data_5XGN # _model_server_result.job_id pZQF4ONqkSz5Jy09r6bR3Q _model_server_result.datetime_utc '2025-01-02 17:45:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 5XGN # _exptl.entry_id 5XGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.426 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 12-(2-Cyanoethyl)-6,7,12,13-tetrahydro-13-methyl-5-oxo-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XGN _cell.length_a 49.434 _cell.length_b 90.509 _cell.length_c 164.223 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H18 N4 O' _chem_comp.formula_weight 378.426 _chem_comp.id 85X _chem_comp.mon_nstd_flag . _chem_comp.name 12-(2-Cyanoethyl)-6,7,12,13-tetrahydro-13-methyl-5-oxo-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Go 6976' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAB CAD 85X trip 1 n n CAH CAF 85X doub 2 n y CAH CAL 85X sing 3 n y CAF CAJ 85X sing 4 n y CAD CAM 85X sing 5 n n CAL CAW 85X doub 6 n y CAJ CAU 85X doub 7 n y CAW CAU 85X sing 8 n y CAW NBC 85X sing 9 n y CAU CAX 85X sing 10 n y CAM CAO 85X sing 11 n n NBC CAO 85X sing 12 n n NBC CBA 85X sing 13 n y CAX CBA 85X doub 14 n y CAX CAR 85X sing 15 n y CAN CAR 85X sing 16 n n CAN NAP 85X sing 17 n n CBA CAZ 85X sing 18 n y CAR CAS 85X doub 19 n y NAP CAQ 85X sing 20 n n CAZ CAY 85X doub 21 n y CAZ NBB 85X sing 22 n y CAS CAQ 85X sing 23 n n CAS CAY 85X sing 24 n y CAA NBB 85X sing 25 n n CAQ OAC 85X doub 26 n n CAY CAT 85X sing 27 n y NBB CAV 85X sing 28 n y CAT CAV 85X doub 29 n y CAT CAI 85X sing 30 n y CAV CAK 85X sing 31 n y CAI CAE 85X doub 32 n y CAK CAG 85X doub 33 n y CAE CAG 85X sing 34 n y CAN H1 85X sing 35 n n CAI H2 85X sing 36 n n CAE H3 85X sing 37 n n CAG H4 85X sing 38 n n CAK H5 85X sing 39 n n CAA H6 85X sing 40 n n CAA H7 85X sing 41 n n CAA H8 85X sing 42 n n CAJ H9 85X sing 43 n n CAF H10 85X sing 44 n n CAH H11 85X sing 45 n n CAL H12 85X sing 46 n n CAO H13 85X sing 47 n n CAO H14 85X sing 48 n n CAM H15 85X sing 49 n n CAM H16 85X sing 50 n n NAP H17 85X sing 51 n n CAN H18 85X sing 52 n n # _atom_sites.entry_id 5XGN _atom_sites.fract_transf_matrix[1][1] 0.020229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011049 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 85X A 1 1101 1 85X DRG . D 3 CL B 1 1101 1 CL CL . E 3 CL B 1 1102 1 CL CL . F 4 HOH A 1 1201 36 HOH HOH . F 4 HOH A 2 1202 4 HOH HOH . F 4 HOH A 3 1203 38 HOH HOH . F 4 HOH A 4 1204 57 HOH HOH . F 4 HOH A 5 1205 25 HOH HOH . F 4 HOH A 6 1206 28 HOH HOH . F 4 HOH A 7 1207 2 HOH HOH . F 4 HOH A 8 1208 32 HOH HOH . F 4 HOH A 9 1209 39 HOH HOH . F 4 HOH A 10 1210 34 HOH HOH . F 4 HOH A 11 1211 31 HOH HOH . F 4 HOH A 12 1212 29 HOH HOH . F 4 HOH A 13 1213 8 HOH HOH . F 4 HOH A 14 1214 24 HOH HOH . F 4 HOH A 15 1215 10 HOH HOH . F 4 HOH A 16 1216 26 HOH HOH . F 4 HOH A 17 1217 35 HOH HOH . F 4 HOH A 18 1218 12 HOH HOH . F 4 HOH A 19 1219 58 HOH HOH . F 4 HOH A 20 1220 33 HOH HOH . F 4 HOH A 21 1221 9 HOH HOH . F 4 HOH A 22 1222 27 HOH HOH . F 4 HOH A 23 1223 6 HOH HOH . F 4 HOH A 24 1224 37 HOH HOH . G 4 HOH B 1 1201 17 HOH HOH . G 4 HOH B 2 1202 51 HOH HOH . G 4 HOH B 3 1203 41 HOH HOH . G 4 HOH B 4 1204 11 HOH HOH . G 4 HOH B 5 1205 46 HOH HOH . G 4 HOH B 6 1206 