data_5XHE
#
_model_server_result.job_id            J5zX-bt4IveiI3waWtX7vw 
_model_server_result.datetime_utc      '2024-10-19 09:24:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xhe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    5XHE 
#
_exptl.entry_id    5XHE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XHE 
_cell.length_a            32.19 
_cell.length_b            52.45 
_cell.length_c            71.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XHE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 82 A ASN 424 1_555 A N CME 83 A CME 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C CME 83 A CME 425 1_555 A N TYR 84 A TYR 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 150 n n 
C1 C2 GOL sing 151 n n 
C1 H11 GOL sing 152 n n 
C1 H12 GOL sing 153 n n 
O1 HO1 GOL sing 154 n n 
C2 O2 GOL sing 155 n n 
C2 C3 GOL sing 156 n n 
C2 H2 GOL sing 157 n n 
O2 HO2 GOL sing 158 n n 
C3 O3 GOL sing 159 n n 
C3 H31 GOL sing 160 n n 
C3 H32 GOL sing 161 n n 
O3 HO3 GOL sing 162 n n 
#
_atom_sites.entry_id                     5XHE 
_atom_sites.fract_transf_matrix[1][1]    0.031066 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PGE A 1 501 1 PGE PGE . 
C 3 GOL A 1 502 1 GOL GOL . 
D 3 GOL A 1 503 2 GOL GOL . 
E 3 GOL A 1 504 7 GOL GOL . 
F 4 HOH A 1 601 88 HOH HOH . 
F 4 HOH A 2 602 45 HOH HOH . 
F 4 HOH A 3 603 7 HOH HOH . 
F 4 HOH A 4 604 16 HOH HOH . 
F 4 HOH A 5 605 101 HOH HOH . 
F 4 HOH A 6 606 89 HOH HOH . 
F 4 HOH A 7 607 115 HOH HOH . 
F 4 HOH A 8 608 152 HOH HOH . 
F 4 HOH A 9 609 19 HOH HOH . 
F 4 HOH A 10 610 17 HOH HOH . 
F 4 HOH A 11 611 13 HOH HOH . 
F 4 HOH A 12 612 76 HOH HOH . 
F 4 HOH A 13 613 3 HOH HOH . 
F 4 HOH A 14 614 110 HOH HOH . 
F 4 HOH A 15 615 62 HOH HOH . 
F 4 HOH A 16 616 143 HOH HOH . 
F 4 HOH A 17 617 10 HOH HOH . 
F 4 HOH A 18 618 49 HOH HOH . 
F 4 HOH A 19 619 5 HOH HOH . 
F 4 HOH A 20 620 95 HOH HOH . 
F 4 HOH A 21 621 15 HOH HOH . 
F 4 HOH A 22 622 20 HOH HOH . 
F 4 HOH A 23 623 145 HOH HOH . 
F 4 HOH A 24 624 140 HOH HOH . 
F 4 HOH A 25 625 26 HOH HOH . 
F 4 HOH A 26 626 54 HOH HOH . 
F 4 HOH A 27 627 23 HOH HOH . 
F 4 HOH A 28 628 126 HOH HOH . 
F 4 HOH A 29 629 59 HOH HOH . 
F 4 HOH A 30 630 25 HOH HOH . 
F 4 HOH A 31 631 28 HOH HOH . 
F 4 HOH A 32 632 87 HOH HOH . 
F 4 HOH A 33 633 66 HOH HOH . 
F 4 HOH A 34 634 1 HOH HOH . 
F 4 HOH A 35 635 121 HOH HOH . 
F 4 HOH A 36 636 107 HOH HOH . 
F 4 HOH A 37 637 94 HOH HOH . 
F 4 HOH A 38 638 43 HOH HOH . 
F 4 HOH A 39 639 72 HOH HOH . 
F 4 HOH A 40 640 51 HOH HOH . 
F 4 HOH A 41 641 4 HOH HOH . 
F 4 HOH A 42 642 84 HOH HOH . 
F 4 HOH A 43 643 9 HOH HOH . 
F 4 HOH A 44 644 64 HOH HOH . 
F 4 HOH A 45 645 14 HOH HOH . 
F 4 HOH A 46 646 32 HOH HOH . 
F 4 HOH A 47 647 39 HOH HOH . 
F 4 HOH A 48 648 6 HOH HOH . 
F 4 HOH A 49 649 12 HOH HOH . 
F 4 HOH A 50 650 70 HOH HOH . 
F 4 HOH A 51 651 27 HOH HOH . 
F 4 HOH A 52 652 53 HOH HOH . 
F 4 HOH A 53 653 52 HOH HOH . 
F 4 HOH A 54 654 104 HOH HOH . 
F 4 HOH A 55 655 67 HOH HOH . 
F 4 HOH A 56 656 11 HOH HOH . 
F 4 HOH A 57 657 118 HOH HOH . 
F 4 HOH A 58 658 8 HOH HOH . 
F 4 HOH A 59 659 40 HOH HOH . 
F 4 HOH A 60 660 57 HOH HOH . 
F 4 HOH A 61 661 38 HOH HOH . 
F 4 HOH A 62 662 68 HOH HOH . 
F 4 HOH A 63 663 46 HOH HOH . 
F 4 HOH A 64 664 125 HOH HOH . 
F 4 HOH A 65 665 50 HOH HOH . 
F 4 HOH A 66 666 91 HOH HOH . 
F 4 HOH A 67 667 109 HOH HOH . 
F 4 HOH A 68 668 63 HOH HOH . 
F 4 HOH A 69 669 119 HOH HOH . 
F 4 HOH A 70 670 18 HOH HOH . 
F 4 HOH A 71 671 135 HOH HOH . 
F 4 HOH A 72 672 47 HOH HOH . 
F 4 HOH A 73 673 2 HOH HOH . 
F 4 HOH A 74 674 69 HOH HOH . 
F 4 HOH A 75 675 132 HOH HOH . 
F 4 HOH A 76 676 65 HOH HOH . 
F 4 HOH A 77 677 103 HOH HOH . 
F 4 HOH A 78 678 112 HOH HOH . 
F 4 HOH A 79 679 79 HOH HOH . 
F 4 HOH A 80 680 44 HOH HOH . 
F 4 HOH A 81 681 117 HOH HOH . 
F 4 HOH A 82 682 75 HOH HOH . 
F 4 HOH A 83 683 138 HOH HOH . 
F 4 HOH A 84 684 90 HOH HOH . 
F 4 HOH A 85 685 71 HOH HOH . 
F 4 HOH A 86 686 55 HOH HOH . 
F 4 HOH A 87 687 73 HOH HOH . 
F 4 HOH A 88 688 108 HOH HOH . 
F 4 HOH A 89 689 122 HOH HOH . 
F 4 HOH A 90 690 146 HOH HOH . 
F 4 HOH A 91 691 124 HOH HOH . 
F 4 HOH A 92 692 58 HOH HOH . 
F 4 HOH A 93 693 92 HOH HOH . 
F 4 HOH A 94 694 136 HOH HOH . 
F 4 HOH A 95 695 56 HOH HOH . 
F 4 HOH A 96 696 98 HOH HOH . 
F 4 HOH A 97 697 116 HOH HOH . 
F 4 HOH A 98 698 60 HOH HOH . 
F 4 HOH A 99 699 48 HOH HOH . 
F 4 HOH A 100 700 113 HOH HOH . 
F 4 HOH A 101 701 97 HOH HOH . 
F 4 HOH A 102 702 85 HOH HOH . 
F 4 HOH A 103 703 111 HOH HOH . 
F 4 HOH A 104 704 102 HOH HOH . 
F 4 HOH A 105 705 150 HOH HOH . 
F 4 HOH A 106 706 144 HOH HOH . 
F 4 HOH A 107 707 151 HOH HOH . 
F 4 HOH A 108 708 147 HOH HOH . 
F 4 HOH A 109 709 93 HOH HOH . 
F 4 HOH A 110 710 133 HOH HOH . 
F 4 HOH A 111 711 83 HOH HOH . 
F 4 HOH A 112 712 127 HOH HOH . 
F 4 HOH A 113 713 129 HOH HOH . 
F 4 HOH A 114 714 30 HOH HOH . 
F 4 HOH A 115 715 123 HOH HOH . 
F 4 HOH A 116 716 100 HOH HOH . 
F 4 HOH A 117 717 80 HOH HOH . 
F 4 HOH A 118 718 134 HOH HOH . 
F 4 HOH A 119 719 21 HOH HOH . 
F 4 HOH A 120 720 137 HOH HOH . 
F 4 HOH A 121 721 29 HOH HOH . 
F 4 HOH A 122 722 128 HOH HOH . 
F 4 HOH A 123 723 142 HOH HOH . 
F 4 HOH A 124 724 131 HOH HOH . 
F 4 HOH A 125 725 130 HOH HOH . 
F 4 HOH A 126 726 42 HOH HOH . 
F 4 HOH A 127 727 141 HOH HOH . 
F 4 HOH A 128 728 139 HOH HOH . 
F 4 HOH A 129 729 114 HOH HOH . 
F 4 HOH A 130 730 24 HOH HOH . 
F 4 HOH A 131 731 99 HOH HOH . 
F 4 HOH A 132 732 105 HOH HOH . 
F 4 HOH A 133 733 96 HOH HOH . 
F 4 HOH A 134 734 120 HOH HOH . 
F 4 HOH A 135 735 86 HOH HOH . 
F 4 HOH A 136 736 41 HOH HOH . 
F 4 HOH A 137 737 82 HOH HOH . 
F 4 HOH A 138 738 78 HOH HOH . 
F 4 HOH A 139 739 22 HOH HOH . 
F 4 HOH A 140 740 81 HOH HOH . 
F 4 HOH A 141 741 77 HOH HOH . 
F 4 HOH A 142 742 74 HOH HOH . 
F 4 HOH A 143 743 148 HOH HOH . 
F 4 HOH A 144 744 61 HOH HOH . 
F 4 HOH A 145 745 31 HOH HOH . 
F 4 HOH A 146 746 106 HOH HOH . 
F 4 HOH A 147 747 149 HOH HOH . 
F 4 HOH A 148 748 33 HOH HOH . 
F 4 HOH A 149 749 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 6.345 16.281 64.726 1 30.87 ? C1 GOL 504 A 1 
HETATM 2 O O1 GOL . . . E 3 5.775 14.967 64.789 1 26.53 ? O1 GOL 504 A 1 
HETATM 3 C C2 GOL . . . E 3 7.851 16.167 64.519 1 33.2 ? C2 GOL 504 A 1 
HETATM 4 O O2 GOL . . . E 3 8.203 16.555 63.191 1 34.19 ? O2 GOL 504 A 1 
HETATM 5 C C3 GOL . . . E 3 8.576 17.106 65.459 1 44.98 ? C3 GOL 504 A 1 
HETATM 6 O O3 GOL . . . E 3 9.832 17.49 64.88 1 52.79 ? O3 GOL 504 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#