data_5XHR # _model_server_result.job_id TbwiWbKcGgTM7Z8rSmSnVw _model_server_result.datetime_utc '2024-10-19 02:22:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xhr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5XHR # _exptl.entry_id 5XHR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.462 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R},4~{S})-5,5-dimethyl-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-5-thiophen-2-yl-pentan-2-yl]-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XHR _cell.length_a 61.16 _cell.length_b 69.33 _cell.length_c 76.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XHR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 68 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 64 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C7 _struct_conn.ptnr2_label_comp_id PXH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PXH _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.442 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H21 N O4 S2' _chem_comp.formula_weight 343.462 _chem_comp.id PXH _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R},4~{S})-5,5-dimethyl-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-5-thiophen-2-yl-pentan-2-yl]-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C12 PXH doub 264 n y C8 C4 PXH sing 265 n y C12 S13 PXH sing 266 n y C4 C1 PXH doub 267 n y S13 C1 PXH sing 268 n y C1 C17 PXH sing 269 n n C17 C15 PXH sing 270 n n C15 C14 PXH sing 271 n n C14 O14 PXH sing 272 n n C14 C6 PXH sing 273 n n O8 C7 PXH doub 274 n n C7 C6 PXH sing 275 n n C6 C5 PXH sing 276 n n C5 N4 PXH sing 277 n n C5 S1 PXH sing 278 n n N4 C3 PXH sing 279 n n S1 C2 PXH sing 280 n n C3 C2 PXH sing 281 n n C3 C11 PXH sing 282 n n C2 C9 PXH sing 283 n n C2 C10 PXH sing 284 n n C11 O12 PXH doub 285 n n C11 O13 PXH sing 286 n n C7 H1 PXH sing 287 n n N4 H2 PXH sing 288 n n C3 H4 PXH sing 289 n n O13 H5 PXH sing 290 n n C10 H6 PXH sing 291 n n C10 H7 PXH sing 292 n n C10 H8 PXH sing 293 n n C9 H9 PXH sing 294 n n C9 H10 PXH sing 295 n n C9 H11 PXH sing 296 n n C5 H12 PXH sing 297 n n C6 H13 PXH sing 298 n n C15 H14 PXH sing 299 n n C15 H15 PXH sing 300 n n C17 H16 PXH sing 301 n n C17 H17 PXH sing 302 n n C14 H18 PXH sing 303 n n O14 H19 PXH sing 304 n n C4 H20 PXH sing 305 n n C8 H21 PXH sing 306 n n C12 H22 PXH sing 307 n n # _atom_sites.entry_id 5XHR _atom_sites.fract_transf_matrix[1][1] 0.016351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PXH A 1 401 1 PXH PNM . C 3 HOH A 1 501 71 HOH HOH . C 3 HOH A 2 502 126 HOH HOH . C 3 HOH A 3 503 39 HOH HOH . C 3 HOH A 4 504 68 HOH HOH . C 3 HOH A 5 505 79 HOH HOH . C 3 HOH A 6 506 97 HOH HOH . C 3 HOH A 7 507 49 HOH HOH . C 3 HOH A 8 508 102 HOH HOH . C 3 HOH A 9 509 94 HOH HOH . C 3 HOH A 10 510 55 HOH HOH . C 3 HOH A 11 511 30 HOH HOH . C 3 HOH A 12 512 89 HOH HOH . C 3 HOH A 13 513 75 HOH HOH . C 3 HOH A 14 514 31 HOH HOH . C 3 HOH A 15 515 105 HOH HOH . C 3 HOH A 16 516 54 HOH HOH . C 3 HOH A 17 517 40 HOH HOH . C 3 HOH A 18 518 104 HOH HOH . C 3 HOH A 19 519 93 HOH HOH . C 3 HOH A 20 520 2 HOH HOH . C 3 HOH A 21 521 111 HOH HOH . C 3 HOH A 22 522 101 HOH HOH . C 3 HOH A 23 523 18 HOH HOH . C 3 HOH A 24 524 115 HOH HOH . C 3 HOH A 25 525 16 HOH HOH . C 3 HOH A 26 526 41 HOH HOH . C 3 HOH A 27 527 15 HOH HOH . C 3 HOH A 28 528 112 HOH HOH . C 3 HOH A 29 529 67 HOH HOH . C 3 HOH A 30 530 69 HOH HOH . C 3 HOH A 31 531 7 HOH HOH . C 3 HOH A 32 532 122 HOH HOH . C 3 HOH A 33 533 85 HOH HOH . C 3 HOH A 34 534 107 HOH HOH . C 3 HOH A 35 535 66 HOH HOH . C 3 HOH A 36 536 137 HOH HOH . C 3 HOH A 37 537 32 HOH HOH . C 3 HOH A 38 538 35 HOH HOH . C 3 HOH A 39 539 113 HOH HOH . C 3 HOH A 40 540 26 HOH HOH . C 3 HOH A 41 541 83 HOH HOH . C 3 HOH A 42 542 117 HOH HOH . C 3 HOH A 43 543 138 HOH HOH . C 3 HOH A 44 544 95 HOH HOH . C 3 HOH A 45 545 51 HOH HOH . C 3 HOH A 46 546 119 HOH HOH . C 3 HOH A 47 547 14 HOH HOH . C 3 HOH A 48 548 100 HOH HOH . C 3 HOH A 49 549 36 HOH HOH . C 3 HOH A 50 550 11 HOH HOH . C 3 HOH A 51 551 98 HOH HOH . C 3 HOH A 52 552 87 HOH HOH . C 3 HOH A 53 553 58 HOH HOH . C 3 HOH A 54 554 136 HOH HOH . C 3 HOH A 55 555 61 HOH HOH . C 3 HOH A 56 556 116 HOH HOH . C 3 HOH A 57 557 80 HOH HOH . C 3 HOH A 58 558 110 HOH HOH . C 3 HOH A 59 559 52 HOH HOH . C 3 HOH A 60 560 33 HOH HOH . C 3 HOH A 61 561 103 HOH HOH . C 3 HOH A 62 562 17 HOH HOH . C 3 HOH A 63 563 84 HOH HOH . C 3 HOH A 64 564 20 HOH HOH . C 3 HOH A 65 565 74 HOH HOH . C 3 HOH A 66 566 3 HOH HOH . C 3 HOH A 67 567 24 HOH HOH . C 3 HOH A 68 568 21 HOH HOH . C 3 HOH A 69 569 133 HOH HOH . C 3 HOH A 70 570 29 HOH HOH . C 3 HOH A 71 571 1 HOH HOH . C 3 HOH A 72 572 13 HOH HOH . C 3 HOH A 73 573 106 HOH HOH . C 3 HOH A 74 574 47 HOH HOH . C 3 HOH A 75 575 78 HOH HOH . C 3 HOH A 76 576 23 HOH HOH . C 3 HOH A 77 577 92 HOH HOH . C 3 HOH A 78 578 6 HOH HOH . C 3 HOH A 79 579 59 HOH HOH . C 3 HOH A 80 580 99 HOH HOH . C 3 HOH A 81 581 46 HOH HOH . C 3 HOH A 82 582 5 HOH HOH . C 3 HOH A 83 583 76 HOH HOH . C 3 HOH A 84 584 60 HOH HOH . C 3 HOH A 85 585 19 HOH HOH . C 3 HOH A 86 586 53 HOH HOH . C 3 HOH A 87 587 62 HOH HOH . C 3 HOH A 88 588 42 HOH HOH . C 3 HOH A 89 589 12 HOH HOH . C 3 HOH A 90 590 22 HOH HOH . C 3 HOH A 91 591 82 HOH HOH . C 3 HOH A 92 592 125 HOH HOH . C 3 HOH A 93 593 124 HOH HOH . C 3 HOH A 94 594 25 HOH HOH . C 3 HOH A 95 595 37 HOH HOH . C 3 HOH A 96 596 34 HOH HOH . C 3 HOH A 97 597 72 HOH HOH . C 3 HOH A 98 598 10 HOH HOH . C 3 HOH A 99 599 142 HOH HOH . C 3 HOH A 100 600 27 HOH HOH . C 3 HOH A 101 601 48 HOH HOH . C 3 HOH A 102 602 4 HOH HOH . C 3 HOH A 103 603 65 HOH HOH . C 3 HOH A 104 604 90 HOH HOH . C 3 HOH A 105 605 9 HOH HOH . C 3 HOH A 106 606 91 HOH HOH . C 3 HOH A 107 607 127 HOH HOH . C 3 HOH A 108 608 135 HOH HOH . C 3 HOH A 109 609 88 HOH HOH . C 3 HOH A 110 610 56 HOH HOH . C 3 HOH A 111 611 44 HOH HOH . C 3 HOH A 112 612 43 HOH HOH . C 3 HOH A 113 613 120 HOH HOH . C 3 HOH A 114 614 108 HOH HOH . C 3 HOH A 115 615 63 HOH HOH . C 3 HOH A 116 616 96 HOH HOH . C 3 HOH A 117 617 77 HOH HOH . C 3 HOH A 118 618 70 HOH HOH . C 3 HOH A 119 619 132 HOH HOH . C 3 HOH A 120 620 73 HOH HOH . C 3 HOH A 121 621 145 HOH HOH . C 3 HOH A 122 622 109 HOH HOH . C 3 HOH A 123 623 141 HOH HOH . C 3 HOH A 124 624 57 HOH HOH . C 3 HOH A 125 625 143 HOH HOH . C 3 HOH A 126 626 130 HOH HOH . C 3 HOH A 127 627 114 HOH HOH . C 3 HOH A 128 628 118 HOH HOH . C 3 HOH A 129 629 45 HOH HOH . C 3 HOH A 130 630 121 HOH HOH . C 3 HOH A 131 631 144 HOH HOH . C 3 HOH A 132 632 123 HOH HOH . C 3 HOH A 133 633 134 HOH HOH . C 3 HOH A 134 634 140 HOH HOH . C 3 HOH A 135 635 139 HOH HOH . C 3 HOH A 136 636 64 HOH HOH . C 3 HOH A 137 637 38 HOH HOH . C 3 HOH A 138 638 50 HOH HOH . C 3 HOH A 139 639 128 HOH HOH . C 3 HOH A 140 640 28 HOH HOH . C 3 HOH A 141 641 146 HOH HOH . C 3 HOH A 142 642 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 PXH . . . B 2 21.55 88.291 96.338 1 9.05 ? O8 PXH 401 A 1 HETATM 2 C C7 PXH . . . B 2 22.75 88.039 96.39 1 10.5 ? C7 PXH 401 A 1 HETATM 3 N N4 PXH . . . B 2 23.445 87.881 98.688 1 16.4 ? N4 PXH 401 A 1 HETATM 4 C C3 PXH . . . B 2 22.707 88.829 99.544 1 17.91 ? C3 PXH 401 A 1 HETATM 5 C C11 PXH . . . B 2 21.855 88.054 100.514 1 21.81 ? C11 PXH 401 A 1 HETATM 6 O O13 PXH . . . B 2 20.785 88.577 100.908 1 24.92 ? O13 PXH 401 A 1 HETATM 7 O O12 PXH . . . B 2 22.24 86.918 100.872 1 18.93 ? O12 PXH 401 A 1 HETATM 8 C C2 PXH . . . B 2 23.738 89.739 100.219 1 16.61 ? C2 PXH 401 A 1 HETATM 9 C C10 PXH . . . B 2 24.398 88.983 101.362 1 16.84 ? C10 PXH 401 A 1 HETATM 10 C C9 PXH . . . B 2 23.128 91.053 100.695 1 18.71 ? C9 PXH 401 A 1 HETATM 11 S S1 PXH . . . B 2 24.932 90.028 98.952 1 15.91 ? S1 PXH 401 A 1 HETATM 12 C C5 PXH . . . B 2 24.465 88.661 97.934 1 14.82 ? C5 PXH 401 A 1 HETATM 13 C C6 PXH . . . B 2 23.77 89.091 96.663 1 13.19 ? C6 PXH 401 A 1 HETATM 14 C C15 PXH . . . B 2 24.144 89.628 94.218 1 17.53 ? C15 PXH 401 A 1 HETATM 15 C C17 PXH . . . B 2 25.237 89.823 93.175 1 18.6 ? C17 PXH 401 A 1 HETATM 16 C C14 PXH . . . B 2 24.768 89.156 95.522 1 14.97 ? C14 PXH 401 A 1 HETATM 17 O O14 PXH . . . B 2 25.78 90.079 95.938 1 13.15 ? O14 PXH 401 A 1 HETATM 18 C C1 PXH . . . B 2 24.786 90.572 91.945 1 23.28 ? C1 PXH 401 A 1 HETATM 19 C C4 PXH . . . B 2 25.47 91.082 90.826 1 21.49 ? C4 PXH 401 A 1 HETATM 20 C C8 PXH . . . B 2 24.607 91.722 89.91 1 24.1 ? C8 PXH 401 A 1 HETATM 21 C C12 PXH . . . B 2 23.264 91.701 90.289 1 20.47 ? C12 PXH 401 A 1 HETATM 22 S S13 PXH . . . B 2 23.102 90.947 91.816 1 28.48 ? S13 PXH 401 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #