data_5XHS
#
_model_server_result.job_id            a3gOsIi12nx9ekQHUdM9-g 
_model_server_result.datetime_utc      '2024-11-14 07:14:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xhs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5XHS 
#
_exptl.entry_id    5XHS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              246.26 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XHS 
_cell.length_a            42.13 
_cell.length_b            55.274 
_cell.length_c            124.303 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XHS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C1 PHQ . A PHQ 401 1_555 C N SLL . A SLL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
covale ? covale2 C C SLL . A SLL 402 1_555 D N MCM . A MCM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
metalc ? metalc1 A SG CYS 152 A CYS 166 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 A SG CYS 155 A CYS 169 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc3 A SG CYS 193 A CYS 207 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc4 A SG CYS 198 A CYS 212 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'C10 H18 N2 O5' 
_chem_comp.formula_weight    246.26 
_chem_comp.id                SLL 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              '(2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     6-N-succinyl-L-lysine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O SLL doub 331 n n 
C CA SLL sing 332 n n 
C OXT SLL sing 333 n n 
N CA SLL sing 334 n n 
CA CB SLL sing 335 n n 
CB CG SLL sing 336 n n 
CD CE SLL sing 337 n n 
CD CG SLL sing 338 n n 
CE NZ SLL sing 339 n n 
CK CL SLL sing 340 n n 
CK CX SLL sing 341 n n 
CL CP SLL sing 342 n n 
CP OP1 SLL doub 343 n n 
CP OP2 SLL sing 344 n n 
CX OX SLL doub 345 n n 
CX NZ SLL sing 346 n n 
N H SLL sing 347 n n 
N H2 SLL sing 348 n n 
CA HA SLL sing 349 n n 
CB HB SLL sing 350 n n 
CB HBA SLL sing 351 n n 
CD HD SLL sing 352 n n 
CD HDA SLL sing 353 n n 
CE HE SLL sing 354 n n 
CE HEA SLL sing 355 n n 
CG HG SLL sing 356 n n 
CG HGA SLL sing 357 n n 
CK HK SLL sing 358 n n 
CK HKA SLL sing 359 n n 
CL HL SLL sing 360 n n 
CL HLA SLL sing 361 n n 
NZ HNZ SLL sing 362 n n 
OP2 HOP2 SLL sing 363 n n 
OXT HXT SLL sing 364 n n 
#
_atom_sites.entry_id                     5XHS 
_atom_sites.fract_transf_matrix[1][1]    0.023736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018092 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008045 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PHQ A 1 401 1001 PHQ SUB . 
C 3 SLL A 1 402 1001 SLL SUB . 
D 4 MCM A 1 403 1001 MCM SUB . 
E 5 ZN A 1 404 401 ZN ZN . 
F 6 HOH A 1 501 19 HOH HOH . 
F 6 HOH A 2 502 133 HOH HOH . 
F 6 HOH A 3 503 58 HOH HOH . 
F 6 HOH A 4 504 125 HOH HOH . 
F 6 HOH A 5 505 96 HOH HOH . 
F 6 HOH A 6 506 93 HOH HOH . 
F 6 HOH A 7 507 107 HOH HOH . 
F 6 HOH A 8 508 75 HOH HOH . 
F 6 HOH A 9 509 28 HOH HOH . 
F 6 HOH A 10 510 87 HOH HOH . 
F 6 HOH A 11 511 51 HOH HOH . 
F 6 HOH A 12 512 3 HOH HOH . 
F 6 HOH A 13 513 4 HOH HOH . 
F 6 HOH A 14 514 15 HOH HOH . 
F 6 HOH A 15 515 13 HOH HOH . 
F 6 HOH A 16 516 7 HOH HOH . 
F 6 HOH A 17 517 136 HOH HOH . 
F 6 HOH A 18 518 37 HOH HOH . 
F 6 HOH A 19 519 17 HOH HOH . 
F 6 HOH A 20 520 10 HOH HOH . 
F 6 HOH A 21 521 36 HOH HOH . 
F 6 HOH A 22 522 14 HOH HOH . 
F 6 HOH A 23 523 83 HOH HOH . 
F 6 HOH A 24 524 43 HOH HOH . 
F 6 HOH A 25 525 22 HOH HOH . 
F 6 HOH A 26 526 65 HOH HOH . 
F 6 HOH A 27 527 57 HOH HOH . 
F 6 HOH A 28 528 31 HOH HOH . 
F 6 HOH A 29 529 110 HOH HOH . 
F 6 HOH A 30 530 74 HOH HOH . 
F 6 HOH A 31 531 61 HOH HOH . 
F 6 HOH A 32 532 92 HOH HOH . 
F 6 HOH A 33 533 5 HOH HOH . 
F 6 HOH A 34 534 69 HOH HOH . 
F 6 HOH A 35 535 140 HOH HOH . 
F 6 HOH A 36 536 80 HOH HOH . 
F 6 HOH A 37 537 112 HOH HOH . 
F 6 HOH A 38 538 52 HOH HOH . 
F 6 HOH A 39 539 35 HOH HOH . 
F 6 HOH A 40 540 11 HOH HOH . 
F 6 HOH A 41 541 54 HOH HOH . 
F 6 HOH A 42 542 27 HOH HOH . 
F 6 HOH A 43 543 26 HOH HOH . 
F 6 HOH A 44 544 33 HOH HOH . 
F 6 HOH A 45 545 119 HOH HOH . 
F 6 HOH A 46 546 64 HOH HOH . 
F 6 HOH A 47 547 34 HOH HOH . 
F 6 HOH A 48 548 23 HOH HOH . 
F 6 HOH A 49 549 12 HOH HOH . 
F 6 HOH A 50 550 40 HOH HOH . 
F 6 HOH A 51 551 67 HOH HOH . 
F 6 HOH A 52 552 18 HOH HOH . 
F 6 HOH A 53 553 1 HOH HOH . 
F 6 HOH A 54 554 68 HOH HOH . 
F 6 HOH A 55 555 77 HOH HOH . 
F 6 HOH A 56 556 106 HOH HOH . 
F 6 HOH A 57 557 121 HOH HOH . 
F 6 HOH A 58 558 49 HOH HOH . 
F 6 HOH A 59 559 120 HOH HOH . 
F 6 HOH A 60 560 59 HOH HOH . 
F 6 HOH A 61 561 16 HOH HOH . 
F 6 HOH A 62 562 72 HOH HOH . 
F 6 HOH A 63 563 30 HOH HOH . 
F 6 HOH A 64 564 46 HOH HOH . 
F 6 HOH A 65 565 84 HOH HOH . 
F 6 HOH A 66 566 39 HOH HOH . 
F 6 HOH A 67 567 6 HOH HOH . 
F 6 HOH A 68 568 25 HOH HOH . 
F 6 HOH A 69 569 91 HOH HOH . 
F 6 HOH A 70 570 115 HOH HOH . 
F 6 HOH A 71 571 8 HOH HOH . 
F 6 HOH A 72 572 82 HOH HOH . 
F 6 HOH A 73 573 60 HOH HOH . 
F 6 HOH A 74 574 122 HOH HOH . 
F 6 HOH A 75 575 134 HOH HOH . 
F 6 HOH A 76 576 2 HOH HOH . 
F 6 HOH A 77 577 50 HOH HOH . 
F 6 HOH A 78 578 41 HOH HOH . 
F 6 HOH A 79 579 109 HOH HOH . 
F 6 HOH A 80 580 42 HOH HOH . 
F 6 HOH A 81 581 29 HOH HOH . 
F 6 HOH A 82 582 124 HOH HOH . 
F 6 HOH A 83 583 90 HOH HOH . 
F 6 HOH A 84 584 38 HOH HOH . 
F 6 HOH A 85 585 62 HOH HOH . 
F 6 HOH A 86 586 86 HOH HOH . 
F 6 HOH A 87 587 118 HOH HOH . 
F 6 HOH A 88 588 73 HOH HOH . 
F 6 HOH A 89 589 102 HOH HOH . 
F 6 HOH A 90 590 135 HOH HOH . 
F 6 HOH A 91 591 85 HOH HOH . 
F 6 HOH A 92 592 48 HOH HOH . 
F 6 HOH A 93 593 20 HOH HOH . 
F 6 HOH A 94 594 100 HOH HOH . 
F 6 HOH A 95 595 141 HOH HOH . 
F 6 HOH A 96 596 70 HOH HOH . 
F 6 HOH A 97 597 44 HOH HOH . 
F 6 HOH A 98 598 76 HOH HOH . 
F 6 HOH A 99 599 78 HOH HOH . 
F 6 HOH A 100 600 47 HOH HOH . 
F 6 HOH A 101 601 53 HOH HOH . 
F 6 HOH A 102 602 55 HOH HOH . 
F 6 HOH A 103 603 32 HOH HOH . 
F 6 HOH A 104 604 97 HOH HOH . 
F 6 HOH A 105 605 104 HOH HOH . 
F 6 HOH A 106 606 21 HOH HOH . 
F 6 HOH A 107 607 98 HOH HOH . 
F 6 HOH A 108 608 117 HOH HOH . 
F 6 HOH A 109 609 89 HOH HOH . 
F 6 HOH A 110 610 116 HOH HOH . 
F 6 HOH A 111 611 56 HOH HOH . 
F 6 HOH A 112 612 24 HOH HOH . 
F 6 HOH A 113 613 145 HOH HOH . 
F 6 HOH A 114 614 144 HOH HOH . 
F 6 HOH A 115 615 129 HOH HOH . 
F 6 HOH A 116 616 79 HOH HOH . 
F 6 HOH A 117 617 9 HOH HOH . 
F 6 HOH A 118 618 95 HOH HOH . 
F 6 HOH A 119 619 138 HOH HOH . 
F 6 HOH A 120 620 139 HOH HOH . 
F 6 HOH A 121 621 113 HOH HOH . 
F 6 HOH A 122 622 142 HOH HOH . 
F 6 HOH A 123 623 127 HOH HOH . 
F 6 HOH A 124 624 126 HOH HOH . 
F 6 HOH A 125 625 108 HOH HOH . 
F 6 HOH A 126 626 66 HOH HOH . 
F 6 HOH A 127 627 94 HOH HOH . 
F 6 HOH A 128 628 81 HOH HOH . 
F 6 HOH A 129 629 105 HOH HOH . 
F 6 HOH A 130 630 131 HOH HOH . 
F 6 HOH A 131 631 130 HOH HOH . 
F 6 HOH A 132 632 63 HOH HOH . 
F 6 HOH A 133 633 45 HOH HOH . 
F 6 HOH A 134 634 123 HOH HOH . 
F 6 HOH A 135 635 146 HOH HOH . 
F 6 HOH A 136 636 103 HOH HOH . 
F 6 HOH A 137 637 147 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C SLL . . . C 3 18.316 -28.082 -2.756 1 53.2 ? C SLL 402 A 1 
HETATM 2 N N SLL . . . C 3 15.908 -27.461 -2.931 1 62.92 ? N SLL 402 A 1 
HETATM 3 O O SLL . . . C 3 18.622 -26.949 -2.616 1 49.78 ? O SLL 402 A 1 
HETATM 4 C CA SLL . . . C 3 16.915 -28.508 -3.192 1 59.75 ? CA SLL 402 A 1 
HETATM 5 C CB SLL . . . C 3 16.984 -28.934 -4.652 1 49.98 ? CB SLL 402 A 1 
HETATM 6 C CD SLL . . . C 3 16.607 -28.038 -6.981 1 57.58 ? CD SLL 402 A 1 
HETATM 7 C CE SLL . . . C 3 15.173 -28.046 -7.464 1 51.57 ? CE SLL 402 A 1 
HETATM 8 C CG SLL . . . C 3 16.648 -27.706 -5.502 1 62.73 ? CG SLL 402 A 1 
HETATM 9 C CK SLL . . . C 3 15.174 -29.431 -11.049 1 38.67 ? CK SLL 402 A 1 
HETATM 10 C CL SLL . . . C 3 13.733 -29.254 -11.464 1 43.12 ? CL SLL 402 A 1 
HETATM 11 C CP SLL . . . C 3 13.648 -29.384 -12.958 1 31.42 ? CP SLL 402 A 1 
HETATM 12 C CX SLL . . . C 3 15.273 -28.49 -9.88 1 40.84 ? CX SLL 402 A 1 
HETATM 13 O OX SLL . . . C 3 15.445 -27.337 -10.051 1 55.19 ? OX SLL 402 A 1 
HETATM 14 N NZ SLL . . . C 3 15.089 -28.995 -8.555 1 46.63 ? NZ SLL 402 A 1 
HETATM 15 O OP1 SLL . . . C 3 13.948 -28.403 -13.688 1 26.45 ? OP1 SLL 402 A 1 
HETATM 16 O OP2 SLL . . . C 3 13.289 -30.497 -13.399 1 30.81 -1 OP2 SLL 402 A 1 
HETATM 17 H H SLL . . . C 3 16.148 -26.628 -2.895 1 75.51 ? H SLL 402 A 1 
HETATM 18 H HA SLL . . . C 3 16.676 -29.263 -2.687 1 71.7 ? HA SLL 402 A 1 
HETATM 19 H HB SLL . . . C 3 16.36 -29.616 -4.816 1 59.97 ? HB SLL 402 A 1 
HETATM 20 H HBA SLL . . . C 3 17.85 -29.235 -4.856 1 59.97 ? HBA SLL 402 A 1 
HETATM 21 H HD SLL . . . C 3 16.989 -28.884 -7.121 1 69.1 ? HD SLL 402 A 1 
HETATM 22 H HDA SLL . . . C 3 17.094 -27.393 -7.459 1 69.1 ? HDA SLL 402 A 1 
HETATM 23 H HE SLL . . . C 3 14.933 -27.19 -7.767 1 61.89 ? HE SLL 402 A 1 
HETATM 24 H HEA SLL . . . C 3 14.602 -28.31 -6.767 1 61.89 ? HEA SLL 402 A 1 
HETATM 25 H HG SLL . . . C 3 17.299 -27.045 -5.355 1 75.28 ? HG SLL 402 A 1 
HETATM 26 H HGA SLL . . . C 3 15.81 -27.373 -5.24 1 75.28 ? HGA SLL 402 A 1 
HETATM 27 H HK SLL . . . C 3 15.34 -30.315 -10.783 1 46.4 ? HK SLL 402 A 1 
HETATM 28 H HKA SLL . . . C 3 15.755 -29.17 -11.739 1 46.4 ? HKA SLL 402 A 1 
HETATM 29 H HL SLL . . . C 3 13.204 -29.915 -11.058 1 51.75 ? HL SLL 402 A 1 
HETATM 30 H HLA SLL . . . C 3 13.431 -28.403 -11.203 1 51.75 ? HLA SLL 402 A 1 
HETATM 31 H HNZ SLL . . . C 3 14.949 -29.839 -8.409 1 55.96 ? HNZ SLL 402 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           375 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#