data_5XI7
#
_model_server_result.job_id            lL9c3ay1niW1xLHDWh49Rw 
_model_server_result.datetime_utc      '2024-11-01 03:31:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xi7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":503}' 
#
_entry.id    5XI7 
#
_exptl.entry_id    5XI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XI7 
_cell.length_a            105.251 
_cell.length_b            157.375 
_cell.length_c            182.467 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 M N N 
? 7 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc7 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? 
metalc ? metalc8 G O3G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc9 G O2B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 W O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc11 H MG MG . A MG 502 1_555 W O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc12 H MG MG . A MG 502 1_555 X O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc13 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc14 B OE1 GLU 111 B GLU 111 1_555 M CA CA . B CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc15 J O2A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc16 K MG MG . B MG 502 1_555 X O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc17 K MG MG . B MG 502 1_555 X O HOH . B HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc18 K MG MG . B MG 502 1_555 X O HOH . B HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc19 K MG MG . B MG 502 1_555 Y O HOH . C HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc20 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc21 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc22 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? 
metalc ? metalc23 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc24 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc25 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc26 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc27 P O3G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc28 P O2B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc29 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc30 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc31 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc32 Q MG MG . C MG 502 1_555 Y O HOH . C HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc33 S O2G GTP . D GTP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc34 S O2B GTP . D GTP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XI7 
_atom_sites.fract_transf_matrix[1][1]    0.009501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006354 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00548 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 GDP B 1 501 501 GDP GDP . 
K 6 MG B 1 502 502 MG MG . 
L 9 MES B 1 503 505 MES MES . 
M 7 CA B 1 504 2 CA CA . 
N 9 MES B 1 505 505 MES MES . 
O 10 PO7 B 1 506 1 PO7 PO7 . 
P 5 GTP C 1 501 501 GTP GTP . 
Q 6 MG C 1 502 502 MG MG . 
R 7 CA C 1 503 1 CA CA . 
S 5 GTP D 1 501 501 GTP GTP . 
T 6 MG D 1 502 502 MG MG . 
U 10 PO7 D 1 503 2 PO7 PO7 . 
V 11 ACP F 1 401 401 ACP ACP . 
W 12 HOH A 1 601 47 HOH HOH . 
W 12 HOH A 2 602 25 HOH HOH . 
W 12 HOH A 3 603 48 HOH HOH . 
W 12 HOH A 4 604 64 HOH HOH . 
W 12 HOH A 5 605 62 HOH HOH . 
W 12 HOH A 6 606 49 HOH HOH . 
W 12 HOH A 7 607 74 HOH HOH . 
W 12 HOH A 8 608 59 HOH HOH . 
W 12 HOH A 9 609 22 HOH HOH . 
W 12 HOH A 10 610 66 HOH HOH . 
W 12 HOH A 11 611 67 HOH HOH . 
W 12 HOH A 12 612 99 HOH HOH . 
W 12 HOH A 13 613 96 HOH HOH . 
W 12 HOH A 14 614 58 HOH HOH . 
W 12 HOH A 15 615 68 HOH HOH . 
W 12 HOH A 16 616 65 HOH HOH . 
X 12 HOH B 1 601 28 HOH HOH . 
X 12 HOH B 2 602 50 HOH HOH . 
X 12 HOH B 3 603 52 HOH HOH . 
X 12 HOH B 4 604 53 HOH HOH . 
X 12 HOH B 5 605 54 HOH HOH . 
X 12 HOH B 6 606 24 HOH HOH . 
X 12 HOH B 7 607 46 HOH HOH . 
X 12 HOH B 8 608 45 HOH HOH . 
X 12 HOH B 9 609 17 HOH HOH . 
X 12 HOH B 10 610 95 HOH HOH . 
X 12 HOH B 11 611 27 HOH HOH . 
X 12 HOH B 12 612 26 HOH HOH . 
X 12 HOH B 13 613 75 HOH HOH . 
X 12 HOH B 14 614 56 HOH HOH . 
X 12 HOH B 15 615 16 HOH HOH . 
Y 12 HOH C 1 601 43 HOH HOH . 
Y 12 HOH C 2 602 39 HOH HOH . 
Y 12 HOH C 3 603 101 HOH HOH . 
Y 12 HOH C 4 604 90 HOH HOH . 
Y 12 HOH C 5 605 8 HOH HOH . 
Y 12 HOH C 6 606 35 HOH HOH . 
Y 12 HOH C 7 607 37 HOH HOH . 
Y 12 HOH C 8 608 102 HOH HOH . 
Y 12 HOH C 9 609 31 HOH HOH . 
Y 12 HOH C 10 610 13 HOH HOH . 
Y 12 HOH C 11 611 80 HOH HOH . 
Y 12 HOH C 12 612 36 HOH HOH . 
Y 12 HOH C 13 613 79 HOH HOH . 
Y 12 HOH C 14 614 104 HOH HOH . 
Y 12 HOH C 15 615 84 HOH HOH . 
Y 12 HOH C 16 616 15 HOH HOH . 
Y 12 HOH C 17 617 87 HOH HOH . 
Y 12 HOH C 18 618 38 HOH HOH . 
Y 12 HOH C 19 619 40 HOH HOH . 
Y 12 HOH C 20 620 103 HOH HOH . 
Y 12 HOH C 21 621 4 HOH HOH . 
Y 12 HOH C 22 622 30 HOH HOH . 
Y 12 HOH C 23 623 1 HOH HOH . 
Y 12 HOH C 24 624 81 HOH HOH . 
Y 12 HOH C 25 625 6 HOH HOH . 
Y 12 HOH C 26 626 14 HOH HOH . 
Y 12 HOH C 27 627 29 HOH HOH . 
Y 12 HOH C 28 628 93 HOH HOH . 
Y 12 HOH C 29 629 34 HOH HOH . 
Y 12 HOH C 30 630 12 HOH HOH . 
Y 12 HOH C 31 631 82 HOH HOH . 
Y 12 HOH C 32 632 11 HOH HOH . 
Y 12 HOH C 33 633 88 HOH HOH . 
Z 12 HOH E 1 201 3 HOH HOH . 
Z 12 HOH E 2 202 61 HOH HOH . 
AA 12 HOH F 1 501 72 HOH HOH . 
AA 12 HOH F 2 502 70 HOH HOH . 
AA 12 HOH F 3 503 71 HOH HOH . 
AA 12 HOH F 4 504 69 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         R 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               -14.47 
_atom_site.Cartn_y               55.278 
_atom_site.Cartn_z               11.117 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        56.09 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#