data_5XHL
#
_model_server_result.job_id            t21lEkgF7d7TK49xyupBYw 
_model_server_result.datetime_utc      '2025-09-14 13:57:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xhl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    5XHL 
#
_exptl.entry_id    5XHL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              582.246 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Phthalocyanine containing GA' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5XHL 
_cell.length_a            153.625 
_cell.length_b            153.625 
_cell.length_c            36.761 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XHL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 32 A HIS 32 1_555 C GA VPC . A VPC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc2 A OH TYR 75 A TYR 75 1_555 C GA VPC . A VPC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc3 B NE2 HIS 32 B HIS 32 1_555 D GA VPC . B VPC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 sing 
metalc ? metalc4 B OH TYR 75 B TYR 75 1_555 D GA VPC . B VPC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
#
_chem_comp.formula           'C32 H16 Ga N8' 
_chem_comp.formula_weight    582.246 
_chem_comp.id                VPC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Phthalocyanine containing GA' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Gallium(III)-phthalocyanine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 C23 VPC doub 363 n y 
C24 C6 VPC sing 364 n y 
C23 C22 VPC sing 365 n y 
C22 C21 VPC doub 366 n y 
C21 C5 VPC sing 367 n y 
C5 C6 VPC doub 368 n y 
C5 C8 VPC sing 369 n n 
C6 C7 VPC sing 370 n n 
C7 N3 VPC doub 371 n n 
C7 N2 VPC sing 372 n n 
N3 C4 VPC sing 373 n n 
C4 N1 VPC doub 374 n n 
C4 C1 VPC sing 375 n n 
N1 C3 VPC sing 376 n n 
N1 GA VPC sing 377 n n 
C1 C25 VPC sing 378 n y 
C1 C2 VPC doub 379 n y 
C25 C26 VPC doub 380 n y 
C26 C27 VPC sing 381 n y 
C27 C28 VPC doub 382 n y 
C28 C2 VPC sing 383 n y 
C2 C3 VPC sing 384 n n 
C3 N7 VPC doub 385 n n 
N7 C16 VPC sing 386 n n 
C16 N6 VPC sing 387 n y 
C16 C13 VPC doub 388 n y 
N6 C15 VPC sing 389 n y 
N6 GA VPC sing 390 n n 
C13 C29 VPC sing 391 n y 
C13 C14 VPC sing 392 n y 
C29 C30 VPC doub 393 n y 
C30 C31 VPC sing 394 n y 
C31 C32 VPC doub 395 n y 
C32 C14 VPC sing 396 n y 
C14 C15 VPC doub 397 n y 
C15 N8 VPC sing 398 n n 
N8 C12 VPC doub 399 n n 
C12 N4 VPC sing 400 n n 
C12 C9 VPC sing 401 n n 
N4 C11 VPC doub 402 n n 
N4 GA VPC sing 403 n n 
C9 C17 VPC sing 404 n y 
C9 C10 VPC doub 405 n y 
C17 C18 VPC doub 406 n y 
C18 C19 VPC sing 407 n y 
C19 C20 VPC doub 408 n y 
C20 C10 VPC sing 409 n y 
C10 C11 VPC sing 410 n n 
C11 N5 VPC sing 411 n n 
N5 C8 VPC doub 412 n n 
C8 N2 VPC sing 413 n n 
N2 GA VPC sing 414 n n 
C24 H1 VPC sing 415 n n 
C23 H2 VPC sing 416 n n 
C22 H3 VPC sing 417 n n 
C21 H4 VPC sing 418 n n 
C25 H5 VPC sing 419 n n 
C26 H6 VPC sing 420 n n 
C27 H7 VPC sing 421 n n 
C28 H8 VPC sing 422 n n 
C29 H9 VPC sing 423 n n 
C30 H10 VPC sing 424 n n 
C31 H11 VPC sing 425 n n 
C32 H12 VPC sing 426 n n 
C17 H13 VPC sing 427 n n 
C18 H14 VPC sing 428 n n 
C19 H15 VPC sing 429 n n 
C20 H16 VPC sing 430 n n 
#
_atom_sites.entry_id                     5XHL 
_atom_sites.fract_transf_matrix[1][1]    0.006509 
_atom_sites.fract_transf_matrix[1][2]    0.003758 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007516 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027203 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VPC A 1 201 201 VPC VPC . 
D 2 VPC B 1 201 201 VPC VPC . 
E 3 HOH A 1 301 4 HOH HOH . 
E 3 HOH A 2 302 18 HOH HOH . 
E 3 HOH A 3 303 38 HOH HOH . 
E 3 HOH A 4 304 15 HOH HOH . 
E 3 HOH A 5 305 24 HOH HOH . 
E 3 HOH A 6 306 28 HOH HOH . 
E 3 HOH A 7 307 11 HOH HOH . 
E 3 HOH A 8 308 5 HOH HOH . 
E 3 HOH A 9 309 23 HOH HOH . 
E 3 HOH A 10 310 31 HOH HOH . 
E 3 HOH A 11 311 35 HOH HOH . 
E 3 HOH A 12 312 25 HOH HOH . 
E 3 HOH A 13 313 19 HOH HOH . 
E 3 HOH A 14 314 27 HOH HOH . 
E 3 HOH A 15 315 17 HOH HOH . 
E 3 HOH A 16 316 21 HOH HOH . 
E 3 HOH A 17 317 32 HOH HOH . 
E 3 HOH A 18 318 2 HOH HOH . 
E 3 HOH A 19 319 29 HOH HOH . 
E 3 HOH A 20 320 37 HOH HOH . 
E 3 HOH A 21 321 9 HOH HOH . 
E 3 HOH A 22 322 6 HOH HOH . 
E 3 HOH A 23 323 36 HOH HOH . 
F 3 HOH B 1 301 3 HOH HOH . 
F 3 HOH B 2 302 1 HOH HOH . 
F 3 HOH B 3 303 8 HOH HOH . 
F 3 HOH B 4 304 26 HOH HOH . 
F 3 HOH B 5 305 20 HOH HOH . 
F 3 HOH B 6 306 16 HOH HOH . 
F 3 HOH B 7 307 13 HOH HOH . 
F 3 HOH B 8 308 12 HOH HOH . 
F 3 HOH B 9 309 33 HOH HOH . 
F 3 HOH B 10 310 30 HOH HOH . 
F 3 HOH B 11 311 14 HOH HOH . 
F 3 HOH B 12 312 10 HOH HOH . 
F 3 HOH B 13 313 7 HOH HOH . 
F 3 HOH B 14 314 22 HOH HOH . 
F 3 HOH B 15 315 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 VPC . . . D 2 41.119 -35.339 6.534 1 44.57 ? C24 VPC 201 B 1 
HETATM 2 C C23 VPC . . . D 2 41.29 -34.122 5.864 1 43.61 ? C23 VPC 201 B 1 
HETATM 3 C C22 VPC . . . D 2 40.538 -33.848 4.721 1 43.49 ? C22 VPC 201 B 1 
HETATM 4 C C21 VPC . . . D 2 39.64 -34.815 4.28 1 44.45 ? C21 VPC 201 B 1 
HETATM 5 C C5 VPC . . . D 2 39.506 -35.974 4.952 1 44.23 ? C5 VPC 201 B 1 
HETATM 6 C C6 VPC . . . D 2 40.238 -36.241 6.072 1 45.23 ? C6 VPC 201 B 1 
HETATM 7 C C7 VPC . . . D 2 39.912 -37.447 6.546 1 43.63 ? C7 VPC 201 B 1 
HETATM 8 N N3 VPC . . . D 2 40.367 -38.245 7.696 1 44.63 ? N3 VPC 201 B 1 
HETATM 9 C C4 VPC . . . D 2 39.939 -39.509 8.334 1 42.61 ? C4 VPC 201 B 1 
HETATM 10 N N1 VPC . . . D 2 39.089 -40.367 7.783 1 41.69 ? N1 VPC 201 B 1 
HETATM 11 C C1 VPC . . . D 2 40.267 -40.108 9.492 1 42.28 ? C1 VPC 201 B 1 
HETATM 12 C C25 VPC . . . D 2 41.086 -39.723 10.485 1 42.29 ? C25 VPC 201 B 1 
HETATM 13 C C26 VPC . . . D 2 41.258 -40.528 11.625 1 41.08 ? C26 VPC 201 B 1 
HETATM 14 C C27 VPC . . . D 2 40.569 -41.738 11.722 1 39.14 ? C27 VPC 201 B 1 
HETATM 15 C C28 VPC . . . D 2 39.735 -42.093 10.67 1 39.27 ? C28 VPC 201 B 1 
HETATM 16 C C2 VPC . . . D 2 39.597 -41.293 9.6 1 41.49 ? C2 VPC 201 B 1 
HETATM 17 C C3 VPC . . . D 2 38.844 -41.462 8.517 1 42.45 ? C3 VPC 201 B 1 
HETATM 18 N N7 VPC . . . D 2 37.941 -42.566 8.155 1 41.53 ? N7 VPC 201 B 1 
HETATM 19 C C16 VPC . . . D 2 37.1 -42.834 6.986 1 39.87 ? C16 VPC 201 B 1 
HETATM 20 N N6 VPC . . . D 2 36.979 -42.011 5.958 1 39.08 ? N6 VPC 201 B 1 
HETATM 21 C C13 VPC . . . D 2 36.317 -43.863 6.659 1 40.26 ? C13 VPC 201 B 1 
HETATM 22 C C29 VPC . . . D 2 36.049 -44.992 7.323 1 39.32 ? C29 VPC 201 B 1 
HETATM 23 C C30 VPC . . . D 2 35.182 -45.934 6.767 1 40.39 ? C30 VPC 201 B 1 
HETATM 24 C C31 VPC . . . D 2 34.6 -45.701 5.522 1 39.04 ? C31 VPC 201 B 1 
HETATM 25 C C32 VPC . . . D 2 34.916 -44.51 4.873 1 39.22 ? C32 VPC 201 B 1 
HETATM 26 C C14 VPC . . . D 2 35.751 -43.624 5.446 1 41.07 ? C14 VPC 201 B 1 
HETATM 27 C C15 VPC . . . D 2 36.177 -42.439 5.005 1 39.82 ? C15 VPC 201 B 1 
HETATM 28 N N8 VPC . . . D 2 35.88 -41.728 3.793 1 39.94 ? N8 VPC 201 B 1 
HETATM 29 C C12 VPC . . . D 2 36.11 -40.392 3.295 1 42.62 ? C12 VPC 201 B 1 
HETATM 30 N N4 VPC . . . D 2 36.905 -39.497 3.874 1 41.73 ? N4 VPC 201 B 1 
HETATM 31 C C9 VPC . . . D 2 35.645 -39.79 2.187 1 42.5 ? C9 VPC 201 B 1 
HETATM 32 C C17 VPC . . . D 2 34.807 -40.232 1.228 1 43.5 ? C17 VPC 201 B 1 
HETATM 33 C C18 VPC . . . D 2 34.429 -39.422 0.151 1 44.11 ? C18 VPC 201 B 1 
HETATM 34 C C19 VPC . . . D 2 34.966 -38.14 0.093 1 44.65 ? C19 VPC 201 B 1 
HETATM 35 C C20 VPC . . . D 2 35.841 -37.731 1.111 1 44.4 ? C20 VPC 201 B 1 
HETATM 36 C C10 VPC . . . D 2 36.17 -38.546 2.129 1 43.93 ? C10 VPC 201 B 1 
HETATM 37 C C11 VPC . . . D 2 36.971 -38.358 3.199 1 43.6 ? C11 VPC 201 B 1 
HETATM 38 N N5 VPC . . . D 2 37.752 -37.221 3.633 1 43.89 ? N5 VPC 201 B 1 
HETATM 39 C C8 VPC . . . D 2 38.716 -37.009 4.704 1 43.78 ? C8 VPC 201 B 1 
HETATM 40 N N2 VPC . . . D 2 39.007 -37.857 5.69 1 44.99 ? N2 VPC 201 B 1 
HETATM 41 GA GA VPC . . . D 2 37.952 -39.971 5.845 1 39.05 ? GA VPC 201 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           41 
#