data_5XGM # _model_server_result.job_id '_EjncKa-wEqcgFzoi6sS9Q' _model_server_result.datetime_utc '2024-12-26 14:21:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5XGM # _exptl.entry_id 5XGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.426 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 12-(2-Cyanoethyl)-6,7,12,13-tetrahydro-13-methyl-5-oxo-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XGM _cell.length_a 146.31 _cell.length_b 146.31 _cell.length_c 146.31 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H18 N4 O' _chem_comp.formula_weight 378.426 _chem_comp.id 85X _chem_comp.mon_nstd_flag . _chem_comp.name 12-(2-Cyanoethyl)-6,7,12,13-tetrahydro-13-methyl-5-oxo-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Go 6976' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAB CAD 85X trip 1 n n CAH CAF 85X doub 2 n y CAH CAL 85X sing 3 n y CAF CAJ 85X sing 4 n y CAD CAM 85X sing 5 n n CAL CAW 85X doub 6 n y CAJ CAU 85X doub 7 n y CAW CAU 85X sing 8 n y CAW NBC 85X sing 9 n y CAU CAX 85X sing 10 n y CAM CAO 85X sing 11 n n NBC CAO 85X sing 12 n n NBC CBA 85X sing 13 n y CAX CBA 85X doub 14 n y CAX CAR 85X sing 15 n y CAN CAR 85X sing 16 n n CAN NAP 85X sing 17 n n CBA CAZ 85X sing 18 n y CAR CAS 85X doub 19 n y NAP CAQ 85X sing 20 n n CAZ CAY 85X doub 21 n y CAZ NBB 85X sing 22 n y CAS CAQ 85X sing 23 n n CAS CAY 85X sing 24 n y CAA NBB 85X sing 25 n n CAQ OAC 85X doub 26 n n CAY CAT 85X sing 27 n y NBB CAV 85X sing 28 n y CAT CAV 85X doub 29 n y CAT CAI 85X sing 30 n y CAV CAK 85X sing 31 n y CAI CAE 85X doub 32 n y CAK CAG 85X doub 33 n y CAE CAG 85X sing 34 n y CAN H1 85X sing 35 n n CAI H2 85X sing 36 n n CAE H3 85X sing 37 n n CAG H4 85X sing 38 n n CAK H5 85X sing 39 n n CAA H6 85X sing 40 n n CAA H7 85X sing 41 n n CAA H8 85X sing 42 n n CAJ H9 85X sing 43 n n CAF H10 85X sing 44 n n CAH H11 85X sing 45 n n CAL H12 85X sing 46 n n CAO H13 85X sing 47 n n CAO H14 85X sing 48 n n CAM H15 85X sing 49 n n CAM H16 85X sing 50 n n NAP H17 85X sing 51 n n CAN H18 85X sing 52 n n # _atom_sites.entry_id 5XGM _atom_sites.fract_transf_matrix[1][1] 0.006835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 85X A 1 1101 1 85X 85X . C 3 HOH A 1 1201 10 HOH HOH . C 3 HOH A 2 1202 29 HOH HOH . C 3 HOH A 3 1203 19 HOH HOH . C 3 HOH A 4 1204 11 HOH HOH . C 3 HOH A 5 1205 27 HOH HOH . C 3 HOH A 6 1206 22 HOH HOH . C 3 HOH A 7 1207 26 HOH HOH . C 3 HOH A 8 1208 5 HOH HOH . C 3 HOH A 9 1209 8 HOH HOH . C 3 HOH A 10 1210 13 HOH HOH . C 3 HOH A 11 1211 16 HOH HOH . C 3 HOH A 12 1212 25 HOH HOH . C 3 HOH A 13 1213 9 HOH HOH . C 3 HOH A 14 1214 2 HOH HOH . C 3 HOH A 15 1215 4 HOH HOH . C 3 HOH A 16 1216 14 HOH HOH . C 3 HOH