOH . P 5 HOH C 12 612 156 HOH HOH . P 5 HOH C 13 613 209 HOH HOH . P 5 HOH C 14 614 143 HOH HOH . P 5 HOH C 15 615 243 HOH HOH . P 5 HOH C 16 616 192 HOH HOH . P 5 HOH C 17 617 43 HOH HOH . P 5 HOH C 18 618 286 HOH HOH . P 5 HOH C 19 619 91 HOH HOH . P 5 HOH C 20 620 149 HOH HOH . P 5 HOH C 21 621 239 HOH HOH . P 5 HOH C 22 622 53 HOH HOH . P 5 HOH C 23 623 236 HOH HOH . P 5 HOH C 24 624 24 HOH HOH . P 5 HOH C 25 625 11 HOH HOH . P 5 HOH C 26 626 115 HOH HOH . P 5 HOH C 27 627 299 HOH HOH . P 5 HOH C 28 628 187 HOH HOH . P 5 HOH C 29 629 280 HOH HOH . P 5 HOH C 30 630 67 HOH HOH . P 5 HOH C 31 631 125 HOH HOH . P 5 HOH C 32 632 237 HOH HOH . P 5 HOH C 33 633 278 HOH HOH . P 5 HOH C 34 634 142 HOH HOH . P 5 HOH C 35 635 82 HOH HOH . P 5 HOH C 36 636 90 HOH HOH . P 5 HOH C 37 637 122 HOH HOH . P 5 HOH C 38 638 126 HOH HOH . P 5 HOH C 39 639 113 HOH HOH . P 5 HOH C 40 640 52 HOH HOH . P 5 HOH C 41 641 223 HOH HOH . P 5 HOH C 42 642 23 HOH HOH . P 5 HOH C 43 643 135 HOH HOH . P 5 HOH C 44 644 288 HOH HOH . P 5 HOH C 45 645 279 HOH HOH . P 5 HOH C 46 646 289 HOH HOH . P 5 HOH C 47 647 222 HOH HOH . P 5 HOH C 48 648 188 HOH HOH . P 5 HOH C 49 649 241 HOH HOH . P 5 HOH C 50 650 287 HOH HOH . P 5 HOH C 51 651 242 HOH HOH . Q 5 HOH D 1 601 69 HOH HOH . Q 5 HOH D 2 602 131 HOH HOH . Q 5 HOH D 3 603 196 HOH HOH . Q 5 HOH D 4 604 203 HOH HOH . Q 5 HOH D 5 605 257 HOH HOH . Q 5 HOH D 6 606 150 HOH HOH . Q 5 HOH D 7 607 282 HOH HOH . Q 5 HOH D 8 608 55 HOH HOH . Q 5 HOH D 9 609 154 HOH HOH . Q 5 HOH D 10 610 194 HOH HOH . Q 5 HOH D 11 611 47 HOH HOH . Q 5 HOH D 12 612 138 HOH HOH . Q 5 HOH D 13 613 121 HOH HOH . Q 5 HOH D 14 614 164 HOH HOH . Q 5 HOH D 15 615 252 HOH HOH . Q 5 HOH D 16 616 258 HOH HOH . Q 5 HOH D 17 617 195 HOH HOH . Q 5 HOH D 18 618 28 HOH HOH . Q 5 HOH D 19 619 251 HOH HOH . Q 5 HOH D 20 620 140 HOH HOH . Q 5 HOH D 21 621 253 HOH HOH . Q 5 HOH D 22 622 65 HOH HOH . Q 5 HOH D 23 623 40 HOH HOH . Q 5 HOH D 24 624 145 HOH HOH . Q 5 HOH D 25 625 97 HOH HOH . Q 5 HOH D 26 626 6 HOH HOH . Q 5 HOH D 27 627 34 HOH HOH . Q 5 HOH D 28 628 16 HOH HOH . Q 5 HOH D 29 629 19 HOH HOH . Q 5 HOH D 30 630 254 HOH HOH . Q 5 HOH D 31 631 157 HOH HOH . Q 5 HOH D 32 632 141 HOH HOH . Q 5 HOH D 33 633 10 HOH HOH . Q 5 HOH D 34 634 240 HOH HOH . Q 5 HOH D 35 635 117 HOH HOH . Q 5 HOH D 36 636 100 HOH HOH . Q 5 HOH D 37 637 155 HOH HOH . Q 5 HOH D 38 638 60 HOH HOH . Q 5 HOH D 39 639 68 HOH HOH . Q 5 HOH D 40 640 197 HOH HOH . Q 5 HOH D 41 641 208 HOH HOH . Q 5 HOH D 42 642 61 HOH HOH . Q 5 HOH D 43 643 259 HOH HOH . Q 5 HOH D 44 644 12 HOH HOH . Q 5 HOH D 45 645 255 HOH HOH . Q 5 HOH D 46 646 77 HOH HOH . Q 5 HOH D 47 647 281 HOH HOH . Q 5 HOH D 48 648 33 HOH HOH . Q 5 HOH D 49 649 167 HOH HOH . Q 5 HOH D 50 650 50 HOH HOH . Q 5 HOH D 51 651 39 HOH HOH . Q 5 HOH D 52 652 283 HOH HOH . Q 5 HOH D 53 653 59 HOH HOH . Q 5 HOH D 54 654 204 HOH HOH . Q 5 HOH D 55 655 264 HOH HOH . Q 5 HOH D 56 656 302 HOH HOH . Q 5 HOH D 57 657 256 HOH HOH . Q 5 HOH D 58 658 301 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x -48.315 _atom_site.Cartn_y 8.716 _atom_site.Cartn_z 43.384 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 501 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #