data_5XHQ
#
_model_server_result.job_id            hnZuH4h3WDl28RDZGCqbQg 
_model_server_result.datetime_utc      '2024-11-04 22:32:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xhq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":602}' 
#
_entry.id    5XHQ 
#
_exptl.entry_id    5XHQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              294.408 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XHQ 
_cell.length_a            90.869 
_cell.length_b            134.094 
_cell.length_c            135.159 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XHQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,M 1 1 
B,F,G,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NH1 
_struct_conn.ptnr1_label_comp_id            ARG 
_struct_conn.ptnr1_label_seq_id             13 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ARG 
_struct_conn.ptnr1_auth_seq_id              13 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            CD 
_struct_conn.ptnr2_label_comp_id            ARG 
_struct_conn.ptnr2_label_seq_id             51 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             ARG 
_struct_conn.ptnr2_auth_seq_id              51 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.339 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C13 H26 O5 S' 
_chem_comp.formula_weight    294.408 
_chem_comp.id                HTG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'heptyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'HEPTYL 1-THIOHEXOPYRANOSIDE;heptyl 1-thio-beta-D-glucoside;heptyl 1-thio-D-glucoside;heptyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S1 HTG sing 165 n n 
C1 C2 HTG sing 166 n n 
C1 O5 HTG sing 167 n n 
C1 H1 HTG sing 168 n n 
S1 C1' HTG sing 169 n n 
C2 O2 HTG sing 170 n n 
C2 C3 HTG sing 171 n n 
C2 H2 HTG sing 172 n n 
O2 HO2 HTG sing 173 n n 
C3 O3 HTG sing 174 n n 
C3 C4 HTG sing 175 n n 
C3 H3 HTG sing 176 n n 
O3 HO3 HTG sing 177 n n 
C4 O4 HTG sing 178 n n 
C4 C5 HTG sing 179 n n 
C4 H4 HTG sing 180 n n 
O4 HO4 HTG sing 181 n n 
C5 O5 HTG sing 182 n n 
C5 C6 HTG sing 183 n n 
C5 H5 HTG sing 184 n n 
C6 O6 HTG sing 185 n n 
C6 H61 HTG sing 186 n n 
C6 H62 HTG sing 187 n n 
O6 HO6 HTG sing 188 n n 
C1' C2' HTG sing 189 n n 
C1' "H1'1" HTG sing 190 n n 
C1' "H1'2" HTG sing 191 n n 
C2' C3' HTG sing 192 n n 
C2' "H2'1" HTG sing 193 n n 
C2' "H2'2" HTG sing 194 n n 
C3' C4' HTG sing 195 n n 
C3' "H3'1" HTG sing 196 n n 
C3' "H3'2" HTG sing 197 n n 
C4' C5' HTG sing 198 n n 
C4' "H4'1" HTG sing 199 n n 
C4' "H4'2" HTG sing 200 n n 
C5' C6' HTG sing 201 n n 
C5' "H5'1" HTG sing 202 n n 
C5' "H5'2" HTG sing 203 n n 
C6' C7' HTG sing 204 n n 
C6' "H6'1" HTG sing 205 n n 
C6' "H6'2" HTG sing 206 n n 
C7' "H7'1" HTG sing 207 n n 
C7' "H7'2" HTG sing 208 n n 
C7' "H7'3" HTG sing 209 n n 
#
_atom_sites.entry_id                     5XHQ 
_atom_sites.fract_transf_matrix[1][1]    0.011005 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007457 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HTG A 1 601 3 HTG HTG . 
D 2 HTG A 1 602 5 HTG HTG . 
E 3 PEG A 1 603 8 PEG PEG . 
F 2 HTG B 1 601 1 HTG HTG . 
G 2 HTG B 1 602 2 HTG HTG . 
H 2 HTG B 1 603 4 HTG HTG . 
I 2 HTG B 1 604 6 HTG HTG . 
J 3 PEG B 1 605 7 PEG PEG . 
K 4 GOL B 1 606 9 GOL GOL . 
L 4 GOL B 1 607 10 GOL GOL . 
M 5 HOH A 1 701 6 HOH HOH . 
M 5 HOH A 2 702 12 HOH HOH . 
M 5 HOH A 3 703 4 HOH HOH . 
M 5 HOH A 4 704 10 HOH HOH . 
M 5 HOH A 5 705 13 HOH HOH . 
M 5 HOH A 6 706 3 HOH HOH . 
M 5 HOH A 7 707 22 HOH HOH . 
N 5 HOH B 1 701 11 HOH HOH . 
N 5 HOH B 2 702 17 HOH HOH . 
N 5 HOH B 3 703 14 HOH HOH . 
N 5 HOH B 4 704 8 HOH HOH . 
N 5 HOH B 5 705 20 HOH HOH . 
N 5 HOH B 6 706 16 HOH HOH . 
N 5 HOH B 7 707 21 HOH HOH . 
N 5 HOH B 8 708 1 HOH HOH . 
N 5 HOH B 9 709 18 HOH HOH . 
N 5 HOH B 10 710 5 HOH HOH . 
N 5 HOH B 11 711 9 HOH HOH . 
N 5 HOH B 12 712 19 HOH HOH . 
N 5 HOH B 13 713 7 HOH HOH . 
N 5 HOH B 14 714 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HTG . . . G 2 -27.086 11.673 74.057 1 61.28 ? C1 HTG 602 B 1 
HETATM 2 S S1 HTG . . . G 2 -26.102 12.8 75.105 1 72.17 ? S1 HTG 602 B 1 
HETATM 3 C C2 HTG . . . G 2 -28.053 12.53 73.301 1 61.2 ? C2 HTG 602 B 1 
HETATM 4 O O2 HTG . . . G 2 -29.009 13.056 74.294 1 58.19 ? O2 HTG 602 B 1 
HETATM 5 C C3 HTG . . . G 2 -28.809 11.86 72.255 1 60.02 ? C3 HTG 602 B 1 
HETATM 6 O O3 HTG . . . G 2 -29.406 12.91 71.386 1 49.27 ? O3 HTG 602 B 1 
HETATM 7 C C4 HTG . . . G 2 -28.007 10.979 71.372 1 59.41 ? C4 HTG 602 B 1 
HETATM 8 O O4 HTG . . . G 2 -28.89 10.033 70.76 1 61.94 ? O4 HTG 602 B 1 
HETATM 9 C C5 HTG . . . G 2 -26.857 10.153 72.034 1 56.66 ? C5 HTG 602 B 1 
HETATM 10 O O5 HTG . . . G 2 -26.182 10.893 73.201 1 57.3 ? O5 HTG 602 B 1 
HETATM 11 C C6 HTG . . . G 2 -25.917 9.916 71.004 1 46.55 ? C6 HTG 602 B 1 
HETATM 12 O O6 HTG . . . G 2 -26.617 9.312 69.952 1 48.85 ? O6 HTG 602 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#