42 HOH HOH . G 4 HOH B 7 1207 48 HOH HOH . G 4 HOH B 8 1208 56 HOH HOH . G 4 HOH B 9 1209 5 HOH HOH . G 4 HOH B 10 1210 7 HOH HOH . G 4 HOH B 11 1211 47 HOH HOH . G 4 HOH B 12 1212 55 HOH HOH . G 4 HOH B 13 1213 20 HOH HOH . G 4 HOH B 14 1214 53 HOH HOH . G 4 HOH B 15 1215 16 HOH HOH . G 4 HOH B 16 1216 3 HOH HOH . G 4 HOH B 17 1217 15 HOH HOH . G 4 HOH B 18 1218 50 HOH HOH . G 4 HOH B 19 1219 40 HOH HOH . G 4 HOH B 20 1220 44 HOH HOH . G 4 HOH B 21 1221 43 HOH HOH . G 4 HOH B 22 1222 45 HOH HOH . G 4 HOH B 23 1223 22 HOH HOH . G 4 HOH B 24 1224 54 HOH HOH . G 4 HOH B 25 1225 18 HOH HOH . G 4 HOH B 26 1226 14 HOH HOH . G 4 HOH B 27 1227 30 HOH HOH . G 4 HOH B 28 1228 52 HOH HOH . G 4 HOH B 29 1229 21 HOH HOH . G 4 HOH B 30 1230 23 HOH HOH . G 4 HOH B 31 1231 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 85X . . . C 2 7.714 27.003 195.925 0.93 75.66 ? OAC 85X 1101 A 1 HETATM 2 C CAQ 85X . . . C 2 7.981 25.96 195.335 0.93 74.23 ? CAQ 85X 1101 A 1 HETATM 3 N NAP 85X . . . C 2 7.088 25.1 194.879 0.93 67.56 ? NAP 85X 1101 A 1 HETATM 4 C CAN 85X . . . C 2 7.859 24.016 194.267 0.93 67.94 ? CAN 85X 1101 A 1 HETATM 5 C CAR 85X . . . C 2 9.183 24.391 194.46 0.93 71.6 ? CAR 85X 1101 A 1 HETATM 6 C CAS 85X . . . C 2 9.216 25.555 195.099 0.93 74.91 ? CAS 85X 1101 A 1 HETATM 7 C CAY 85X . . . C 2 10.376 26.115 195.394 0.93 75.83 ? CAY 85X 1101 A 1 HETATM 8 C CAT 85X . . . C 2 10.669 27.246 196.012 0.93 71.67 ? CAT 85X 1101 A 1 HETATM 9 C CAI 85X . . . C 2 9.876 28.174 196.528 0.93 65.28 ? CAI 85X 1101 A 1 HETATM 10 C CAE 85X . . . C 2 10.427 29.289 197.133 0.93 64.99 ? CAE 85X 1101 A 1 HETATM 11 C CAG 85X . . . C 2 11.806 29.401 197.18 0.93 67.38 ? CAG 85X 1101 A 1 HETATM 12 C CAK 85X . . . C 2 12.579 28.397 196.623 0.93 66.73 ? CAK 85X 1101 A 1 HETATM 13 C CAV 85X . . . C 2 11.993 27.354 196.058 0.93 73.6 ? CAV 85X 1101 A 1 HETATM 14 N NBB 85X . . . C 2 12.506 26.288 195.469 0.93 79.89 ? NBB 85X 1101 A 1 HETATM 15 C CAA 85X . . . C 2 13.937 26.019 195.305 0.93 81.85 ? CAA 85X 1101 A 1 HETATM 16 C CAZ 85X . . . C 2 11.509 25.523 195.059 0.93 77.44 ? CAZ 85X 1101 A 1 HETATM 17 C CBA 85X . . . C 2 11.481 24.367 194.423 0.93 77.32 ? CBA 85X 1101 A 1 HETATM 18 C CAX 85X . . . C 2 10.323 23.8 194.125 0.93 74.39 ? CAX 85X 1101 A 1 HETATM 19 C CAU 85X . . . C 2 10.578 22.664 193.497 0.93 76.17 ? CAU 85X 1101 A 1 HETATM 20 C CAJ 85X . . . C 2 9.767 21.743 193 0.93 78.05 ? CAJ 85X 1101 A 1 HETATM 21 C CAF 85X . . . C 2 10.285 20.621 192.377 0.93 79.69 ? CAF 85X 1101 A 1 HETATM 22 C CAH 85X . . . C 2 11.658 20.485 192.289 0.93 79.18 ? CAH 85X 1101 A 1 HETATM 23 C CAL 85X . . . C 2 12.449 21.48 192.828 0.93 76.69 ? CAL 85X 1101 A 1 HETATM 24 C CAW 85X . . . C 2 11.893 22.53 193.41 0.93 77.27 ? CAW 85X 1101 A 1 HETATM 25 N NBC 85X . . . C 2 12.445 23.581 193.983 0.93 80.48 ? NBC 85X 1101 A 1 HETATM 26 C CAO 85X . . . C 2 13.897 23.773 194.071 0.93 84.84 ? CAO 85X 1101 A 1 HETATM 27 C CAM 85X . . . C 2 14.626 22.472 193.718 0.93 90.46 ? CAM 85X 1101 A 1 HETATM 28 C CAD 85X . . . C 2 15.403 22.622 192.468 0.93 89.79 ? CAD 85X 1101 A 1 HETATM 29 N NAB 85X . . . C 2 16.001 22.723 191.512 0.93 81.74 ? NAB 85X 1101 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #