data_5XHC
#
_model_server_result.job_id            0x8ngjlJGR3-tvDdAplHUQ 
_model_server_result.datetime_utc      '2025-07-01 07:57:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xhc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    5XHC 
#
_exptl.entry_id    5XHC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XHC 
_cell.length_a            105.257 
_cell.length_b            157.885 
_cell.length_c            182.427 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XHC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 K N N 
? 7 Q N N 
? 7 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc7 G O2G GTP . A GTP 501 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc8 G O3G GTP . A GTP 501 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc9 G O2B GTP . A GTP 501 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc10 V O HOH . A HOH 606 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc11 V O HOH . A HOH 612 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc12 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc13 B OE1 GLU 111 B GLU 111 1_555 N CA CA . B CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc14 I MG MG . B MG 501 1_555 W O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc15 J O2A GDP . B GDP 502 1_555 K MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc16 K MG MG . B MG 503 1_555 W O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc17 K MG MG . B MG 503 1_555 W O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? 
metalc ? metalc18 K MG MG . B MG 503 1_555 X O HOH . C HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc19 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc20 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
metalc ? metalc21 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc22 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc23 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc24 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? 
metalc ? metalc25 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc26 P O3G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc27 P O2B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc28 Q MG MG . C MG 502 1_555 X O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc29 Q MG MG . C MG 502 1_555 X O HOH . C HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc30 Q MG MG . C MG 502 1_555 X O HOH . C HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc31 Q MG MG . C MG 502 1_555 X O HOH . C HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc32 S O2G GTP . D GTP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc33 S O3G GTP . D GTP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc34 S O2B GTP . D GTP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XHC 
_atom_sites.fract_transf_matrix[1][1]    0.009501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005482 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 CA A 1 502 503 CA CA . 
I 7 MG B 1 501 502 MG MG . 
J 8 GDP B 1 502 501 GDP GDP . 
K 7 MG B 1 503 502 MG MG . 
L 9 MES B 1 504 505 MES MES . 
M 10 87U B 1 505 1 87U P10 . 
N 6 CA B 1 506 2 CA CA . 
O 9 MES B 1 507 505 MES MES . 
P 5 GTP C 1 501 501 GTP GTP . 
Q 7 MG C 1 502 502 MG MG . 
R 6 CA C 1 503 1 CA CA . 
S 5 GTP D 1 501 501 GTP GTP . 
T 7 MG D 1 502 502 MG MG . 
U 11 ACP F 1 401 401 ACP ACP . 
V 12 HOH A 1 601 47 HOH HOH . 
V 12 HOH A 2 602 60 HOH HOH . 
V 12 HOH A 3 603 66 HOH HOH . 
V 12 HOH A 4 604 49 HOH HOH . 
V 12 HOH A 5 605 62 HOH HOH . 
V 12 HOH A 6 606 25 HOH HOH . 
V 12 HOH A 7 607 67 HOH HOH . 
V 12 HOH A 8 608 59 HOH HOH . 
V 12 HOH A 9 609 74 HOH HOH . 
V 12 HOH A 10 610 48 HOH HOH . 
V 12 HOH A 11 611 64 HOH HOH . 
V 12 HOH A 12 612 22 HOH HOH . 
V 12 HOH A 13 613 99 HOH HOH . 
V 12 HOH A 14 614 63 HOH HOH . 
V 12 HOH A 15 615 58 HOH HOH . 
V 12 HOH A 16 616 96 HOH HOH . 
V 12 HOH A 17 617 100 HOH HOH . 
V 12 HOH A 18 618 68 HOH HOH . 
V 12 HOH A 19 619 65 HOH HOH . 
V 12 HOH A 20 620 98 HOH HOH . 
W 12 HOH B 1 601 50 HOH HOH . 
W 12 HOH B 2 602 52 HOH HOH . 
W 12 HOH B 3 603 45 HOH HOH . 
W 12 HOH B 4 604 24 HOH HOH . 
W 12 HOH B 5 605 46 HOH HOH . 
W 12 HOH B 6 606 54 HOH HOH . 
W 12 HOH B 7 607 28 HOH HOH . 
W 12 HOH B 8 608 53 HOH HOH . 
W 12 HOH B 9 609 51 HOH HOH . 
W 12 HOH B 10 610 15 HOH HOH . 
W 12 HOH B 11 611 2 HOH HOH . 
W 12 HOH B 12 612 97 HOH HOH . 
W 12 HOH B 13 613 95 HOH HOH . 
W 12 HOH B 14 614 17 HOH HOH . 
W 12 HOH B 15 615 16 HOH HOH . 
W 12 HOH B 16 616 26 HOH HOH . 
W 12 HOH B 17 617 56 HOH HOH . 
W 12 HOH B 18 618 27 HOH HOH . 
W 12 HOH B 19 619 75 HOH HOH . 
W 12 HOH B 20 620 55 HOH HOH . 
W 12 HOH B 21 621 12 HOH HOH . 
W 12 HOH B 22 622 57 HOH HOH . 
X 12 HOH C 1 601 39 HOH HOH . 
X 12 HOH C 2 602 90 HOH HOH . 
X 12 HOH C 3 603 76 HOH HOH . 
X 12 HOH C 4 604 37 HOH HOH . 
X 12 HOH C 5 605 102 HOH HOH . 
X 12 HOH C 6 606 30 HOH HOH . 
X 12 HOH C 7 607 38 HOH HOH . 
X 12 HOH C 8 608 80 HOH HOH . 
X 12 HOH C 9 609 31 HOH HOH . 
X 12 HOH C 10 610 35 HOH HOH . 
X 12 HOH C 11 611 101 HOH HOH . 
X 12 HOH C 12 612 8 HOH HOH . 
X 12 HOH C 13 613 78 HOH HOH . 
X 12 HOH C 14 614 85 HOH HOH . 
X 12 HOH C 15 615 41 HOH HOH . 
X 12 HOH C 16 616 6 HOH HOH . 
X 12 HOH C 17 617 43 HOH HOH . 
X 12 HOH C 18 618 19 HOH HOH . 
X 12 HOH C 19 619 36 HOH HOH . 
X 12 HOH C 20 620 86 HOH HOH . 
X 12 HOH C 21 621 13 HOH HOH . 
X 12 HOH C 22 622 4 HOH HOH . 
X 12 HOH C 23 623 107 HOH HOH . 
X 12 HOH C 24 624 32 HOH HOH . 
X 12 HOH C 25 625 40 HOH HOH . 
X 12 HOH C 26 626 33 HOH HOH . 
X 12 HOH C 27 627 21 HOH HOH . 
X 12 HOH C 28 628 79 HOH HOH . 
X 12 HOH C 29 629 104 HOH HOH . 
X 12 HOH C 30 630 89 HOH HOH . 
X 12 HOH C 31 631 77 HOH HOH . 
X 12 HOH C 32 632 87 HOH HOH . 
X 12 HOH C 33 633 18 HOH HOH . 
X 12 HOH C 34 634 93 HOH HOH . 
X 12 HOH C 35 635 29 HOH HOH . 
X 12 HOH C 36 636 94 HOH HOH . 
X 12 HOH C 37 637 103 HOH HOH . 
X 12 HOH C 38 638 84 HOH HOH . 
X 12 HOH C 39 639 1 HOH HOH . 
X 12 HOH C 40 640 14 HOH HOH . 
X 12 HOH C 41 641 106 HOH HOH . 
X 12 HOH C 42 642 110 HOH HOH . 
X 12 HOH C 43 643 34 HOH HOH . 
X 12 HOH C 44 644 42 HOH HOH . 
X 12 HOH C 45 645 81 HOH HOH . 
X 12 HOH C 46 646 20 HOH HOH . 
X 12 HOH C 47 647 7 HOH HOH . 
X 12 HOH C 48 648 44 HOH HOH . 
X 12 HOH C 49 649 91 HOH HOH . 
X 12 HOH C 50 650 109 HOH HOH . 
X 12 HOH C 51 651 82 HOH HOH . 
X 12 HOH C 52 652 108 HOH HOH . 
X 12 HOH C 53 653 88 HOH HOH . 
X 12 HOH C 54 654 92 HOH HOH . 
X 12 HOH C 55 655 11 HOH HOH . 
Y 12 HOH E 1 201 61 HOH HOH . 
Y 12 HOH E 2 202 3 HOH HOH . 
Z 12 HOH F 1 501 70 HOH HOH . 
Z 12 HOH F 2 502 72 HOH HOH . 
Z 12 HOH F 3 503 71 HOH HOH . 
Z 12 HOH F 4 504 69 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               -25.856 
_atom_site.Cartn_y               76.187 
_atom_site.Cartn_z               -45.059 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        22.3 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#