A 17 1217 12 HOH HOH . C 3 HOH A 18 1218 7 HOH HOH . C 3 HOH A 19 1219 1 HOH HOH . C 3 HOH A 20 1220 6 HOH HOH . C 3 HOH A 21 1221 21 HOH HOH . C 3 HOH A 22 1222 17 HOH HOH . C 3 HOH A 23 1223 24 HOH HOH . C 3 HOH A 24 1224 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 85X . . . B 2 -53.955 2.071 -21.384 0.78 58.77 ? OAC 85X 1101 A 1 HETATM 2 C CAQ 85X . . . B 2 -53.356 1.668 -22.374 0.78 69.81 ? CAQ 85X 1101 A 1 HETATM 3 N NAP 85X . . . B 2 -53.772 1.866 -23.609 0.78 64.32 ? NAP 85X 1101 A 1 HETATM 4 C CAN 85X . . . B 2 -52.768 1.242 -24.469 0.78 72.52 ? CAN 85X 1101 A 1 HETATM 5 C CAR 85X . . . B 2 -51.827 0.734 -23.588 0.78 77.33 ? CAR 85X 1101 A 1 HETATM 6 C CAS 85X . . . B 2 -52.206 1 -22.337 0.78 75.67 ? CAS 85X 1101 A 1 HETATM 7 C CAY 85X . . . B 2 -51.444 0.6 -21.32 0.78 77.43 ? CAY 85X 1101 A 1 HETATM 8 C CAT 85X . . . B 2 -51.565 0.72 -20.001 0.78 73.35 ? CAT 85X 1101 A 1 HETATM 9 C CAI 85X . . . B 2 -52.504 1.292 -19.259 0.78 62.93 ? CAI 85X 1101 A 1 HETATM 10 C CAE 85X . . . B 2 -52.406 1.292 -17.879 0.78 53.74 ? CAE 85X 1101 A 1 HETATM 11 C CAG 85X . . . B 2 -51.315 0.683 -17.293 0.78 58.94 ? CAG 85X 1101 A 1 HETATM 12 C CAK 85X . . . B 2 -50.368 0.098 -18.114 0.78 64.86 ? CAK 85X 1101 A 1 HETATM 13 C CAV 85X . . . B 2 -50.513 0.131 -19.432 0.78 76.24 ? CAV 85X 1101 A 1 HETATM 14 N NBB 85X . . . B 2 -49.746 -0.347 -20.399 0.78 81.82 ? NBB 85X 1101 A 1 HETATM 15 C CAA 85X . . . B 2 -48.476 -1.075 -20.238 0.78 72.85 ? CAA 85X 1101 A 1 HETATM 16 C CAZ 85X . . . B 2 -50.317 -0.06 -21.558 0.78 83.41 ? CAZ 85X 1101 A 1 HETATM 17 C CBA 85X . . . B 2 -49.946 -0.323 -22.798 0.78 88.22 ? CBA 85X 1101 A 1 HETATM 18 C CAX 85X . . . B 2 -50.699 0.071 -23.814 0.78 86.24 ? CAX 85X 1101 A 1 HETATM 19 C CAU 85X . . . B 2 -50.1 -0.317 -24.937 0.78 94.72 ? CAU 85X 1101 A 1 HETATM 20 C CAJ 85X . . . B 2 -50.445 -0.166 -26.214 0.78 92.22 ? CAJ 85X 1101 A 1 HETATM 21 C CAF 85X . . . B 2 -49.642 -0.669 -27.227 0.78 86.39 ? CAF 85X 1101 A 1 HETATM 22 C CAH 85X . . . B 2 -48.477 -1.328 -26.878 0.78 85.09 ? CAH 85X 1101 A 1 HETATM 23 C CAL 85X . . . B 2 -48.171 -1.456 -25.534 0.78 90.1 ? CAL 85X 1101 A 1 HETATM 24 C CAW 85X . . . B 2 -48.977 -0.953 -24.606 0.78 94.89 ? CAW 85X 1101 A 1 HETATM 25 N NBC 85X . . . B 2 -48.887 -0.954 -23.284 0.78 94.37 ? NBC 85X 1101 A 1 HETATM 26 C CAO 85X . . . B 2 -47.793 -1.561 -22.5 0.78 92.02 ? CAO 85X 1101 A 1 HETATM 27 C CAM 85X . . . B 2 -47.501 -2.982 -22.998 0.78 88.33 ? CAM 85X 1101 A 1 HETATM 28 C CAD 85X . . . B 2 -47.521 -3.928 -21.872 0.78 93.62 ? CAD 85X 1101 A 1 HETATM 29 N NAB 85X . . . B 2 -47.535 -4.653 -21.005 0.78 93.72 ? NAB 85X 1101 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #