data_5XHK
#
_model_server_result.job_id            QnW3ORaJkSlyuoVs-VYF3A 
_model_server_result.datetime_utc      '2024-11-05 04:03:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xhk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    5XHK 
#
_exptl.entry_id    5XHK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.217 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            phenanthridin-6(5H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XHK 
_cell.length_a            32.04 
_cell.length_b            52.51 
_cell.length_c            71.37 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XHK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H9 N O' 
_chem_comp.formula_weight    195.217 
_chem_comp.id                LDR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              phenanthridin-6(5H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAK OAA LDR doub 197 n n 
CAD CAB LDR doub 198 n y 
CAB CAF LDR sing 199 n y 
CAB HAB LDR sing 200 n n 
CAE CAC LDR doub 201 n y 
CAC CAG LDR sing 202 n y 
CAC HAC LDR sing 203 n n 
CAD CAH LDR sing 204 n y 
CAD HAD LDR sing 205 n n 
CAI CAE LDR sing 206 n y 
CAE HAE LDR sing 207 n n 
CAF CAL LDR doub 208 n y 
CAF HAF LDR sing 209 n n 
CAM CAG LDR doub 210 n y 
CAG HAG LDR sing 211 n n 
CAH CAN LDR doub 212 n y 
CAH HAH LDR sing 213 n n 
CAI CAO LDR doub 214 n y 
CAI HAI LDR sing 215 n n 
CAL NAJ LDR sing 216 n n 
NAJ CAK LDR sing 217 n n 
NAJ HNAJ LDR sing 218 n n 
CAM CAK LDR sing 219 n n 
CAN CAL LDR sing 220 n y 
CAO CAM LDR sing 221 n y 
CAN CAO LDR sing 222 n n 
#
_atom_sites.entry_id                     5XHK 
_atom_sites.fract_transf_matrix[1][1]    0.031211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 1 GOL GOL . 
C 2 GOL A 1 502 2 GOL GOL . 
D 3 2ME A 1 503 1 2ME PG . 
E 4 LDR A 1 504 1 LDR L10 . 
F 5 HOH A 1 601 111 HOH HOH . 
F 5 HOH A 2 602 115 HOH HOH . 
F 5 HOH A 3 603 107 HOH HOH . 
F 5 HOH A 4 604 1 HOH HOH . 
F 5 HOH A 5 605 6 HOH HOH . 
F 5 HOH A 6 606 7 HOH HOH . 
F 5 HOH A 7 607 20 HOH HOH . 
F 5 HOH A 8 608 124 HOH HOH . 
F 5 HOH A 9 609 131 HOH HOH . 
F 5 HOH A 10 610 41 HOH HOH . 
F 5 HOH A 11 611 23 HOH HOH . 
F 5 HOH A 12 612 66 HOH HOH . 
F 5 HOH A 13 613 86 HOH HOH . 
F 5 HOH A 14 614 57 HOH HOH . 
F 5 HOH A 15 615 54 HOH HOH . 
F 5 HOH A 16 616 158 HOH HOH . 
F 5 HOH A 17 617 28 HOH HOH . 
F 5 HOH A 18 618 67 HOH HOH . 
F 5 HOH A 19 619 2 HOH HOH . 
F 5 HOH A 20 620 149 HOH HOH . 
F 5 HOH A 21 621 61 HOH HOH . 
F 5 HOH A 22 622 14 HOH HOH . 
F 5 HOH A 23 623 11 HOH HOH . 
F 5 HOH A 24 624 91 HOH HOH . 
F 5 HOH A 25 625 5 HOH HOH . 
F 5 HOH A 26 626 55 HOH HOH . 
F 5 HOH A 27 627 27 HOH HOH . 
F 5 HOH A 28 628 69 HOH HOH . 
F 5 HOH A 29 629 102 HOH HOH . 
F 5 HOH A 30 630 157 HOH HOH . 
F 5 HOH A 31 631 43 HOH HOH . 
F 5 HOH A 32 632 4 HOH HOH . 
F 5 HOH A 33 633 126 HOH HOH . 
F 5 HOH A 34 634 63 HOH HOH . 
F 5 HOH A 35 635 10 HOH HOH . 
F 5 HOH A 36 636 8 HOH HOH . 
F 5 HOH A 37 637 22 HOH HOH . 
F 5 HOH A 38 638 45 HOH HOH . 
F 5 HOH A 39 639 89 HOH HOH . 
F 5 HOH A 40 640 70 HOH HOH . 
F 5 HOH A 41 641 40 HOH HOH . 
F 5 HOH A 42 642 88 HOH HOH . 
F 5 HOH A 43 643 52 HOH HOH . 
F 5 HOH A 44 644 148 HOH HOH . 
F 5 HOH A 45 645 42 HOH HOH . 
F 5 HOH A 46 646 143 HOH HOH . 
F 5 HOH A 47 647 84 HOH HOH . 
F 5 HOH A 48 648 56 HOH HOH . 
F 5 HOH A 49 649 79 HOH HOH . 
F 5 HOH A 50 650 13 HOH HOH . 
F 5 HOH A 51 651 151 HOH HOH . 
F 5 HOH A 52 652 36 HOH HOH . 
F 5 HOH A 53 653 98 HOH HOH . 
F 5 HOH A 54 654 150 HOH HOH . 
F 5 HOH A 55 655 17 HOH HOH . 
F 5 HOH A 56 656 71 HOH HOH . 
F 5 HOH A 57 657 138 HOH HOH . 
F 5 HOH A 58 658 15 HOH HOH . 
F 5 HOH A 59 659 169 HOH HOH . 
F 5 HOH A 60 660 46 HOH HOH . 
F 5 HOH A 61 661 147 HOH HOH . 
F 5 HOH A 62 662 12 HOH HOH . 
F 5 HOH A 63 663 9 HOH HOH . 
F 5 HOH A 64 664 177 HOH HOH . 
F 5 HOH A 65 665 146 HOH HOH . 
F 5 HOH A 66 666 49 HOH HOH . 
F 5 HOH A 67 667 18 HOH HOH . 
F 5 HOH A 68 668 116 HOH HOH . 
F 5 HOH A 69 669 68 HOH HOH . 
F 5 HOH A 70 670 75 HOH HOH . 
F 5 HOH A 71 671 156 HOH HOH . 
F 5 HOH A 72 672 26 HOH HOH . 
F 5 HOH A 73 673 83 HOH HOH . 
F 5 HOH A 74 674 16 HOH HOH . 
F 5 HOH A 75 675 21 HOH HOH . 
F 5 HOH A 76 676 180 HOH HOH . 
F 5 HOH A 77 677 136 HOH HOH . 
F 5 HOH A 78 678 153 HOH HOH . 
F 5 HOH A 79 679 164 HOH HOH . 
F 5 HOH A 80 680 47 HOH HOH . 
F 5 HOH A 81 681 35 HOH HOH . 
F 5 HOH A 82 682 165 HOH HOH . 
F 5 HOH A 83 683 38 HOH HOH . 
F 5 HOH A 84 684 50 HOH HOH . 
F 5 HOH A 85 685 25 HOH HOH . 
F 5 HOH A 86 686 34 HOH HOH . 
F 5 HOH A 87 687 72 HOH HOH . 
F 5 HOH A 88 688 30 HOH HOH . 
F 5 HOH A 89 689 3 HOH HOH . 
F 5 HOH A 90 690 65 HOH HOH . 
F 5 HOH A 91 691 109 HOH HOH . 
F 5 HOH A 92 692 33 HOH HOH . 
F 5 HOH A 93 693 90 HOH HOH . 
F 5 HOH A 94 694 172 HOH HOH . 
F 5 HOH A 95 695 74 HOH HOH . 
F 5 HOH A 96 696 29 HOH HOH . 
F 5 HOH A 97 697 80 HOH HOH . 
F 5 HOH A 98 698 182 HOH HOH . 
F 5 HOH A 99 699 130 HOH HOH . 
F 5 HOH A 100 700 171 HOH HOH . 
F 5 HOH A 101 701 161 HOH HOH . 
F 5 HOH A 102 702 105 HOH HOH . 
F 5 HOH A 103 703 73 HOH HOH . 
F 5 HOH A 104 704 167 HOH HOH . 
F 5 HOH A 105 705 152 HOH HOH . 
F 5 HOH A 106 706 199 HOH HOH . 
F 5 HOH A 107 707 160 HOH HOH . 
F 5 HOH A 108 708 120 HOH HOH . 
F 5 HOH A 109 709 19 HOH HOH . 
F 5 HOH A 110 710 51 HOH HOH . 
F 5 HOH A 111 711 135 HOH HOH . 
F 5 HOH A 112 712 48 HOH HOH . 
F 5 HOH A 113 713 82 HOH HOH . 
F 5 HOH A 114 714 129 HOH HOH . 
F 5 HOH A 115 715 176 HOH HOH . 
F 5 HOH A 116 716 100 HOH HOH . 
F 5 HOH A 117 717 77 HOH HOH . 
F 5 HOH A 118 718 44 HOH HOH . 
F 5 HOH A 119 719 53 HOH HOH . 
F 5 HOH A 120 720 140 HOH HOH . 
F 5 HOH A 121 721 154 HOH HOH . 
F 5 HOH A 122 722 94 HOH HOH . 
F 5 HOH A 123 723 31 HOH HOH . 
F 5 HOH A 124 724 170 HOH HOH . 
F 5 HOH A 125 725 85 HOH HOH . 
F 5 HOH A 126 726 174 HOH HOH . 
F 5 HOH A 127 727 103 HOH HOH . 
F 5 HOH A 128 728 144 HOH HOH . 
F 5 HOH A 129 729 145 HOH HOH . 
F 5 HOH A 130 730 155 HOH HOH . 
F 5 HOH A 131 731 168 HOH HOH . 
F 5 HOH A 132 732 187 HOH HOH . 
F 5 HOH A 133 733 78 HOH HOH . 
F 5 HOH A 134 734 166 HOH HOH . 
F 5 HOH A 135 735 62 HOH HOH . 
F 5 HOH A 136 736 81 HOH HOH . 
F 5 HOH A 137 737 196 HOH HOH . 
F 5 HOH A 138 738 137 HOH HOH . 
F 5 HOH A 139 739 92 HOH HOH . 
F 5 HOH A 140 740 132 HOH HOH . 
F 5 HOH A 141 741 87 HOH HOH . 
F 5 HOH A 142 742 142 HOH HOH . 
F 5 HOH A 143 743 76 HOH HOH . 
F 5 HOH A 144 744 194 HOH HOH . 
F 5 HOH A 145 745 24 HOH HOH . 
F 5 HOH A 146 746 181 HOH HOH . 
F 5 HOH A 147 747 141 HOH HOH . 
F 5 HOH A 148 748 127 HOH HOH . 
F 5 HOH A 149 749 64 HOH HOH . 
F 5 HOH A 150 750 39 HOH HOH . 
F 5 HOH A 151 751 183 HOH HOH . 
F 5 HOH A 152 752 189 HOH HOH . 
F 5 HOH A 153 753 198 HOH HOH . 
F 5 HOH A 154 754 139 HOH HOH . 
F 5 HOH A 155 755 175 HOH HOH . 
F 5 HOH A 156 756 195 HOH HOH . 
F 5 HOH A 157 757 188 HOH HOH . 
F 5 HOH A 158 758 58 HOH HOH . 
F 5 HOH A 159 759 113 HOH HOH . 
F 5 HOH A 160 760 190 HOH HOH . 
F 5 HOH A 161 761 192 HOH HOH . 
F 5 HOH A 162 762 185 HOH HOH . 
F 5 HOH A 163 763 173 HOH HOH . 
F 5 HOH A 164 764 178 HOH HOH . 
F 5 HOH A 165 765 133 HOH HOH . 
F 5 HOH A 166 766 162 HOH HOH . 
F 5 HOH A 167 767 163 HOH HOH . 
F 5 HOH A 168 768 32 HOH HOH . 
F 5 HOH A 169 769 117 HOH HOH . 
F 5 HOH A 170 770 112 HOH HOH . 
F 5 HOH A 171 771 106 HOH HOH . 
F 5 HOH A 172 772 128 HOH HOH . 
F 5 HOH A 173 773 134 HOH HOH . 
F 5 HOH A 174 774 118 HOH HOH . 
F 5 HOH A 175 775 122 HOH HOH . 
F 5 HOH A 176 776 119 HOH HOH . 
F 5 HOH A 177 777 60 HOH HOH . 
F 5 HOH A 178 778 95 HOH HOH . 
F 5 HOH A 179 779 191 HOH HOH . 
F 5 HOH A 180 780 108 HOH HOH . 
F 5 HOH A 181 781 110 HOH HOH . 
F 5 HOH A 182 782 123 HOH HOH . 
F 5 HOH A 183 783 37 HOH HOH . 
F 5 HOH A 184 784 101 HOH HOH . 
F 5 HOH A 185 785 93 HOH HOH . 
F 5 HOH A 186 786 99 HOH HOH . 
F 5 HOH A 187 787 125 HOH HOH . 
F 5 HOH A 188 788 186 HOH HOH . 
F 5 HOH A 189 789 96 HOH HOH . 
F 5 HOH A 190 790 184 HOH HOH . 
F 5 HOH A 191 791 121 HOH HOH . 
F 5 HOH A 192 792 193 HOH HOH . 
F 5 HOH A 193 793 114 HOH HOH . 
F 5 HOH A 194 794 179 HOH HOH . 
F 5 HOH A 195 795 59 HOH HOH . 
F 5 HOH A 196 796 197 HOH HOH . 
F 5 HOH A 197 797 104 HOH HOH . 
F 5 HOH A 198 798 97 HOH HOH . 
F 5 HOH A 199 799 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA LDR . A . E 4 5.962 14.059 -6.15 0.5 7.51 ? OAA LDR 504 A 1 
HETATM 2 O OAA LDR . B . E 4 7.865 19.248 -3.272 0.5 18.47 ? OAA LDR 504 A 1 
HETATM 3 C CAB LDR . A . E 4 9.622 17.969 -8.333 0.5 18.13 ? CAB LDR 504 A 1 
HETATM 4 C CAB LDR . B . E 4 9.406 17.971 -8.817 0.5 17.99 ? CAB LDR 504 A 1 
HETATM 5 C CAC LDR . A . E 4 5.536 16.699 -2.921 0.5 12.37 ? CAC LDR 504 A 1 
HETATM 6 C CAC LDR . B . E 4 5.802 15.67 -3.336 0.5 12.39 ? CAC LDR 504 A 1 
HETATM 7 C CAD LDR . A . E 4 9.539 18.906 -7.309 0.5 18.01 ? CAD LDR 504 A 1 
HETATM 8 C CAD LDR . B . E 4 8.731 16.758 -8.892 0.5 15.58 ? CAD LDR 504 A 1 
HETATM 9 C CAE LDR . A . E 4 6.256 17.899 -2.955 0.5 13.85 ? CAE LDR 504 A 1 
HETATM 10 C CAE LDR . B . E 4 5.837 14.931 -4.497 0.5 9.25 ? CAE LDR 504 A 1 
HETATM 11 C CAF LDR . A . E 4 8.887 16.791 -8.264 0.5 15.3 ? CAF LDR 504 A 1 
HETATM 12 C CAF LDR . B . E 4 9.363 18.719 -7.645 0.5 17.74 ? CAF LDR 504 A 1 
HETATM 13 C CAG LDR . A . E 4 5.611 15.749 -3.941 0.5 10.47 ? CAG LDR 504 A 1 
HETATM 14 C CAG LDR . B . E 4 6.482 16.882 -3.285 0.5 14.8 ? CAG LDR 504 A 1 
HETATM 15 C CAH LDR . A . E 4 8.717 18.669 -6.211 0.5 16.31 ? CAH LDR 504 A 1 
HETATM 16 C CAH LDR . B . E 4 8.01 16.3 -7.801 0.5 15.27 ? CAH LDR 504 A 1 
HETATM 17 C CAI LDR . A . E 4 7.08 18.15 -4.036 0.5 13.37 ? CAI LDR 504 A 1 
HETATM 18 C CAI LDR . B . E 4 6.57 15.407 -5.565 0.5 4.56 ? CAI LDR 504 A 1 
HETATM 19 N NAJ LDR . A . E 4 7.369 15.426 -7.109 0.5 13.63 ? NAJ LDR 504 A 1 
HETATM 20 N NAJ LDR . B . E 4 8.59 18.986 -5.401 0.5 17.89 ? NAJ LDR 504 A 1 
HETATM 21 C CAK LDR . A . E 4 6.572 15.138 -6.062 0.5 7.93 ? CAK LDR 504 A 1 
HETATM 22 C CAK LDR . B . E 4 7.891 18.561 -4.318 0.5 16.72 ? CAK LDR 504 A 1 
HETATM 23 C CAL LDR . A . E 4 8.077 16.56 -7.166 0.5 14.46 ? CAL LDR 504 A 1 
HETATM 24 C CAL LDR . B . E 4 8.64 18.259 -6.547 0.5 16.44 ? CAL LDR 504 A 1 
HETATM 25 C CAM LDR . A . E 4 6.443 16.005 -5.015 0.5 11.08 ? CAM LDR 504 A 1 
HETATM 26 C CAM LDR . B . E 4 7.209 17.352 -4.37 0.5 15.65 ? CAM LDR 504 A 1 
HETATM 27 C CAN LDR . A . E 4 7.985 17.488 -6.142 0.5 15.54 ? CAN LDR 504 A 1 
HETATM 28 C CAN LDR . B . E 4 7.966 17.05 -6.632 0.5 14.95 ? CAN LDR 504 A 1 
HETATM 29 C CAO LDR . A . E 4 7.157 17.214 -5.063 0.5 12.54 ? CAO LDR 504 A 1 
HETATM 30 C CAO LDR . B . E 4 7.26 16.605 -5.527 0.5 12.15 ? CAO LDR 504 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#