data_5XH9 # _model_server_result.job_id 6wvJyKI5jNHY4aIAHvFk3g _model_server_result.datetime_utc '2024-12-20 10:59:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5XH9 # _exptl.entry_id 5XH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XH9 _cell.length_a 108.786 _cell.length_b 108.786 _cell.length_c 153.196 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 102.130667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O HIS 287 A HIS 310 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A O GLY 315 A GLY 338 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A O PHE 316 A PHE 339 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc4 A O SER 318 A SER 341 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc5 B NA NA . A NA 701 1_555 C O HOH . A HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc6 B NA NA . A NA 701 1_555 C O HOH . A HOH 964 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XH9 _atom_sites.fract_transf_matrix[1][1] 0.009192 _atom_sites.fract_transf_matrix[1][2] 0.005307 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 701 651 NA NA . C 3 HOH A 1 801 109 HOH HOH . C 3 HOH A 2 802 166 HOH HOH . C 3 HOH A 3 803 152 HOH HOH . C 3 HOH A 4 804 79 HOH HOH . C 3 HOH A 5 805 113 HOH HOH . C 3 HOH A 6 806 44 HOH HOH . C 3 HOH A 7 807 86 HOH HOH . C 3 HOH A 8 808 157 HOH HOH . C 3 HOH A 9 809 62 HOH HOH . C 3 HOH A 10 810 102 HOH HOH . C 3 HOH A 11 811 115 HOH HOH . C 3 HOH A 12 812 106 HOH HOH . C 3 HOH A 13 813 130 HOH HOH . C 3 HOH A 14 814 73 HOH HOH . C 3 HOH A 15 815 100 HOH HOH . C 3 HOH A 16 816 14 HOH HOH . C 3 HOH A 17 817 75 HOH HOH . C 3 HOH A 18 818 17 HOH HOH . C 3 HOH A 19 819 160 HOH HOH . C 3 HOH A 20 820 29 HOH HOH . C 3 HOH A 21 821 67 HOH HOH . C 3 HOH A 22 822 165 HOH HOH . C 3 HOH A 23 823 155 HOH HOH . C 3 HOH A 24 824 89 HOH HOH . C 3 HOH A 25 825 184 HOH HOH . C 3 HOH A 26 826 125 HOH HOH . C 3 HOH A 27 827 101 HOH HOH . C 3 HOH A 28 828 135 HOH HOH . C 3 HOH A 29 829 56 HOH HOH . C 3 HOH A 30 830 53 HOH HOH . C 3 HOH A 31 831 9 HOH HOH . C 3 HOH A 32 832 52 HOH HOH . C 3 HOH A 33 833 186 HOH HOH . C 3 HOH A 34 834 7 HOH HOH . C 3 HOH A 35 835 181 HOH HOH . C 3 HOH A 36 836 70 HOH HOH . C 3 HOH A 37 837 76 HOH HOH . C 3 HOH A 38 838 99 HOH HOH . C 3 HOH A 39 839 20 HOH HOH . C 3 HOH A 40 840 43 HOH HOH . C 3 HOH A 41 841 42 HOH HOH . C 3 HOH A 42 842 8 HOH HOH . C 3 HOH A 43 843 18 HOH HOH . C 3 HOH A 44 844 131 HOH HOH . C 3 HOH A 45 845 1 HOH HOH . C 3 HOH A 46 846 34 HOH HOH . C 3 HOH A 47 847 119 HOH HOH . C 3 HOH A 48 848 30 HOH HOH . C 3 HOH A 49 849 96 HOH HOH . C 3 HOH A 50 850 54 HOH HOH . C 3 HOH A 51 851 159 HOH HOH . C 3 HOH A 52 852 138 HOH HOH . C 3 HOH A 53 853 172 HOH HOH . C 3 HOH A 54 854 3 HOH HOH . C 3 HOH A 55 855 94 HOH HOH . C 3 HOH A 56 856 6 HOH HOH . C 3 HOH A 57 857 4 HOH HOH . C 3 HOH A 58 858 126 HOH HOH . C 3 HOH A 59 859 48 HOH HOH . C 3 HOH A 60 860 49 HOH HOH . C 3 HOH A 61 861 85 HOH HOH . C 3 HOH A 62 862 95 HOH HOH . C 3 HOH A 63 863 32 HOH HOH . C 3 HOH A 64 864 163 HOH HOH . C 3 HOH A 65 865 63 HOH HOH . C 3 HOH A 66 866 59 HOH HOH . C 3 HOH A 67 867 179 HOH HOH . C 3 HOH A 68 868 72 HOH HOH . C 3 HOH A 69 869 137 HOH HOH . C 3 HOH A 70 870 110 HOH HOH . C 3 HOH A 71 871 82 HOH HOH . C 3 HOH A 72 872 26 HOH HOH . C 3 HOH A 73 873 15 HOH HOH . C 3 HOH A 74 874 19 HOH HOH . C 3 HOH A 75 875 107 HOH HOH . C 3 HOH A 76 876 58 HOH HOH . C 3 HOH A 77 877 23 HOH HOH . C 3 HOH A 78 878 153 HOH HOH . C 3 HOH A 79 879 136 HOH HOH . C 3 HOH A 80 880 40 HOH HOH . C 3 HOH A 81 881 27 HOH HOH . C 3 HOH A 82 882 129 HOH HOH . C 3 HOH A 83 883 169 HOH HOH . C 3 HOH A 84 884 83 HOH HOH . C 3 HOH A 85 885 80 HOH HOH . C 3 HOH A 86 886 132 HOH HOH . C 3 HOH A 87 887 11 HOH HOH . C 3 HOH A 88 888 45 HOH HOH . C 3 HOH A 89 889 31 HOH HOH . C 3 HOH A 90 890 167 HOH HOH . C 3 HOH A 91 891 133 HOH HOH . C 3 HOH A 92 892 143 HOH HOH . C 3 HOH A 93 893 122 HOH HOH . C 3 HOH A 94 894 77 HOH HOH . C 3 HOH A 95 895 144 HOH HOH . C 3 HOH A 96 896 2 HOH HOH . C 3 HOH A 97 897 37 HOH HOH . C 3 HOH A 98 898 108 HOH HOH . C 3 HOH A 99 899 5 HOH HOH . C 3 HOH A 100 900 124 HOH HOH . C 3 HOH A 101 901 139 HOH HOH . C 3 HOH A 102 902 36 HOH HOH . C 3 HOH A 103 903 104 HOH HOH . C 3 HOH A 104 904 151 HOH HOH . C 3 HOH A 105 905 154 HOH HOH . C 3 HOH A 106 906 12 HOH HOH . C 3 HOH A 107 907 10 HOH HOH . C 3 HOH A 108 908 140 HOH HOH . C 3 HOH A 109 909 25 HOH HOH . C 3 HOH A 110 910 22 HOH HOH . C 3 HOH A 111 911 87 HOH HOH . C 3 HOH A 112 912 176 HOH HOH . C 3 HOH A 113 913 142 HOH HOH . C 3 HOH A 114 914 51 HOH HOH . C 3 HOH A 115 915 158 HOH HOH . C 3 HOH A 116 916 50 HOH HOH . C 3 HOH A 117 917 35 HOH HOH . C 3 HOH A 118 918 164 HOH HOH . C 3 HOH A 119 919 98 HOH HOH . C 3 HOH A 120 920 91 HOH HOH . C 3 HOH A 121 921 84 HOH HOH . C 3 HOH A 122 922 46 HOH HOH . C 3 HOH A 123 923 68 HOH HOH . C 3 HOH A 124 924 24 HOH HOH . C 3 HOH A 125 925 41 HOH HOH . C 3 HOH A 126 926 146 HOH HOH . C 3 HOH A 127 927 38 HOH HOH . C 3 HOH A 128 928 149 HOH HOH . C 3 HOH A 129 929 39 HOH HOH . C 3 HOH A 130 930 145 HOH HOH . C 3 HOH A 131 931 81 HOH HOH . C 3 HOH A 132 932 21 HOH HOH . C 3 HOH A 133 933 16 HOH HOH . C 3 HOH A 134 934 60 HOH HOH . C 3 HOH A 135 935 13 HOH HOH . C 3 HOH A 136 936 61 HOH HOH . C 3 HOH A 137 937 112 HOH HOH . C 3 HOH A 138 938 148 HOH HOH . C 3 HOH A 139 939 71 HOH HOH . C 3 HOH A 140 940 33 HOH HOH . C 3 HOH A 141 941 117 HOH HOH . C 3 HOH A 142 942 141 HOH HOH . C 3 HOH A 143 943 182 HOH HOH . C 3 HOH A 144 944 161 HOH HOH . C 3 HOH A 145 945 173 HOH HOH . C 3 HOH A 146 946 64 HOH HOH . C 3 HOH A 147 947 74 HOH HOH . C 3 HOH A 148 948 123 HOH HOH . C 3 HOH A 149 949 103 HOH HOH . C 3 HOH A 150 950 174 HOH HOH . C 3 HOH A 151 951 69 HOH HOH . C 3 HOH A 152 952 116 HOH HOH . C 3 HOH A 153 953 128 HOH HOH . C 3 HOH A 154 954 156 HOH HOH . C 3 HOH A 155 955 65 HOH HOH . C 3 HOH A 156 956 57 HOH HOH . C 3 HOH A 157 957 177 HOH HOH . C 3 HOH A 158 958 78 HOH HOH . C 3 HOH A 159 959 66 HOH HOH . C 3 HOH A 160 960 185 HOH HOH . C 3 HOH A 161 961 105 HOH HOH . C 3 HOH A 162 962 47 HOH HOH . C 3 HOH A 163 963 28 HOH HOH . C 3 HOH A 164 964 121 HOH HOH . C 3 HOH A 165 965 180 HOH HOH . C 3 HOH A 166 966 55 HOH HOH . C 3 HOH A 167 967 183 HOH HOH . C 3 HOH A 168 968 127 HOH HOH . C 3 HOH A 169 969 175 HOH HOH . C 3 HOH A 170 970 114 HOH HOH . C 3 HOH A 171 971 178 HOH HOH . C 3 HOH A 172 972 111 HOH HOH . C 3 HOH A 173 973 88 HOH HOH . C 3 HOH A 174 974 97 HOH HOH . C 3 HOH A 175 975 150 HOH HOH . C 3 HOH A 176 976 147 HOH HOH . C 3 HOH A 177 977 118 HOH HOH . C 3 HOH A 178 978 134 HOH HOH . C 3 HOH A 179 979 162 HOH HOH . C 3 HOH A 180 980 90 HOH HOH . C 3 HOH A 181 981 171 HOH HOH . C 3 HOH A 182 982 92 HOH HOH . C 3 HOH A 183 983 93 HOH HOH . C 3 HOH A 184 984 120 HOH HOH . C 3 HOH A 185 985 168 HOH HOH . C 3 HOH A 186 986 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 42.432 _atom_site.Cartn_y -23.499 _atom_site.Cartn_z 27.99 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 538 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #