data_5XHS # _model_server_result.job_id RguX_UPDQNQgph2bB7mqeQ _model_server_result.datetime_utc '2024-11-24 01:18:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xhs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5XHS # _exptl.entry_id 5XHS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.184 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-AMINO-4-METHYL-CHROMEN-2-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XHS _cell.length_a 42.13 _cell.length_b 55.274 _cell.length_c 124.303 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XHS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 PHQ . A PHQ 401 1_555 C N SLL . A SLL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale2 C C SLL . A SLL 402 1_555 D N MCM . A MCM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A SG CYS 152 A CYS 166 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 A SG CYS 155 A CYS 169 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A SG CYS 193 A CYS 207 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc4 A SG CYS 198 A CYS 212 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? # _chem_comp.formula 'C10 H9 N O2' _chem_comp.formula_weight 175.184 _chem_comp.id MCM _chem_comp.mon_nstd_flag . _chem_comp.name 7-AMINO-4-METHYL-CHROMEN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-AMINO-4-METHYLCOUMARIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MCM sing 218 n n N HN1 MCM sing 219 n n N HN2 MCM sing 220 n n CA C2 MCM doub 221 n y CA C9 MCM sing 222 n y C2 C3 MCM sing 223 n y C2 H2 MCM sing 224 n n C3 C7 MCM doub 225 n y C3 O1 MCM sing 226 n y C4 C5 MCM sing 227 n y C4 O1 MCM sing 228 n y C4 O2 MCM doub 229 n n C5 C6 MCM doub 230 n y C5 H5 MCM sing 231 n n C6 C7 MCM sing 232 n y C6 C10 MCM sing 233 n n C7 C8 MCM sing 234 n y C8 C9 MCM doub 235 n y C8 H8 MCM sing 236 n n C9 H9 MCM sing 237 n n C10 H101 MCM sing 238 n n C10 H102 MCM sing 239 n n C10 H103 MCM sing 240 n n # _atom_sites.entry_id 5XHS _atom_sites.fract_transf_matrix[1][1] 0.023736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PHQ A 1 401 1001 PHQ SUB . C 3 SLL A 1 402 1001 SLL SUB . D 4 MCM A 1 403 1001 MCM SUB . E 5 ZN A 1 404 401 ZN ZN . F 6 HOH A 1 501 19 HOH HOH . F 6 HOH A 2 502 133 HOH HOH . F 6 HOH A 3 503 58 HOH HOH . F 6 HOH A 4 504 125 HOH HOH . F 6 HOH A 5 505 96 HOH HOH . F 6 HOH A 6 506 93 HOH HOH . F 6 HOH A 7 507 107 HOH HOH . F 6 HOH A 8 508 75 HOH HOH . F 6 HOH A 9 509 28 HOH HOH . F 6 HOH A 10 510 87 HOH HOH . F 6 HOH A 11 511 51 HOH HOH . F 6 HOH A 12 512 3 HOH HOH . F 6 HOH A 13 513 4 HOH HOH . F 6 HOH A 14 514 15 HOH HOH . F 6 HOH A 15 515 13 HOH HOH . F 6 HOH A 16 516 7 HOH HOH . F 6 HOH A 17 517 136 HOH HOH . F 6 HOH A 18 518 37 HOH HOH . F 6 HOH A 19 519 17 HOH HOH . F 6 HOH A 20 520 10 HOH HOH . F 6 HOH A 21 521 36 HOH HOH . F 6 HOH A 22 522 14 HOH HOH . F 6 HOH A 23 523 83 HOH HOH . F 6 HOH A 24 524 43 HOH HOH . F 6 HOH A 25 525 22 HOH HOH . F 6 HOH A 26 526 65 HOH HOH . F 6 HOH A 27 527 57 HOH HOH . F 6 HOH A 28 528 31 HOH HOH . F 6 HOH A 29 529 110 HOH HOH . F 6 HOH A 30 530 74 HOH HOH . F 6 HOH A 31 531 61 HOH HOH . F 6 HOH A 32 532 92 HOH HOH . F 6 HOH A 33 533 5 HOH HOH . F 6 HOH A 34 534 69 HOH HOH . F 6 HOH A 35 535 140 HOH HOH . F 6 HOH A 36 536 80 HOH HOH . F 6 HOH A 37 537 112 HOH HOH . F 6 HOH A 38 538 52 HOH HOH . F 6 HOH A 39 539 35 HOH HOH . F 6 HOH A 40 540 11 HOH HOH . F 6 HOH A 41 541 54 HOH HOH . F 6 HOH A 42 542 27 HOH HOH . F 6 HOH A 43 543 26 HOH HOH . F 6 HOH A 44 544 33 HOH HOH . F 6 HOH A 45 545 119 HOH HOH . F 6 HOH A 46 546 64 HOH HOH . F 6 HOH A 47 547 34 HOH HOH . F 6 HOH A 48 548 23 HOH HOH . F 6 HOH A 49 549 12 HOH HOH . F 6 HOH A 50 550 40 HOH HOH . F 6 HOH A 51 551 67 HOH HOH . F 6 HOH A 52 552 18 HOH HOH . F 6 HOH A 53 553 1 HOH HOH . F 6 HOH A 54 554 68 HOH HOH . F 6 HOH A 55 555 77 HOH HOH . F 6 HOH A 56 556 106 HOH HOH . F 6 HOH A 57 557 121 HOH HOH . F 6 HOH A 58 558 49 HOH HOH . F 6 HOH A 59 559 120 HOH HOH . F 6 HOH A 60 560 59 HOH HOH . F 6 HOH A 61 561 16 HOH HOH . F 6 HOH A 62 562 72 HOH HOH . F 6 HOH A 63 563 30 HOH HOH . F 6 HOH A 64 564 46 HOH HOH . F 6 HOH A 65 565 84 HOH HOH . F 6 HOH A 66 566 39 HOH HOH . F 6 HOH A 67 567 6 HOH HOH . F 6 HOH A 68 568 25 HOH HOH . F 6 HOH A 69 569 91 HOH HOH . F 6 HOH A 70 570 115 HOH HOH . F 6 HOH A 71 571 8 HOH HOH . F 6 HOH A 72 572 82 HOH HOH . F 6 HOH A 73 573 60 HOH HOH . F 6 HOH A 74 574 122 HOH HOH . F 6 HOH A 75 575 134 HOH HOH . F 6 HOH A 76 576 2 HOH HOH . F 6 HOH A 77 577 50 HOH HOH . F 6 HOH A 78 578 41 HOH HOH . F 6 HOH A 79 579 109 HOH HOH . F 6 HOH A 80 580 42 HOH HOH . F 6 HOH A 81 581 29 HOH HOH . F 6 HOH A 82 582 124 HOH HOH . F 6 HOH A 83 583 90 HOH HOH . F 6 HOH A 84 584 38 HOH HOH . F 6 HOH A 85 585 62 HOH HOH . F 6 HOH A 86 586 86 HOH HOH . F 6 HOH A 87 587 118 HOH HOH . F 6 HOH A 88 588 73 HOH HOH . F 6 HOH A 89 589 102 HOH HOH . F 6 HOH A 90 590 135 HOH HOH . F 6 HOH A 91 591 85 HOH HOH . F 6 HOH A 92 592 48 HOH HOH . F 6 HOH A 93 593 20 HOH HOH . F 6 HOH A 94 594 100 HOH HOH . F 6 HOH A 95 595 141 HOH HOH . F 6 HOH A 96 596 70 HOH HOH . F 6 HOH A 97 597 44 HOH HOH . F 6 HOH A 98 598 76 HOH HOH . F 6 HOH A 99 599 78 HOH HOH . F 6 HOH A 100 600 47 HOH HOH . F 6 HOH A 101 601 53 HOH HOH . F 6 HOH A 102 602 55 HOH HOH . F 6 HOH A 103 603 32 HOH HOH . F 6 HOH A 104 604 97 HOH HOH . F 6 HOH A 105 605 104 HOH HOH . F 6 HOH A 106 606 21 HOH HOH . F 6 HOH A 107 607 98 HOH HOH . F 6 HOH A 108 608 117 HOH HOH . F 6 HOH A 109 609 89 HOH HOH . F 6 HOH A 110 610 116 HOH HOH . F 6 HOH A 111 611 56 HOH HOH . F 6 HOH A 112 612 24 HOH HOH . F 6 HOH A 113 613 145 HOH HOH . F 6 HOH A 114 614 144 HOH HOH . F 6 HOH A 115 615 129 HOH HOH . F 6 HOH A 116 616 79 HOH HOH . F 6 HOH A 117 617 9 HOH HOH . F 6 HOH A 118 618 95 HOH HOH . F 6 HOH A 119 619 138 HOH HOH . F 6 HOH A 120 620 139 HOH HOH . F 6 HOH A 121 621 113 HOH HOH . F 6 HOH A 122 622 142 HOH HOH . F 6 HOH A 123 623 127 HOH HOH . F 6 HOH A 124 624 126 HOH HOH . F 6 HOH A 125 625 108 HOH HOH . F 6 HOH A 126 626 66 HOH HOH . F 6 HOH A 127 627 94 HOH HOH . F 6 HOH A 128 628 81 HOH HOH . F 6 HOH A 129 629 105 HOH HOH . F 6 HOH A 130 630 131 HOH HOH . F 6 HOH A 131 631 130 HOH HOH . F 6 HOH A 132 632 63 HOH HOH . F 6 HOH A 133 633 45 HOH HOH . F 6 HOH A 134 634 123 HOH HOH . F 6 HOH A 135 635 146 HOH HOH . F 6 HOH A 136 636 103 HOH HOH . F 6 HOH A 137 637 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MCM . . . D 4 19.231 -29.185 -2.533 1 51.57 ? N MCM 403 A 1 HETATM 2 C CA MCM . . . D 4 20.582 -29.037 -2.059 1 46.12 ? CA MCM 403 A 1 HETATM 3 C C2 MCM . . . D 4 21.199 -27.818 -1.952 1 49.26 ? C2 MCM 403 A 1 HETATM 4 C C3 MCM . . . D 4 22.498 -27.765 -1.445 1 54.85 ? C3 MCM 403 A 1 HETATM 5 C C4 MCM . . . D 4 24.496 -26.569 -1.354 1 61.16 ? C4 MCM 403 A 1 HETATM 6 C C5 MCM . . . D 4 25.132 -27.654 -0.713 1 68.27 ? C5 MCM 403 A 1 HETATM 7 C C6 MCM . . . D 4 24.426 -28.866 -0.54 1 54.27 ? C6 MCM 403 A 1 HETATM 8 C C7 MCM . . . D 4 23.131 -28.919 -1.046 1 45.25 ? C7 MCM 403 A 1 HETATM 9 C C8 MCM . . . D 4 22.503 -30.137 -1.131 1 40.35 ? C8 MCM 403 A 1 HETATM 10 C C9 MCM . . . D 4 21.218 -30.18 -1.623 1 44.73 ? C9 MCM 403 A 1 HETATM 11 C C10 MCM . . . D 4 24.974 -30.124 0.167 1 46.58 ? C10 MCM 403 A 1 HETATM 12 O O1 MCM . . . D 4 23.15 -26.561 -1.361 1 63.8 ? O1 MCM 403 A 1 HETATM 13 O O2 MCM . . . D 4 25.102 -25.689 -1.892 1 50.64 ? O2 MCM 403 A 1 HETATM 14 H HN1 MCM . . . D 4 18.924 -29.991 -2.635 1 61.89 ? HN1 MCM 403 A 1 HETATM 15 H H2 MCM . . . D 4 20.768 -27.043 -2.23 1 59.11 ? H2 MCM 403 A 1 HETATM 16 H H5 MCM . . . D 4 26.032 -27.601 -0.486 1 81.93 ? H5 MCM 403 A 1 HETATM 17 H H8 MCM . . . D 4 22.932 -30.913 -0.855 1 48.41 ? H8 MCM 403 A 1 HETATM 18 H H9 MCM . . . D 4 20.782 -30.998 -1.69 1 53.68 ? H9 MCM 403 A 1 HETATM 19 H H101 MCM . . . D 4 24.395 -30.368 0.864 1 55.9 ? H101 MCM 403 A 1 HETATM 20 H H102 MCM . . . D 4 25.035 -30.828 -0.451 1 55.9 ? H102 MCM 403 A 1 HETATM 21 H H103 MCM . . . D 4 25.826 -29.94 0.517 1 55.9 ? H103 MCM 403 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #