data_5XI1
#
_model_server_result.job_id            YOqjWwmKNlY1K6n-lL43Og 
_model_server_result.datetime_utc      '2024-10-19 19:46:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xi1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    5XI1 
#
_exptl.entry_id    5XI1 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              318.235 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N3 C 1 S C 1 1_555 B N1 G 9 A G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 C 1 S C 1 1_555 B O6 G 9 A G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 C 1 S C 1 1_555 B N2 G 9 A G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 C 2 S C 2 1_555 B N1 G 8 A G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N4 C 2 S C 2 1_555 B O6 G 8 A G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O2 C 2 S C 2 1_555 B N2 G 8 A G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 G 3 S G 3 1_555 B N3 C 7 A C 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N2 G 3 S G 3 1_555 B O2 C 7 A C 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O6 G 3 S G 3 1_555 B N4 C 7 A C 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N3 C 4 S C 4 1_555 B N1 G 6 A G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N4 C 4 S C 4 1_555 B O6 G 6 A G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O2 C 4 S C 4 1_555 B N2 G 6 A G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 G 6 S G 6 1_555 B N3 C 4 A C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N2 G 6 S G 6 1_555 B O2 C 4 A C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O6 G 6 S G 6 1_555 B N4 C 4 A C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N3 C 7 S C 7 1_555 B N1 G 3 A G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N4 C 7 S C 7 1_555 B O6 G 3 A G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O2 C 7 S C 7 1_555 B N2 G 3 A G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N1 G 8 S G 8 1_555 B N3 C 2 A C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N2 G 8 S G 8 1_555 B O2 C 2 A C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O6 G 8 S G 8 1_555 B N4 C 2 A C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N1 G 9 S G 9 1_555 B N3 C 1 A C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N2 G 9 S G 9 1_555 B O2 C 1 A C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A O6 G 9 S G 9 1_555 B N4 C 1 A C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C15 H10 O8' 
_chem_comp.formula_weight    318.235 
_chem_comp.id                MYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2-(3,4,5-TRIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-4H-1-BENZOPYRAN-4-ONE;3,3',4',5,5',7-HEXAHYDROXYFLAVONE;MYRICETIN;CANNABISCETIN" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MYC doub 116 n y 
C1 C6 MYC sing 117 n y 
C1 H1 MYC sing 118 n n 
C2 C3 MYC sing 119 n y 
C2 O30 MYC sing 120 n n 
C3 C4 MYC doub 121 n y 
C3 C9 MYC sing 122 n y 
C4 C5 MYC sing 123 n y 
C4 O12 MYC sing 124 n y 
C5 C6 MYC doub 125 n y 
C5 H5 MYC sing 126 n n 
C6 O29 MYC sing 127 n n 
C9 C10 MYC sing 128 n y 
C9 O13 MYC doub 129 n n 
C10 C11 MYC doub 130 n y 
C10 O27 MYC sing 131 n n 
C11 C14 MYC sing 132 n y 
C11 O12 MYC sing 133 n y 
C14 C15 MYC doub 134 n y 
C14 C19 MYC sing 135 n y 
C15 C16 MYC sing 136 n y 
C15 H15 MYC sing 137 n n 
C16 C17 MYC doub 138 n y 
C16 O25 MYC sing 139 n n 
C17 C18 MYC sing 140 n y 
C17 O24 MYC sing 141 n n 
C18 C19 MYC doub 142 n y 
C18 O23 MYC sing 143 n n 
C19 H19 MYC sing 144 n n 
O23 HO3 MYC sing 145 n n 
O24 HO4 MYC sing 146 n n 
O25 HO5 MYC sing 147 n n 
O27 HO7 MYC sing 148 n n 
O29 HO9 MYC sing 149 n n 
O30 HO0 MYC sing 150 n n 
#
_atom_sites.entry_id                     5XI1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MYC S 1 101 0 MYC UNK . 
D 2 MYC S 1 102 0 MYC UNK . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MYC . . . D 2 9.172 -4.384 -3.048 1 0 ? C1 MYC 102 S 1 
HETATM 2 C C2 MYC . . . D 2 8.97 -3.204 -2.329 1 0 ? C2 MYC 102 S 1 
HETATM 3 C C3 MYC . . . D 2 7.663 -2.785 -2.061 1 0 ? C3 MYC 102 S 1 
HETATM 4 C C4 MYC . . . D 2 6.595 -3.513 -2.57 1 0 ? C4 MYC 102 S 1 
HETATM 5 C C5 MYC . . . D 2 6.81 -4.606 -3.392 1 0 ? C5 MYC 102 S 1 
HETATM 6 C C6 MYC . . . D 2 8.098 -5.069 -3.613 1 0 ? C6 MYC 102 S 1 
HETATM 7 C C9 MYC . . . D 2 7.342 -1.688 -1.139 1 0 ? C9 MYC 102 S 1 
HETATM 8 C C10 MYC . . . D 2 5.942 -1.545 -0.654 1 0 ? C10 MYC 102 S 1 
HETATM 9 C C11 MYC . . . D 2 4.996 -2.331 -1.215 1 0 ? C11 MYC 102 S 1 
HETATM 10 C C14 MYC . . . D 2 3.575 -2.432 -0.805 1 0 ? C14 MYC 102 S 1 
HETATM 11 C C15 MYC . . . D 2 2.904 -3.651 -0.97 1 0 ? C15 MYC 102 S 1 
HETATM 12 C C16 MYC . . . D 2 1.612 -3.817 -0.498 1 0 ? C16 MYC 102 S 1 
HETATM 13 C C17 MYC . . . D 2 0.958 -2.764 0.098 1 0 ? C17 MYC 102 S 1 
HETATM 14 C C18 MYC . . . D 2 1.586 -1.542 0.236 1 0 ? C18 MYC 102 S 1 
HETATM 15 C C19 MYC . . . D 2 2.897 -1.372 -0.203 1 0 ? C19 MYC 102 S 1 
HETATM 16 O O12 MYC . . . D 2 5.291 -3.199 -2.216 1 0 ? O12 MYC 102 S 1 
HETATM 17 O O13 MYC . . . D 2 8.163 -0.937 -0.687 1 0 ? O13 MYC 102 S 1 
HETATM 18 O O23 MYC . . . D 2 0.85 -0.528 0.811 1 0 ? O23 MYC 102 S 1 
HETATM 19 O O24 MYC . . . D 2 -0.334 -2.944 0.549 1 0 ? O24 MYC 102 S 1 
HETATM 20 O O25 MYC . . . D 2 0.929 -5.009 -0.607 1 0 ? O25 MYC 102 S 1 
HETATM 21 O O27 MYC . . . D 2 5.734 -0.643 0.353 1 0 ? O27 MYC 102 S 1 
HETATM 22 O O29 MYC . . . D 2 8.292 -6.248 -4.317 1 0 ? O29 MYC 102 S 1 
HETATM 23 O O30 MYC . . . D 2 10.071 -2.549 -1.793 1 0 ? O30 MYC 102 S 1 
HETATM 24 H H1 MYC . . . D 2 10.161 -4.817 -3.082 1 0 ? H1 MYC 102 S 1 
HETATM 25 H H5 MYC . . . D 2 5.932 -5.105 -3.775 1 0 ? H5 MYC 102 S 1 
HETATM 26 H H15 MYC . . . D 2 3.389 -4.501 -1.426 1 0 ? H15 MYC 102 S 1 
HETATM 27 H H19 MYC . . . D 2 3.382 -0.415 -0.076 1 0 ? H19 MYC 102 S 1 
HETATM 28 H HO3 MYC . . . D 2 -0.061 -0.785 0.744 1 0 ? HO3 MYC 102 S 1 
HETATM 29 H HO4 MYC . . . D 2 -0.343 -2.821 1.489 1 0 ? HO4 MYC 102 S 1 
HETATM 30 H HO5 MYC . . . D 2 0.123 -4.885 -0.124 1 0 ? HO5 MYC 102 S 1 
HETATM 31 H HO7 MYC . . . D 2 6.644 -0.383 0.3 1 0 ? HO7 MYC 102 S 1 
HETATM 32 H HO9 MYC . . . D 2 7.559 -6.828 -4.161 1 0 ? HO9 MYC 102 S 1 
HETATM 33 H HO0 MYC . . . D 2 9.769 -1.766 -1.354 1 0 ? HO0 MYC 102 S 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           2783 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           33 
#